NO04G05080.1, NO04G05080.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G05080.1
Unique NameNO04G05080.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1854
Alignment locationchr4:1415241..1417987 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1415241..1417987 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G05080.1 vs.
Match: EWM28927.1 (Pre-mRNA polyadenylation factor Fip1 [Nannochloropsis gaditana])

HSP 1 Score: 299.7 bits (766), Expect = 2.100e-77
Identity = 216/376 (57.45%), Postives = 250/376 (66.49%), Query Frame = 0 
Query:    1 MPPKRPTRSAASSVAAADVSPPAANVEAAASAP--------------AKRKMGEKEKMKEAAVEAPPQPAPLDPRGRKVAAVVENEEKVGDVNEEEMEEEDEESTDEEEDEEECEDESDDDIKLVMTGPARYRSFANKYVRPGLEGGAGAGTAGSTAASAAATMAEGGKAAGEEKEGEE--EEEAAEERRRAAAWEGFGADDEEGKEGEGEREGEDEADMFTDPLKHPAIRDYREKFHDEDFPPTDQLRLRFKRTAFDIDINTVEEKGWDRSGASPADYFNYGFVEESWALYSEKQIRLRWLAQKRDVQTAQEEEIMLASILEAKAAEGRKFEEEEEAEWGRIR-----GGVEGGGGGGEETNFSPPLREGLPPAI 356
            MP  R   SA S+ A+++ + P+   E   S P              +KR+  E +K ++   +      PL          V +   V D +  + EEEDEESTDEEE+EEE  +ESDDDI LVMTGP RYR+FANKY+RPGLEG  G   A    A          KA GE KEG+E  EEEAAE RRRA AWEGFGAD+EEGKEG G  + E+EADMFT+PLKHPAIR Y + F DEDFPPTDQLRLRFKRTAFDIDI TVEEKGW+R+GAS ADYFNYGFVEESWALYSEKQIRLRWLAQK++ QTAQEEE +LAS+LEA+AAEGRK+EEEEEAEWG        G VE  G       F PP R G PP +
Sbjct:    1 MPSTRA--SALSTSASSESTVPSVIEEENGSKPLVSAQAKVTTQRRASKRRALETKKSQDDGEQDLLDVVPLP--------AVPSLFPVLDAHGNDDEEEDEESTDEEEEEEE--EESDDDITLVMTGPPRYRAFANKYIRPGLEGATGVADAEGGGAGGH------DKAPGEAKEGDEDKEEEAAEARRRALAWEGFGADEEEGKEG-GVGD-EEEADMFTNPLKHPAIRTYTQDFKDEDFPPTDQLRLRFKRTAFDIDITTVEEKGWNRTGASAADYFNYGFVEESWALYSEKQIRLRWLAQKKEAQTAQEEEKLLASLLEAQAAEGRKYEEEEEAEWGGKEEPLPDGQVEAAGDYPPPPPFPPPPR-GTPPGM 355
The following BLAST results are available for this feature:
BLAST of NO04G05080.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28927.12.100e-7757.45Pre-mRNA polyadenylation factor Fip1 [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G05080NO04G05080Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G05080.1NO04G05080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G05080.1.cds1NO04G05080.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G05080.1.cds2NO04G05080.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G05080.1.cds3NO04G05080.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G05080.1.cds4NO04G05080.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G05080.1.cds5NO04G05080.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G05080.1.cds6NO04G05080.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G05080.1 ID=NO04G05080.1|Name=NO04G05080.1|organism=Nannochloropsis oceanica|type=mRNA|length=1854bp
ATGCCCCCCAAACGGCCAACGAGGTCCGCAGCAAGTAGCGTTGCTGCCGC
AGACGTTTCACCTCCTGCTGCTAACGTAGAAGCAGCGGCCTCTGCTCCGG
CGAAGAGAAAGATGGGAGAAAAAGAGAAGATGAAGGAGGCGGCGGTTGAG
GCACCACCGCAACCTGCTCCATTAGACCCACGTGGACGTAAAGTAGCAGC
CGTCGTCGAGAATGAGGAAAAGGTGGGAGATGTAAACGAAGAGGAGATGG
AGGAGGAAGATGAGGAAAGCACAGACGAGGAGGAAGATGAGGAGGAATGC
GAGGACGAGAGTGATGATGACATCAAGCTGGTCATGACGGGGCCAGCGCG
GTACCGGTCGTTTGCCAACAAGTACGTGCGGCCAGGCCTCGAGGGAGGCG
CAGGGGCAGGCACAGCAGGAAGTACAGCAGCATCAGCAGCCGCTACTATG
GCGGAGGGAGGAAAAGCGGCAGGGGAAGAGAAAGAAGGGGAGGAGGAGGA
GGAAGCAGCGGAGGAACGTCGACGGGCTGCCGCTTGGGAGGGGTTCGGCG
CGGATGACGAGGAAGGGAAGGAGGGCGAGGGCGAGAGGGAGGGCGAGGAT
GAAGCCGACATGTTCACAGACCCGCTGAAGCACCCAGCCATCCGTGATTA
CCGCGAGAAGTTCCACGACGAGGACTTTCCCCCCACGGATCAGCTCCGCC
TCCGCTTCAAACGCACGGCCTTTGACATTGATATCAACACGGTGGAGGAG
AAGGGGTGGGACCGCAGCGGGGCCTCACCAGCGGATTATTTCAACTACGG
TTTCGTGGAGGAGAGCTGGGCGCTCTACTCGGAAAAACAGATTCGTCTCC
GTTGGCTGGCACAGAAGAGGGATGTACAGACCGCGCAGGAGGAGGAGATC
ATGCTAGCCTCCATCCTCGAAGCCAAGGCAGCCGAGGGCAGGAAGTTCGA
AGAGGAAGAAGAGGCCGAGTGGGGAAGGATAAGGGGAGGGGTGGAGGGAG
GAGGGGGTGGAGGGGAGGAGACGAATTTCTCACCTCCATTGAGGGAGGGG
TTGCCGCCGGCTATTGGCAGCAGCACCCGCACCACGGGGGCCCATCGCCA
CCTTTCCACGGCGGGGGAGGTAGAGGAGGAGGTAGCTTTCGGGGTGGGGG
TAGGAGGGGGGGTGGAAGGTTCTTTGAGGATGATTGGCGTGGAGGGGGAG
GACGAGGTGGAGGAAGGGGGAGAGGAAGGGGGGGGGCTCCACCGCATAAC
TTTGGCTTCCCACCCCATGGCTTGCCGCCGCCTGAATTTTATCATGAAAG
GGGTAGAGAGGGAAGGAGAGAAGAAGAACGAGACGCCCCCCCGCCTCCGC
CGAGAGGAGTGCCGCCACCACGTTGGGAGGAGACCAGGCAGGGAGGAGGG
GGAGGTGACAGGTGGGAAGAAGGAGGGAGGGAGAGCAGGGACCGACGGAG
TGGTGGTGGAGGAAGCGGCGCTGACGATGAGTGGTCGGTCTCCTCGAGGG
GAAGTGGCGGTCATCGAGAACGAGAAAGAGGGGAAAGGGATCGAAAGCGA
GGCCGGAGTCGGAGTCGGAGCCGGGAGAGTGAGCGCGGTGAGGATAGGAG
AGAGCGCCGTGAGCGGGGAGGAGGAGGTCGCGACGAAGAGCGCAAGCGGG
TACGGAGATGAAGAGCTAAAGAAAATGGAGACTGACTGTCTGCGAAGTAA
GTGTGGTTCTAAGTCAGGAGTGTTTTTTGTTGCTTATGTGTGGCTTCCCA
AGGCACAGACGGAGGAGGTTTTCAAATCCTCAACTGCCATCTTCGGCGGT
TGCGTGCTTGTGGCGTTTGCGTTTTTGAGTCCCCTAGCTGTGTTCCCAGC
TTGA
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protein sequence of NO04G05080.1

>NO04G05080.1-protein ID=NO04G05080.1-protein|Name=NO04G05080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=618bp
MPPKRPTRSAASSVAAADVSPPAANVEAAASAPAKRKMGEKEKMKEAAVE
APPQPAPLDPRGRKVAAVVENEEKVGDVNEEEMEEEDEESTDEEEDEEEC
EDESDDDIKLVMTGPARYRSFANKYVRPGLEGGAGAGTAGSTAASAAATM
AEGGKAAGEEKEGEEEEEAAEERRRAAAWEGFGADDEEGKEGEGEREGED
EADMFTDPLKHPAIRDYREKFHDEDFPPTDQLRLRFKRTAFDIDINTVEE
KGWDRSGASPADYFNYGFVEESWALYSEKQIRLRWLAQKRDVQTAQEEEI
MLASILEAKAAEGRKFEEEEEAEWGRIRGGVEGGGGGGEETNFSPPLREG
LPPAIGSSTRTTGAHRHLSTAGEVEEEVAFGVGVGGGVEGSLRMIGVEGE
DEVEEGGEEGGGLHRITLASHPMACRRLNFIMKGVEREGEKKNETPPRLR
REECRHHVGRRPGREEGEVTGGKKEGGRAGTDGVVVEEAALTMSGRSPRG
EVAVIENEKEGKGIESEAGVGVGAGRVSAVRIGESAVSGEEEVATKSASG
YGDEELKKMETDCLRSKCGSKSGVFFVAYVWLPKAQTEEVFKSSTAIFGG
CVLVAFAFLSPLAVFPA*
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mRNA from alignment at chr4:1415241..1417987+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G05080.1 ID=NO04G05080.1|Name=NO04G05080.1|organism=Nannochloropsis oceanica|type=mRNA|length=2747bp|location=Sequence derived from alignment at chr4:1415241..1417987+ (Nannochloropsis oceanica)
ATGCCCCCCAAACGGCCAACGAGGTAGGGAAAGCACAGAAAACCAAGGGC
TGCGTTCATTATAATATCGTCATCCCCATCATGTGCCCCTCTCTCTCCCT
CCCTTTCCTTCCAGGTCCGCAGCAAGTAGCGTTGCTGCCGCAGACGTTTC
ACCTCCTGCTGCTAACGTAGAAGCAGCGGCCTCTGCTCCGGCGAAGAGAA
AGATGGGAGAAAAAGAGAAGATGAAGGAGGCGGCGGTTGAGGCACCACCG
CAACCTGCTCCATTAGACCCACGTGGACGTAAAGTAGCAGCCGTCGTCGA
GAATGAGGAAAAGGTGGGAGATGTAAACGAAGAGGAGATGGAGGAGGAAG
ATGAGGAAAGCACAGACGAGGAGGAAGATGAGGAGGAATGCGAGGACGAG
AGTGATGATGACATCAAGCTGGTCATGACGGGGCCAGCGCGGTACCGGTC
GTTTGCCAACAAGTACGTGCGGCCAGGCCTCGAGGGAGGCGCAGGGGCAG
GCACAGCAGGAAGTACAGCAGCATCAGCAGCCGCTACTATGGCGGAGGGA
GGAAAAGCGGCAGGGGAAGAGAAAGAAGGGGAGGAGGAGGAGGAAGCAGC
GGAGGAACGGTAGGTTGTTTTTGGGGTGTGTGGAGATACGGTCTCTTAGT
TCTCTGCTGTCATAATGCTCACCATCACTCTTTGCAATCTCACCGTTACA
GTCGACGGGCTGCCGCTTGGGAGGGGTTCGGCGCGGATGACGAGGAAGGG
AAGGAGGGCGAGGGCGAGAGGGAGGGCGAGGATGAAGCCGACATGTTCAC
AGACCCGCTGAAGCACCCAGGTAAGGCCAGAGGGAGAGGGAGGGAGGGAG
TGAAGGAGGGAGTGAAGGAGGGAGGGAGGGAGGGAGAGACGACAGAATAC
TAGCAAGGAAATTTCATCTCCTCTGACGCTCTTGTAATTTTTACTCATCC
CTCTCTGTTCCCCAACTCCTCCCCCCTCCTTCCTTCCCGCCCTCCCCTCG
TAGCCATCCGTGATTACCGCGAGAAGTTCCACGACGAGGACTTTCCCCCC
ACGGATCAGCTCCGCCTCCGCTTCAAACGCACGGCCTTTGACATTGATAT
CAACACGGTGGAGGAGAAGGGGTGGGACCGCAGCGGGGCCTCACCAGCGG
ATTATTTCAACTACGGTTTCGTGGAGGAGAGCTGGGCGGTGCGTCTCCAC
TTGCCCTCCTTCCCGCCTACCTTCCCTCCCTCTCTCCCTCGCTCTGCATT
CGCAGTACCTGCCATTCATTTCTACTCACATTCATCGGCTGTCTTGTCCT
GTAGCAGAAGTAGCAGGGGCGACCCATGTACACTCACCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTTAAGCTCTACTCGGAAAAACAGATTCG
TCTCCGTTGGCTGGCACAGAAGAGGGATGTACAGACCGCGCAGGAGGAGG
AGATCATGCTAGCCTCCATCCTCGAAGCCAAGGCAGCCGAGGGCAGGAAG
TTCGAAGAGGAAGAAGAGGCCGAGTGGGGAAGGATAAGGGGAGGGGTGGA
GGGAGGAGGGGGTGGAGGGGAGGAGACGAATTTCTCACCTCCATTGAGGG
AGGGGTTGCCGCCGGCTATGTACCGGGGAGAGGGAGGGAGGAGAGGAGGG
CGAGGAGGTGGGGGAGGACCGTCGGCGCCCTTTCATCCTGACCATGGAGG
TATAGAAAGAGGGAGGGAAGGAAATAAGGAAGGAGGGAGGGAGGGAGGGA
GAGTATCCTTTGTTTGTGCGAAGAGAGACACCATTTGGCTTTGTCCTTTT
TATCATTGTTGTGAAGACACCCGGACCTCAATCACTAGAATAACACGCAT
GCATCCATCCTTCCACAGGTGGTCCTCCCCCTCACTGGCATGAAGACGGC
CAGGGAGGCCCTCCCCCCCTTCCTCCCCCCCTTCCTCCCCCTCTTCCTCC
TCCGCAGTGGCAGCAGCACCCGCACCACGGGGGCCCATCGCCACCTTTCC
ACGGCGGGGGAGGTAGAGGAGGAGGTAGCTTTCGGGGTGGGGGTAGGAGG
GGGGGTGGAAGGTTCTTTGAGGATGATTGGCGTGGAGGGGGAGGACGAGG
TGGAGGAAGGGGGAGAGGAAGGGGGGGGGCTCCACCGCATAACTTTGGCT
TCCCACCCCATGGCTTGCCGCCGCCTGAATTTTATCATGAAAGGGGTAGA
GAGGGAAGGAGAGAAGAAGAACGAGACGCCCCCCCGCCTCCGCCGAGAGG
AGTGCCGCCACCACGTTGGGAGGAGACCAGGCAGGGAGGAGGGGGAGGTG
ACAGGTGGGAAGAAGGAGGGAGGGAGAGCAGGGACCGACGGAGTGGTGGT
GGAGGAAGCGGCGCTGACGATGAGTGGTCGGTCTCCTCGAGGGGAAGTGG
CGGTCATCGAGAACGAGAAAGAGGGGAAAGGGATCGAAAGCGAGGCCGGA
GTCGGAGTCGGAGCCGGGAGAGTGAGCGCGGTGAGGATAGGAGAGAGCGC
CGTGAGCGGGGAGGAGGAGGTCGCGACGAAGAGCGCAAGCGGGTACGGAG
ATGAAGAGCTAAAGAAAATGGAGACTGACTGTCTGCGAAGTAAGTGTGGT
TCTAAGTCAGGAGTGTTTTTTGTTGCTTATGTGTGGCTTCCCAAGGCACA
GACGGAGGAGGTTTTCAAATCCTCAACTGCCATCTTCGGCGGTTGCGTGC
TTGTGGCGTTTGCGTTTTTGAGTCCCCTAGCTGTGTTCCCAGCTTGA
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Coding sequence (CDS) from alignment at chr4:1415241..1417987+

>NO04G05080.1 ID=NO04G05080.1|Name=NO04G05080.1|organism=Nannochloropsis oceanica|type=CDS|length=1854bp|location=Sequence derived from alignment at chr4:1415241..1417987+ (Nannochloropsis oceanica)
ATGCCCCCCAAACGGCCAACGAGGTCCGCAGCAAGTAGCGTTGCTGCCGC
AGACGTTTCACCTCCTGCTGCTAACGTAGAAGCAGCGGCCTCTGCTCCGG
CGAAGAGAAAGATGGGAGAAAAAGAGAAGATGAAGGAGGCGGCGGTTGAG
GCACCACCGCAACCTGCTCCATTAGACCCACGTGGACGTAAAGTAGCAGC
CGTCGTCGAGAATGAGGAAAAGGTGGGAGATGTAAACGAAGAGGAGATGG
AGGAGGAAGATGAGGAAAGCACAGACGAGGAGGAAGATGAGGAGGAATGC
GAGGACGAGAGTGATGATGACATCAAGCTGGTCATGACGGGGCCAGCGCG
GTACCGGTCGTTTGCCAACAAGTACGTGCGGCCAGGCCTCGAGGGAGGCG
CAGGGGCAGGCACAGCAGGAAGTACAGCAGCATCAGCAGCCGCTACTATG
GCGGAGGGAGGAAAAGCGGCAGGGGAAGAGAAAGAAGGGGAGGAGGAGGA
GGAAGCAGCGGAGGAACGTCGACGGGCTGCCGCTTGGGAGGGGTTCGGCG
CGGATGACGAGGAAGGGAAGGAGGGCGAGGGCGAGAGGGAGGGCGAGGAT
GAAGCCGACATGTTCACAGACCCGCTGAAGCACCCAGCCATCCGTGATTA
CCGCGAGAAGTTCCACGACGAGGACTTTCCCCCCACGGATCAGCTCCGCC
TCCGCTTCAAACGCACGGCCTTTGACATTGATATCAACACGGTGGAGGAG
AAGGGGTGGGACCGCAGCGGGGCCTCACCAGCGGATTATTTCAACTACGG
TTTCGTGGAGGAGAGCTGGGCGCTCTACTCGGAAAAACAGATTCGTCTCC
GTTGGCTGGCACAGAAGAGGGATGTACAGACCGCGCAGGAGGAGGAGATC
ATGCTAGCCTCCATCCTCGAAGCCAAGGCAGCCGAGGGCAGGAAGTTCGA
AGAGGAAGAAGAGGCCGAGTGGGGAAGGATAAGGGGAGGGGTGGAGGGAG
GAGGGGGTGGAGGGGAGGAGACGAATTTCTCACCTCCATTGAGGGAGGGG
TTGCCGCCGGCTATTGGCAGCAGCACCCGCACCACGGGGGCCCATCGCCA
CCTTTCCACGGCGGGGGAGGTAGAGGAGGAGGTAGCTTTCGGGGTGGGGG
TAGGAGGGGGGGTGGAAGGTTCTTTGAGGATGATTGGCGTGGAGGGGGAG
GACGAGGTGGAGGAAGGGGGAGAGGAAGGGGGGGGGCTCCACCGCATAAC
TTTGGCTTCCCACCCCATGGCTTGCCGCCGCCTGAATTTTATCATGAAAG
GGGTAGAGAGGGAAGGAGAGAAGAAGAACGAGACGCCCCCCCGCCTCCGC
CGAGAGGAGTGCCGCCACCACGTTGGGAGGAGACCAGGCAGGGAGGAGGG
GGAGGTGACAGGTGGGAAGAAGGAGGGAGGGAGAGCAGGGACCGACGGAG
TGGTGGTGGAGGAAGCGGCGCTGACGATGAGTGGTCGGTCTCCTCGAGGG
GAAGTGGCGGTCATCGAGAACGAGAAAGAGGGGAAAGGGATCGAAAGCGA
GGCCGGAGTCGGAGTCGGAGCCGGGAGAGTGAGCGCGGTGAGGATAGGAG
AGAGCGCCGTGAGCGGGGAGGAGGAGGTCGCGACGAAGAGCGCAAGCGGG
TACGGAGATGAAGAGCTAAAGAAAATGGAGACTGACTGTCTGCGAAGTAA
GTGTGGTTCTAAGTCAGGAGTGTTTTTTGTTGCTTATGTGTGGCTTCCCA
AGGCACAGACGGAGGAGGTTTTCAAATCCTCAACTGCCATCTTCGGCGGT
TGCGTGCTTGTGGCGTTTGCGTTTTTGAGTCCCCTAGCTGTGTTCCCAGC
TTGA
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Synonyms
Publications