NO04G05060, NO04G05060 (gene) Nannochloropsis oceanica

Overview
NameNO04G05060
Unique NameNO04G05060
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1979
Alignment locationchr4:1408388..1410366 -

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Properties
Property NameValue
DescriptionDrug/metabolite transporter
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1408388..1410366 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR000620EamA_dom
Homology
BLAST of NO04G05060 vs. NCBI_GenBank
Match: XP_005853998.1 (hypothetical protein NGA_0480100 [Nannochloropsis gaditana CCMP526] >EKU22367.1 hypothetical protein NGA_0480100 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 286.6 bits (732), Expect = 9.100e-74
Identity = 156/280 (55.71%), Postives = 209/280 (74.64%), Query Frame = 0
Query:    1 MLASVAVIYGTNFGAIKYLDEANVDVSIVTAIRFALASLALCPFLYKAPWPVVLRGIEVGVWVSVGYIAQAIGLQTTQASKSAFICSLAVVVVPIVNAIIYKKKAPPTTWLASLLAVAGVGLLTLEGKGNPPCIGDLWSLGQPIGFGIAFVRTEQCMQANKGEALAMTASQMAAVLACSILWVSFT--LTSNTPDLSVLYEPVNLAALFYTGVITSGIAVVAESVALAHISAEETTVILSTEPLWAALFGSVILGETMSGFGYLGGAVILLGCLVTQLKL 279
            ML  VA+++G+NFGA+KYLD   VDVS++T++RF LAS+AL PFL+    PV+  G+EVG+WV++GYI QAIGL+TT+ASKSAFICSL VVVVP++  ++ KK A PTTW A  LAV GVGLLTL+G    P IGDLWSLGQP+GFGIAF+R E  M+   G+A+ + A+QM +V   S +W + T  +  NT DLS+L++  +  +L YTG+I+S +AVV ES AL ++S+EET++I STEPL+AA   +V+LGE +   G LGG VIL  CL+TQ+ L
Sbjct:   69 MLVVVALLWGSNFGALKYLDTCGVDVSLLTSMRFLLASVALLPFLWGKGMPVLKAGLEVGLWVTLGYITQAIGLETTEASKSAFICSLTVVVVPLIQGLLGKKIA-PTTWTACGLAVLGVGLLTLQG-ATGPVIGDLWSLGQPLGFGIAFMRIEHYMKQLPGKAIPLAAAQMISVFGVSAVWAAVTTGMFQNTGDLSILFDTPHFLSLLYTGLISSALAVVIESAALEYVSSEETSIIFSTEPLFAAATSAVVLGERLKPSGILGGFVILSACLLTQVDL 346          
BLAST of NO04G05060 vs. NCBI_GenBank
Match: EWM23301.1 (Drug/metabolite transporter, partial [Nannochloropsis gaditana])

HSP 1 Score: 286.6 bits (732), Expect = 9.100e-74
Identity = 156/280 (55.71%), Postives = 209/280 (74.64%), Query Frame = 0
Query:    1 MLASVAVIYGTNFGAIKYLDEANVDVSIVTAIRFALASLALCPFLYKAPWPVVLRGIEVGVWVSVGYIAQAIGLQTTQASKSAFICSLAVVVVPIVNAIIYKKKAPPTTWLASLLAVAGVGLLTLEGKGNPPCIGDLWSLGQPIGFGIAFVRTEQCMQANKGEALAMTASQMAAVLACSILWVSFT--LTSNTPDLSVLYEPVNLAALFYTGVITSGIAVVAESVALAHISAEETTVILSTEPLWAALFGSVILGETMSGFGYLGGAVILLGCLVTQLKL 279
            ML  VA+++G+NFGA+KYLD   VDVS++T++RF LAS+AL PFL+    PV+  G+EVG+WV++GYI QAIGL+TT+ASKSAFICSL VVVVP++  ++ KK A PTTW A  LAV GVGLLTL+G    P IGDLWSLGQP+GFGIAF+R E  M+   G+A+ + A+QM +V   S +W + T  +  NT DLS+L++  +  +L YTG+I+S +AVV ES AL ++S+EET++I STEPL+AA   +V+LGE +   G LGG VIL  CL+TQ+ L
Sbjct:   85 MLVVVALLWGSNFGALKYLDTCGVDVSLLTSMRFLLASVALLPFLWGKGMPVLKAGLEVGLWVTLGYITQAIGLETTEASKSAFICSLTVVVVPLIQGLLGKKIA-PTTWTACGLAVLGVGLLTLQG-ATGPVIGDLWSLGQPLGFGIAFMRIEHYMKQLPGKAIPLAAAQMISVFGVSAVWAAVTTGMFQNTGDLSILFDTPHFLSLLYTGLISSALAVVIESAALEYVSSEETSIIFSTEPLFAAATSAVVLGERLKPSGILGGFVILSACLLTQVDL 362          
BLAST of NO04G05060 vs. NCBI_GenBank
Match: XP_002183994.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC44663.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 184.9 bits (468), Expect = 3.700e-43
Identity = 123/300 (41.00%), Postives = 170/300 (56.67%), Query Frame = 0
Query:    1 MLASVAVIYGTNFGAIKYLDEANVDVSIVTAIRFALASLALCPFLYKAPWP------------------VVLRGIEVGVWVSVGYIAQAIGLQTTQASKSAFICSLAVVVVPIVNAIIYKKKAPPTTWLASLLAVAGVGLLTLEGKGNPP---CIGDLWSLGQPIGFGIAFVRTEQCMQANKGEALAMTASQMAAVLACSILWVSFTLTS--NTPDLSVLYEPVN-LAALFYTGVITSGIAVVAESVALAHISAEETTVILSTEPLWAALFGSVILGETMSGFGYLGGAVILLGCLVTQL 277
            +L + A +YGTNF  +K L E ++ V +  A+RF +A+LA  P+L+    P                    + G+EVG W S+GY+AQA+GL TT ASKSAFICSLAVVVVP+++ +  K   P  T + + +A+AGV +L L G          GD  SL QPI FGIAF R E  MQ    EA   TA+Q+  V   S+ +  FT     N   L       N LA+LF+TG I++ + V  E++AL  +SA ETT+I STEPLW   F ++I+GET+     +G  +IL GC+ + L
Sbjct:  174 LLIAAAALYGTNFSLVKLLGETDLPVGVSGALRFGMAALATSPWLFAKAKPNDDGTLPTTGSDMSVEMAATMAGLEVGFWNSIGYMAQAVGLATTAASKSAFICSLAVVVVPLLDFLAGKLLLPRQT-VGAFMALAGVAILELGGMSAADFTLTFGDAASLLQPICFGIAFWRMEAAMQRFPNEANRSTAAQLLMVFLVSLTFGLFTDPGAFNVAQLQAWLSDTNILASLFWTGCISTALTVYMETLALKTLSAAETTLIFSTEPLWGTAFAALIMGETLGWESAVGAVLILSGCVFSNL 472          
BLAST of NO04G05060 vs. NCBI_GenBank
Match: OLP83389.1 (hypothetical protein AK812_SmicGene35847 [Symbiodinium microadriaticum])

HSP 1 Score: 184.5 bits (467), Expect = 4.800e-43
Identity = 114/275 (41.45%), Postives = 165/275 (60.00%), Query Frame = 0
Query:    5 VAVIYGTNFGAIKYLD-EANVDVSIVTAIRFALASLALCPFLYKAPWPVVL-RGIEVGVWVSVGYIAQAIGLQTTQASKSAFICSLAVVVVPIVNAIIYKKKAPPTTWLASLLAVAGVGLLTLEGKGNPPCIGDLWSLGQPIGFGIAFVRTEQCMQANKGEALAMTASQMAAVLACSILWVSFTLTSNTPDLS-VLYEPVNLAALFYTGVITSGIAVVAESVALAHISAEETTVILSTEPLWAALFGSVILGETMSGFGYLGGAVILLGCLVTQL 277
            + +++ TNF  IK +  +  V   +    RF +A+  L P++ +A  P VL R +E G W++ GYI QA+GL TT ASKS FIC+L VV V ++  I  KKK  P T +A+ LAV GVG L L G      IGDL SL  P+GFG+ ++R E+ M  N  +AL +TA ++  V A S  W  + LT+ +PDL  VL     L  + YTG++T+G+A+V ESVA   I A   +VI +TEPLWAA+F   ++ E  S    +GGA+++   ++ +L
Sbjct:  104 LCMLWATNFAVIKEITAQPGVTTQMYAVSRFTVAAGLLSPWISQASSPKVLARAVECGAWIAFGYIGQAVGLMTTTASKSCFICTLNVVFVSLIVGIT-KKKFDPQTVMAAALAVTGVGFLELAG-SQQFVIGDLISLAMPVGFGMGYIRLEEIMAENPKDALPVTAVKLGVVAAAS--WAYYALTTGSPDLEPVLASSTALTGILYTGLVTTGLALVVESVAFRFIDATSASVIFTTEPLWAAIFAVWLINEPFSAVDAIGGALVIGANVIKEL 374          
BLAST of NO04G05060 vs. NCBI_GenBank
Match: CEM03567.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 179.1 bits (453), Expect = 2.000e-41
Identity = 108/285 (37.89%), Postives = 186/285 (65.26%), Query Frame = 0
Query:    1 MLASVAVIYGTNFGAIKYL-----DEANVDVSIVTAIRFALASLALCPFLYKAPWPVVLRGIEVGVWVSVGYIAQAIGLQTTQASKSAFICSLAVVVVPIVNAIIYKKKAPPTTWLASLLAVAGVGLLTLEGKGNPPCIGDLWSLGQPIGFGIAFVRTEQCMQANKGEALAMTASQMAAVLACSILWV---SFTLTSNTPDLSVLY-EPVNLAALFYTGVITSGIAVVAESVALAHISAEETTVILSTEPLWAALFGSVILGETMSGFGYLGGAVILLGCLVTQL 277
            +L  +  ++ +NF  IK       + A V+ S+  A RF++A+LAL PFL  AP   +L G E G+++++GYI QA+ L TT A+K+AFICSL VV V +V++++ K+    +   A+LLAVAGVG+L L G    P  GDL++L QP+ FG++++R  +  +  KG A+A++A+Q+A V  CS++W    S  L +    L+ L+ +P  L ++ YTG+IT+ ++++ ++ A + +   + +VI+S+EPL+AA+   ++LGE++    +LGGA+I+  C++++L
Sbjct:  129 VLVVMTFLWASNFPVIKLALGGGEEVAAVEPSVYAAGRFSIAALALSPFLLGAPIGALLGGAECGLYIALGYIGQALALATTTANKAAFICSLQVVFVVLVSSVL-KRHLDRSALGAALLAVAGVGVLELRG-ARAPVEGDLFALAQPVFFGLSYIRLGKVSRNFKGSAVAISAAQVAVVGLCSLIWAAVQSGGLDTMLASLAPLWQQPPLLTSIAYTGLITTSLSIILQTQAFSKVKPTDASVIISSEPLFAAMLSVLLLGESLGQSNFLGGALIIAACILSEL 411          
BLAST of NO04G05060 vs. NCBI_GenBank
Match: XP_005841807.1 (hypothetical protein GUITHDRAFT_149872 [Guillardia theta CCMP2712] >EKX54827.1 hypothetical protein GUITHDRAFT_149872 [Guillardia theta CCMP2712])

HSP 1 Score: 178.7 bits (452), Expect = 2.700e-41
Identity = 117/307 (38.11%), Postives = 175/307 (57.00%), Query Frame = 0
Query:    1 MLASVAVIYGTNFGAIKYLDEANVDVSIVTAIRFALASLALCPFLYKAPWPVVLRGIEVGVWVSVGYIAQAIGLQTTQASKSAFICSLAVVVVPIVNAIIYKKKAPPTTWLASLLAVAGVGLLTLEGKGNPPCIGDLWSLGQPIGFGIAFVRTEQCMQANKGEALAMTASQMAAVLACSILW-VSFTLTSNTPDLSVLYEPVN-------LAALFYTGVITSGIAVVAESVALAHISAEETTVILSTEPLWAALFGSVILGETMSGFGYLGGAVILLGCL---VTQLKLPKTLEKLLKPWGEGVEEA 297
            ++  VA +YGTNFG++K L E+++D S    +RF +ASLA+ P L       +  G+E+G++  +GY AQ IGLQT  AS  AF+CSLAVVV P+++ ++   +     W +  LA+AG  +L L G  + P  GDLW+L QP+ FG  F R E+ M+    +A  +TA Q+  V   S++W VS T+        V+ E ++       L AL +TG+ T+ I V  E+ AL  +++ ETTV+ +TEPLW   F   +LGE +    YLGG +IL  CL   V   KL + +E + +  G  V  +
Sbjct:   16 VILGVAALYGTNFGSVKIL-ESSLDPSAAAFVRFGIASLAMLPLLKNLRVETIKPGLEIGMFAFLGYFAQGIGLQTCHASTMAFLCSLAVVVCPLLD-VLEGSRLGAKAWTSVGLAIAGTAVLELAG-ADMPGTGDLWALIQPLAFGAGFWRCERVMRELPDQAAPLTAMQILTVGMMSMMWMVSDTVMHPGSAGHVMQEILHSFHDGHLLLALLWTGIATTAITVGLETWALGKLTSAETTVLFATEPLWGTAFAHAVLGEQVGSNAYLGGTLILAACLFRVVDGNKLQQAVESVKEEAGRVVSRS 319          
BLAST of NO04G05060 vs. NCBI_GenBank
Match: XP_005827424.1 (hypothetical protein GUITHDRAFT_88716 [Guillardia theta CCMP2712] >EKX40444.1 hypothetical protein GUITHDRAFT_88716 [Guillardia theta CCMP2712])

HSP 1 Score: 175.6 bits (444), Expect = 2.300e-40
Identity = 102/277 (36.82%), Postives = 164/277 (59.21%), Query Frame = 0
Query:    5 VAVIYGTNFGAIKYLDEANVDVSIVTAIRFALASLALCPFLYKAPWPVVLRGIEVGVWVSVGYIAQAIGLQT-TQASKSAFICSLAVVVVPIVNAIIYKKKAPPTTWLASLLAVAGVGLLTLEGKGNPPCIGDLWSLGQPIGFGIAFVRTEQCMQANKGEALAMTASQMAAVLACSILWVSFTLTSNTPDLSVLYEPVN----LAALFYTGVITSGIAVVAESVALAHISAEETTVILSTEPLWAALFGSVILGETMSGFGYLGGAVILLGCLVTQL 277
            VA +YGTNFG+IK + EA +D S+   +RF LA  AL PFL   P  ++  G+E+G+WV++GY+ Q IGL T   AS +AF+CSLAVV+ P+++ +   +     +W+A+ LAV GVG+L + G  + P IGDLW+L QPIGFG+ F + E+ M+   G+   +TA Q+  V    ++W +       PD++ + E ++      ++ +TG+IT+ + V+ +                STEP+W A F   +LGE +    ++GG++I+  CL + +
Sbjct:    2 VAALYGTNFGSIKIMQEA-LDPSVAAILRFTLALAALSPFLKTVPRDMIKPGVEIGLWVAMGYVVQGIGLNTGADASTAAFLCSLAVVICPLLD-LFAGETVKAKSWIAAALAVFGVGVLEIGGT-SQPSIGDLWALAQPIGFGMGFWKIEKVMRNFPGKGPQLTAIQLVVVWLTGLIW-ALVDNGGLPDVATVTESLSQMPVAVSVVWTGLITTALTVLLQXXXXXXXXXXXXXXXXSTEPIWGAAFAHAVLGEAIGMNTWVGGSLIIAACLCSSV 274          
BLAST of NO04G05060 vs. NCBI_GenBank
Match: OEU15763.1 (hypothetical protein FRACYDRAFT_209199 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 174.1 bits (440), Expect = 6.500e-40
Identity = 110/300 (36.67%), Postives = 165/300 (55.00%), Query Frame = 0
Query:    1 MLASVAVIYGTNFGAIKYLDEANVDVSIVTAIRFALASLALCPFLYKAP---------WPVVLRGIEVGVWVSVGYIAQAIGLQTTQASKSAFICSLAVVVVPIVNAIIYKKKAPPTTWLASLLAVAGVGLLTLEGKGNPP-----------CIGDLWSLGQPIGFGIAFVRTEQCMQANKGEALAMTASQMAAVLACSILWVSFTLTSNT----PDLSVLYEPVNLAALFYTGVITSGIAVVAESVALAHISAEETTVILSTEPLWAALFGSVILGETMSGFGYLGGAVILLGCLVTQL 277
            +L   A +YGTNF  +K L +  +   +  ++RFALASL   P+L+            W     G EVG+W SVGYI+QA+GL+TTQAS SAF+CSLAVV VP+++     K+     W+ ++LAV GV +L L G G                GDL SL QP+ FGI F + E+ ++    EA  +TA+Q+ A+   S+ +   ++ ++T    P +     P  + +LF+TGVITS + +  E+ A+  +SA E TVI +TEP+W   F +V++ E       +G A I+  C  + L
Sbjct:   76 LLIGAAALYGTNFSLVKLLGDV-MPEGVSLSLRFALASLVTLPWLFSEAGAELVDGDVWMATWLGFEVGLWNSVGYISQAVGLETTQASTSAFLCSLAVVTVPLLD-FFTGKRIESRQWIGAILAVIGVAVLELNGAGGSGEAVASQSSSFLSTGDLLSLVQPLAFGIGFWKVEKALERYPTEARRLTAAQLLAIFCASVGFGLSSIDASTLQSYPWMDWFTNPSIMFSLFWTGVITSALTIYMENKAMETLSAAEATVIFATEPIWGTAFAAVVMSEQFGMNSAVGAAFIMSACFYSNL 373          
BLAST of NO04G05060 vs. NCBI_GenBank
Match: GAX11848.1 (hypothetical protein FisN_20Lh096 [Fistulifera solaris])

HSP 1 Score: 172.2 bits (435), Expect = 2.500e-39
Identity = 111/300 (37.00%), Postives = 173/300 (57.67%), Query Frame = 0
Query:    1 MLASVAVIYGTNFGAIKYLDE-ANVDVSIVTAIRFALASLALCPFL------YKAPW------PVVLRGIEVGVWVSVGYIAQAIGLQTTQASKSAFICSLAVVVVPIVNAIIYKKKAPPTTWLASLLAVAGVGLLTLE----GKGNPPCIGDLWSLGQPIGFGIAFVRTEQCMQANKGEALAMTASQMAAVLACSILWVSFTLTS--NTPDL-SVLYEPVNLAALFYTGVITSGIAVVAESVALAHISAEETTVILSTEPLWAALFGSVILGETMSGFGYLGGAVILLGCLVTQLKLPK 281
            ++   A +YG+NF  +K + E   + V + + +RF LA++A  P+L       +  W        ++ G EVG+W  V YIAQA+GL+TT ASKSAF CS+AVVVVP+++     +K         +LA+ GVG L L       G+    GDL SL QP+ FG+AF R E  M     +A+  TA+Q++AV   S ++ +F      + P + S+L +PV LA L +TG++T+ + +  ESVA+  +SA ETT++LSTEP+  +LF + ++GE +      G  +IL+ C+++ L   K
Sbjct:   77 LILLAATLYGSNFPLVKMMGENTPLSVGMTSTLRFGLAAIATSPWLLNNINQIRKEWSTSPEAAAIVAGFEVGLWNCVAYIAQAVGLETTLASKSAFFCSMAVVVVPLLDFFFKGQKIQTNQIAGLVLAIVGVGALELGDMDLASGSLLSHGDLVSLIQPLAFGMAFWRMEAAMHKYPNQAMRATAAQLSAVFLGSAIFATFFEEGGLDVPLVQSILTDPVTLAPLLWTGLVTTALTIYMESVAMKTLSASETTLLLSTEPVSGSLFAAALMGERLGPNAMFGSGLILVSCIISTLGFDK 376          
BLAST of NO04G05060 vs. NCBI_GenBank
Match: GAX23890.1 (hypothetical protein FisN_20Hh096 [Fistulifera solaris])

HSP 1 Score: 169.1 bits (427), Expect = 2.100e-38
Identity = 113/307 (36.81%), Postives = 175/307 (57.00%), Query Frame = 0
Query:    1 MLASVAVIYGTNFGAIKYLDE-ANVDVSIVTAIRFALASLALCPFL------YKAPW------PVVLRGIEVGVWVSVGYIAQAIGLQTTQASKSAFICSLAVVVVPIVNAIIYKKKAPPTTWLASLLAVAGVGLLTLE----GKGNPPCIGDLWSLGQPIGFGIAFVRTEQCMQANKGEALAMTASQMAAVLACSILWVSFTLTS--NTPDL-SVLYEPVNLAALFYTGVITSGIAVVAESVALAHISAEETTVILSTEPLWAALFGSVILGETMSGFGYLGGAVILLGCLVTQLKLPKTLEKLLK 288
            ++   A +YG+NF  +K + E   + V + + +RF LA++A  P+L       +  W        ++ G EVG+W  V YIAQA+GL+TT ASKSAF CS+AVVVVP+++     +K         +LA+ GVG L L             GDL SL QP+ FG+AF R E  M     +A+  TA+Q++AV   S ++ +F      + P + S+L +PV LA L +TG++T+ + +  ESVA+  +SA ETT++LSTEP+  +LF + ++GE +      G  +IL+ C+++ L   K L+  LK
Sbjct:  633 LILLAATLYGSNFPLVKMMGENTPLSVGMTSTLRFGLAAIATSPWLLNNINQIRKEWSTAPEAAAMVAGFEVGLWNCVAYIAQAVGLETTLASKSAFFCSMAVVVVPLLDFFFKGQKIQTNQIAGLVLAIVGVGALELGDMDLASRTLLSYGDLVSLIQPLAFGMAFWRMEAAMHKYPNQAMRATAAQLSAVFLGSAVFATFFEEGGLDVPLVQSILTDPVTLAPLLWTGLVTTALTIYMESVAMKTLSAAETTLLLSTEPVSGSLFAAALMGERLGPNAMFGSGLILVSCIISTLGFDK-LQSFLK 938          
The following BLAST results are available for this feature:
BLAST of NO04G05060 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005853998.19.100e-7455.71hypothetical protein NGA_0480100 [Nannochloropsis ... [more]
EWM23301.19.100e-7455.71Drug/metabolite transporter, partial [Nannochlorop... [more]
XP_002183994.13.700e-4341.00predicted protein [Phaeodactylum tricornutum CCAP ... [more]
OLP83389.14.800e-4341.45hypothetical protein AK812_SmicGene35847 [Symbiodi... [more]
CEM03567.12.000e-4137.89unnamed protein product [Vitrella brassicaformis C... [more]
XP_005841807.12.700e-4138.11hypothetical protein GUITHDRAFT_149872 [Guillardia... [more]
XP_005827424.12.300e-4036.82hypothetical protein GUITHDRAFT_88716 [Guillardia ... [more]
OEU15763.16.500e-4036.67hypothetical protein FRACYDRAFT_209199 [Fragilario... [more]
GAX11848.12.500e-3937.00hypothetical protein FisN_20Lh096 [Fistulifera sol... [more]
GAX23890.12.100e-3836.81hypothetical protein FisN_20Hh096 [Fistulifera sol... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL075nonsL075Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR107ngnoR107Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007609NSK007609Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G05060.1NO04G05060.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579807gene_2298Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G05060.1NO04G05060.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G05060 ID=NO04G05060|Name=NO04G05060|organism=Nannochloropsis oceanica|type=gene|length=1979bp
CAGGTGGCCTACAAATGCCCTGCATTTCCATTTAGGCACTTAGGTCACAG
GCACCTACTTCCCTGCCCGCCACCGCTGTTCATTTTCGCACTTCTGAGCA
AGGTCAACTTCACTTCCACAAGATGCAAACGGAGCAAGCAGCAATACCCC
CGGCGCAGCAATCAAGATGGCGGGCTACCGGCGCGGTGCCCCTATCGATA
ATCCTTATCCTTCTTTCCATCATTTTAATGACGGAACCCACGGCCAGCTC
GACAGGCAGTGTTGGGGCCGGCAACAGCAGATGGATAGCAACGACGTCTG
GGCACCCAATAAGAAGAAGACATCTAGGGCTAGAGACAGTCATCAGCAGC
GGCCTGTGTTCCTCATTTGTCCCACCTCCGCCTCCCCCACCATCATCGTC
ATCATCATTCCCCTCCTCTGGCAACGGTGTTTCAAATACAAGGAAAAGAA
GAAGAAAAAGTGGTGATGACAGGAACACACCCCTCAGCCGGACAGGCAGC
ACGCGGCGGAGCAGCAAGCAAATGCGCTTTTCGCCTTTCGAGGCCACGCC
TTCCTCCTCTTTCTCCTCATCCTCCTCCTCCTCCTTTTCTTCCATCCCAA
ACTCCAAGAGCCGCAAGGTCCTCTTCTCTGCCTTGCAAGCCCAATCTTCA
ACACTACCACGTGAGGCCCCCGCCCTTCCTCCCCCTCTCCCTCCCTCCTT
CCTCTCCACCGCCCCCTCCACCCGCGGCAAAACCATTTTCAGTGGCCTCC
AACAAATCTGGACGAGTCTTAAAGGCGGCAGGGGGAAGGCGGACCCTGAT
GGGGGGGGGAAGGCGGGGGAGGGGATAATACGGCCTTCAAAGCCATGCTC
GCCTCGGTTGCCGTTATATACGGTACCAATTTTGGAGCCATCAAATACCT
GGATGAAGCCAACGTGGACGTCTCCATTGTCACGGCAATCCGTTTTGCCC
TGGCCTCGCTGGCCCTGTGCCCTTTCCTCTACAAAGCTCCTTGGCCAGTG
GTGTTGCGTGGGATTGAGGTAGGGGTGTGGGTCTCCGTAGGCTACATTGC
CCAGGCCATTGGTCTTCAAACCACGCAAGCCTCCAAGTCGGCCTTCATCT
GCTCCCTCGCCGTCGTAGTCGTCCCCATTGTCAATGCCATTATTTACAAG
AAGAAAGCCCCTCCCACCACCTGGCTGGCCTCCCTCCTCGCCGTGGCTGG
CGTCGGCCTCCTCACCCTCGAAGGGAAGGGCAACCCCCCCTGCATTGGCG
ACCTATGGTCCCTAGGACAGCCTATAGGCTTCGGAATCGCCTTTGTTCGC
ACAGAACAATGCATGCAAGCCAATAAGGGCGAGGCCCTGGCCATGACAGC
TTCGCAGATGGCGGCAGTCTTGGCATGCTCCATCCTCTGGGTCTCCTTCA
CCCTCACGTCCAACACACCCGACCTAAGCGTCCTGTACGAGCCAGTAAAT
CTCGCGGCCTTGTTCTACACGGGTGTCATCACCAGTGGCATCGCCGTCGT
GGCGGAGAGCGTCGCCCTGGCCCATATCTCCGCCGAGGAGACTACCGTGA
TCCTGTCGACGGAGCCGCTGTGGGCTGCCCTGTTCGGGTCAGTGATATTG
GGGGAGACAATGAGTGGATTTGGCTATTTGGGAGGGGCTGTGATATTGCT
CGGGTGCTTGGTGACTCAGTTGAAGCTGCCGAAGACTTTAGAGAAGCTGC
TAAAGCCGTGGGGGGAAGGAGTGGAGGAGGCAGGGGAGGATTGAGGTATG
TAATGCAGAACGAGGAGGAGGAGTGGTGGTGGTAGTAGTAGCAGCAGTCA
CAACGGCAGCGGCTGGAGCGGCAGATGGATGGAAATAAATGTCAGTGTTC
ACAAAAAGGAAAGGGAATATAAGACAAAGGGAAAAGTAAGAGAGGTACAG
AGATACTATAAGTCAAAGATAAATACGCAGAGATTAACCGACTGAAGATT
AGAGCGGGAAAAGAGCGAGGCATTACGAG
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protein sequence of NO04G05060.1

>NO04G05060.1-protein ID=NO04G05060.1-protein|Name=NO04G05060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=300bp
MLASVAVIYGTNFGAIKYLDEANVDVSIVTAIRFALASLALCPFLYKAPW
PVVLRGIEVGVWVSVGYIAQAIGLQTTQASKSAFICSLAVVVVPIVNAII
YKKKAPPTTWLASLLAVAGVGLLTLEGKGNPPCIGDLWSLGQPIGFGIAF
VRTEQCMQANKGEALAMTASQMAAVLACSILWVSFTLTSNTPDLSVLYEP
VNLAALFYTGVITSGIAVVAESVALAHISAEETTVILSTEPLWAALFGSV
ILGETMSGFGYLGGAVILLGCLVTQLKLPKTLEKLLKPWGEGVEEAGED*
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Synonyms
Publications