NO04G04890, NO04G04890 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO04G04890
Unique Name	NO04G04890
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1257
Alignment location	chr4:1349550..1350806 -

Link to JBrowse

Properties


Property Name	Value
Description	Unknown protein

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr4	genome	chr4:1349550..1350806 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
PRJNA769958	2024-08-13
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR015947	PUA-like_domain
IPR002740	EVE_domain

Homology

[Close]

BLAST of NO04G04890 vs. NCBI_GenBank
Match: EWM28874.1 (PUA-like domain protein [Nannochloropsis gaditana])

HSP 1 Score: 258.8 bits (660), Expect = 1.900e-65
Identity = 127/178 (71.35%), Postives = 146/178 (82.02%), Query Frame = 0

Query:   96 RYFLMKSEPHEFSVDDLASQSAQTHCWEGVRNYQARNVMRDQMREGDKAFFYHSSCKVPGIVGLVEITKKAYPDYFQWDKKSKYFDEKSTKEAPRWWMVDVTLREKLEEIVPLEGLREEGLKKGSPLAAMALLQKGSRLSVQPVREEEWRFICERMIKKQGGQEVKNGGERVKREKGK 274
            RYFLMKSEP EFSVDDLA+Q  QT CWEGVRNYQARN+MRD M  GD+AFFYHSSCKVPGIVG++E+++ AYPD+FQWDK SKY+D  S +EAPRWWMVDVTL+E+LEE VPLE LREE LK G PLA MALLQKGSRLSVQPVREEEW+FI E++I    G  V      V+ E+G+
Sbjct:   80 RYFLMKSEPDEFSVDDLAAQPNQTGCWEGVRNYQARNLMRDHMHVGDQAFFYHSSCKVPGIVGIMEVSRAAYPDHFQWDKGSKYYDAGSDREAPRWWMVDVTLQERLEEKVPLEVLREEALKPGCPLAGMALLQKGSRLSVQPVREEEWKFIHEKLIMAPKGTGV------VREERGE 251

[Close]

BLAST of NO04G04890 vs. NCBI_GenBank
Match: WP_047815850.1 (EVE domain-containing protein [Rhodopirellula islandica])

HSP 1 Score: 193.0 bits (489), Expect = 1.300e-45
Identity = 88/159 (55.35%), Postives = 120/159 (75.47%), Query Frame = 0

Query:   95 LRYFLMKSEPHEFSVDDLASQSAQTHCWEGVRNYQARNVMRDQMREGDKAFFYHSSCKVPGIVGLVEITKKAYPDYFQWDKKSKYFDEKSTKEAPRWWMVDVTLREKLEEIVPLEGLREEGLKKGSPLAAMALLQKGSRLSVQPVREEEWRFICERMIK 254
            ++Y+LMK+EP+ F++DDLA Q  Q  CWEGVRNYQARN++RD++ EGD+  FYHS+CK P +VGL  +++  YPD+  WDKKS YFD KST ++P W+MVD+ L +KL+  V L  LREE  + GSPL  M LL+KGSRLSVQPV ++++    +R+IK
Sbjct:    1 MKYWLMKTEPNTFNIDDLAEQPDQITCWEGVRNYQARNLLRDEIEEGDRVLFYHSACKTPAVVGLATVSRGGYPDHHAWDKKSHYFDPKSTPDSPTWFMVDIQLEKKLDRPVTLAELREEATQAGSPLVDMMLLRKGSRLSVQPVTKKQF----DRVIK 155

[Close]

BLAST of NO04G04890 vs. NCBI_GenBank
Match: KXZ43333.1 (hypothetical protein GPECTOR_94g655 [Gonium pectorale])

HSP 1 Score: 193.0 bits (489), Expect = 1.300e-45
Identity = 93/161 (57.76%), Postives = 120/161 (74.53%), Query Frame = 0

Query:   96 RYFLMKSEPHEFSVDDLASQSAQTHCWEGVRNYQARNVMRDQMREGDKAFFYHSSCKVPGIVGLVEITKKAYPDYFQWDKKSKYFDEKSTKEAPRWWMVDVTLREKLEEIVPLEGLREEGLKKGSPLAAMALLQKGSRLSVQPVREEEWRFICERMIKKQG 257
            RYFLMKSEP EFS+DDL+++   T CWEGVRN QARN+MR  M+ GD+AFFYHSSCKVP +VGLVE+ ++AYPD+  +DK SKY+D +ST +AP+WWMVDV L  +    V L  LR EG + GSP+A+M L+ K SRLSVQPV  E+W  + +   ++ G
Sbjct:  121 RYFLMKSEPEEFSLDDLSAKPNSTSCWEGVRNAQARNIMR-SMKLGDQAFFYHSSCKVPAVVGLVEVVREAYPDHTAFDKSSKYYDPRSTPDAPKWWMVDVRLVRRAVRPVTLAELRAEGARAGSPVASMVLINK-SRLSVQPVTPEQWERVLQLEAEQAG 279

[Close]

BLAST of NO04G04890 vs. NCBI_GenBank
Match: WP_099263525.1 (EVE domain-containing protein [Rhodopirellula bahusiensis] >PHQ32409.1 EVE domain-containing protein [Rhodopirellula bahusiensis])

HSP 1 Score: 190.7 bits (483), Expect = 6.300e-45
Identity = 88/159 (55.35%), Postives = 116/159 (72.96%), Query Frame = 0

Query:   95 LRYFLMKSEPHEFSVDDLASQSAQTHCWEGVRNYQARNVMRDQMREGDKAFFYHSSCKVPGIVGLVEITKKAYPDYFQWDKKSKYFDEKSTKEAPRWWMVDVTLREKLEEIVPLEGLREEGLKKGSPLAAMALLQKGSRLSVQPVREEEWRFICERMIK 254
            ++Y+LMK+EP  FS+DDL  Q  Q  CWEGVRNYQARN++RD + EGD+  FYHS+CK P +VGL  +++  YPD+  WDKKS YFD KS  ++P W+MVD+ L +KL+  V L  LREE  K  SPLA M LLQKGSRLSVQPV ++++    +R++K
Sbjct:    1 MKYWLMKTEPTTFSIDDLVEQPDQITCWEGVRNYQARNLLRDDIEEGDRVLFYHSACKTPAVVGLATVSRGGYPDHHAWDKKSNYFDPKSNPDSPTWFMVDIKLEKKLDRPVTLAELREEATKARSPLADMVLLQKGSRLSVQPVTKKQF----DRVVK 155

[Close]

BLAST of NO04G04890 vs. NCBI_GenBank
Match: WP_007328178.1 (EVE domain-containing protein [Rhodopirellula baltica] >EGF25795.1 protein belonging to uncharacterized protein family UPF0310 [Rhodopirellula baltica WH47] >ELP32254.1 protein belonging to uncharacterized protein family UPF0310 [Rhodopirellula baltica SWK14])

HSP 1 Score: 189.9 bits (481), Expect = 1.100e-44
Identity = 88/159 (55.35%), Postives = 118/159 (74.21%), Query Frame = 0

Query:   95 LRYFLMKSEPHEFSVDDLASQSAQTHCWEGVRNYQARNVMRDQMREGDKAFFYHSSCKVPGIVGLVEITKKAYPDYFQWDKKSKYFDEKSTKEAPRWWMVDVTLREKLEEIVPLEGLREEGLKKGSPLAAMALLQKGSRLSVQPVREEEWRFICERMIK 254
            ++Y+LMK+EP+ FS+DDLA Q  Q  CWEGVRNYQARN++RD++ EGD+  FYHS+CK P +VGL  +++  YPD+  +DKKS YFD KS  ++P W+MVD+ L +KLE  V L  LREE  K  SPL  M LLQKGSRLSVQPV ++++    +R++K
Sbjct:    1 MKYWLMKTEPNTFSIDDLAEQPEQITCWEGVRNYQARNLLRDEIEEGDQVLFYHSACKTPAVVGLATVSRGGYPDHHAFDKKSHYFDPKSNPDSPTWYMVDIKLNKKLERPVTLAELREEATKARSPLVDMVLLQKGSRLSVQPVTKKQF----DRVVK 155

[Close]

BLAST of NO04G04890 vs. NCBI_GenBank
Match: WP_007332253.1 (EVE domain-containing protein [Rhodopirellula baltica] >NP_868474.1 hypothetical protein RB8644 [Rhodopirellula baltica SH 1] >CAD75838.1 conserved hypothetical protein [Rhodopirellula baltica SH 1] >EKK02180.1 protein belonging to uncharacterized protein family UPF0310 [Rhodopirellula baltica SH28])

HSP 1 Score: 189.9 bits (481), Expect = 1.100e-44
Identity = 88/159 (55.35%), Postives = 118/159 (74.21%), Query Frame = 0

Query:   95 LRYFLMKSEPHEFSVDDLASQSAQTHCWEGVRNYQARNVMRDQMREGDKAFFYHSSCKVPGIVGLVEITKKAYPDYFQWDKKSKYFDEKSTKEAPRWWMVDVTLREKLEEIVPLEGLREEGLKKGSPLAAMALLQKGSRLSVQPVREEEWRFICERMIK 254
            ++Y+LMK+EP+ FS+DDLA Q  Q  CWEGVRNYQARN++RD++ EGD+  FYHS+CK P +VGL  +++  YPD+  +DKKS YFD KS  ++P W+MVD+ L +KLE  V L  LREE  K  SPL  M LLQKGSRLSVQPV ++++    +R++K
Sbjct:    1 MKYWLMKTEPNTFSIDDLAEQPEQITCWEGVRNYQARNLLRDEIEEGDQVLFYHSACKTPAVVGLATVSRGGYPDHHAFDKKSHYFDPKSNPDSPTWYMVDIKLNKKLERPVTLAELREEATKARSPLVDMVLLQKGSRLSVQPVSKKQF----DRVVK 155

[Close]

BLAST of NO04G04890 vs. NCBI_GenBank
Match: XP_001702358.1 (predicted protein [Chlamydomonas reinhardtii] >PNW75076.1 hypothetical protein CHLRE_12g497650v5 [Chlamydomonas reinhardtii])

HSP 1 Score: 188.0 bits (476), Expect = 4.100e-44
Identity = 91/154 (59.09%), Postives = 115/154 (74.68%), Query Frame = 0

Query:   96 RYFLMKSEPHEFSVDDLASQSAQTHCWEGVRNYQARNVMRDQMREGDKAFFYHSSCKVPGIVGLVEITKKAYPDYFQWDKKSKYFDEKSTKEAPRWWMVDVTLREKLEEIVPLEGLREEGLKKGSPLAAMALLQKGSRLSVQPVREEEWRFICE 250
            +Y+LMKSEP EFS+DDL ++      WEGVRN QARN+MR  MR GD+A FYHSSCKVP  VG+V + ++AYPD+F +DKKSKY+DE+ST + P+WWMVDV L  +L   V L  LR EG K GSP+A+M L+ K SRLSVQPV EE+W  + +
Sbjct:  129 KYYLMKSEPEEFSLDDLEAKPESIGHWEGVRNAQARNIMRG-MRLGDEALFYHSSCKVPAAVGVVRVVREAYPDHFAFDKKSKYYDERSTPDNPKWWMVDVQLVRRLARPVTLAELRAEGAKAGSPVASMVLINK-SRLSVQPVTEEQWNVVMQ 280

[Close]

BLAST of NO04G04890 vs. NCBI_GenBank
Match: PIE01890.1 (EVE domain-containing protein [Acidobacteria bacterium])

HSP 1 Score: 187.2 bits (474), Expect = 7.000e-44
Identity = 83/155 (53.55%), Postives = 115/155 (74.19%), Query Frame = 0

Query:   95 LRYFLMKSEPHEFSVDDLASQSAQTHCWEGVRNYQARNVMRDQMREGDKAFFYHSSCKVPGIVGLVEITKKAYPDYFQWDKKSKYFDEKSTKEAPRWWMVDVTLREKLEEIVPLEGLREEGLKKGSPLAAMALLQKGSRLSVQPVREEEWRFICE 250
            ++Y+LMK+EP  +S+DDLASQ  QT  W+GVRNYQARN+MRDQM+ GD+  FYHS+CKVPG+VGL E+ ++ YPD+  WD  SKY+D KS+++ PRW+MVD+  + K   +V L+ +R         LA M LLQ+G RLS+QPV ++E++ ICE
Sbjct:    1 MKYWLMKTEPETYSIDDLASQDNQTDYWDGVRNYQARNIMRDQMKVGDQVLFYHSNCKVPGVVGLAEVAREGYPDFTSWDPASKYYDAKSSEDNPRWFMVDIKWKAKFNRVVSLKEMRAI-----PALAEMKLLQRGQRLSIQPVSKDEYQLICE 150

[Close]

BLAST of NO04G04890 vs. NCBI_GenBank
Match: WP_008658981.1 (EVE domain-containing protein [Rhodopirellula europaea] >EMB15366.1 protein belonging to Uncharacterized protein family UPF0310 [Rhodopirellula europaea 6C])

HSP 1 Score: 186.8 bits (473), Expect = 9.100e-44
Identity = 87/159 (54.72%), Postives = 116/159 (72.96%), Query Frame = 0

Query:   95 LRYFLMKSEPHEFSVDDLASQSAQTHCWEGVRNYQARNVMRDQMREGDKAFFYHSSCKVPGIVGLVEITKKAYPDYFQWDKKSKYFDEKSTKEAPRWWMVDVTLREKLEEIVPLEGLREEGLKKGSPLAAMALLQKGSRLSVQPVREEEWRFICERMIK 254
            ++Y+LMK+EP  FS+DDL  Q  Q  CWEGVRNYQARN++RD++ EGD+  FYHS+CK P +VGL  +++  YPD+  +DKKS YFD KS  ++P W+MVD+ L +KLE  V L  LREE  K  SPL  M LLQKGSRLSVQPV ++++    +R++K
Sbjct:    1 MKYWLMKTEPTTFSIDDLVEQPDQITCWEGVRNYQARNLLRDEIEEGDQVLFYHSACKTPAVVGLATVSRGGYPDHHAFDKKSHYFDPKSNPDSPTWYMVDIKLNKKLERPVTLAELREEATKARSPLVDMVLLQKGSRLSVQPVTKKQF----DRVVK 155

[Close]

BLAST of NO04G04890 vs. NCBI_GenBank
Match: KLU03338.1 (RNA-binding protein [Rhodopirellula islandica])

HSP 1 Score: 186.8 bits (473), Expect = 9.100e-44
Identity = 86/154 (55.84%), Postives = 115/154 (74.68%), Query Frame = 0

Query:  100 MKSEPHEFSVDDLASQSAQTHCWEGVRNYQARNVMRDQMREGDKAFFYHSSCKVPGIVGLVEITKKAYPDYFQWDKKSKYFDEKSTKEAPRWWMVDVTLREKLEEIVPLEGLREEGLKKGSPLAAMALLQKGSRLSVQPVREEEWRFICERMIK 254
            MK+EP+ F++DDLA Q  Q  CWEGVRNYQARN++RD++ EGD+  FYHS+CK P +VGL  +++  YPD+  WDKKS YFD KST ++P W+MVD+ L +KL+  V L  LREE  + GSPL  M LL+KGSRLSVQPV ++++    +R+IK
Sbjct:    1 MKTEPNTFNIDDLAEQPDQITCWEGVRNYQARNLLRDEIEEGDRVLFYHSACKTPAVVGLATVSRGGYPDHHAWDKKSHYFDPKSTPDSPTWFMVDIQLEKKLDRPVTLAELREEATQAGSPLVDMMLLRKGSRLSVQPVTKKQF----DRVIK 150

The following BLAST results are available for this feature:

BLAST of NO04G04890 vs. NCBI_GenBank

BLAST of NO04G04890 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM28874.1	1.900e-65	71.35	PUA-like domain protein [Nannochloropsis gaditana]	[more]
WP_047815850.1	1.300e-45	55.35	EVE domain-containing protein [Rhodopirellula isla...	[more]
KXZ43333.1	1.300e-45	57.76	hypothetical protein GPECTOR_94g655 [Gonium pector...	[more]
WP_099263525.1	6.300e-45	55.35	EVE domain-containing protein [Rhodopirellula bahu...	[more]
WP_007328178.1	1.100e-44	55.35	EVE domain-containing protein [Rhodopirellula balt...	[more]
WP_007332253.1	1.100e-44	55.35	EVE domain-containing protein [Rhodopirellula balt...	[more]
XP_001702358.1	4.100e-44	59.09	predicted protein [Chlamydomonas reinhardtii] >PNW...	[more]
PIE01890.1	7.000e-44	53.55	EVE domain-containing protein [Acidobacteria bacte...	[more]
WP_008658981.1	9.100e-44	54.72	EVE domain-containing protein [Rhodopirellula euro...	[more]
KLU03338.1	9.100e-44	55.84	RNA-binding protein [Rhodopirellula islandica]	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL080	nonsL080	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR058	ncniR058	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR110	ngnoR110	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK009281	NSK009281	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO04G04890.1	NO04G04890.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|298979	gene_2279	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100095g2	gene1724	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO04G04890.1	NO04G04890.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO04G04890 ID=NO04G04890|Name=NO04G04890|organism=Nannochloropsis oceanica|type=gene|length=1257bp
CCTCTTTCGGACGACGACTACGCCCTCACACCTAGGTTGATTTACGACGC
CCTGTACACCCGCCCACACAGGCAGAGTCACAGTCACACACAAGGTATCT
TGTGAACGGCAAAAATATCAGAATTCCCGGCTTCTCCTGCTCCGGGTCTC
CTTCATCATTTGATTACCATAAGCTGCCTTCATTCTCCTCCTCTACGTCC
GCCTCATCGCCCCACGTCCGCGCTACAACTCCTCGTCCTTCTTCTTGTTA
TCCTGGTTGTCGACCTAGTATCAAATATTCTTGGCTCTCCATCTTTGGTT
GTCACCGCGCGTGCTACTCGGATCACCGTCAGCTGGAGCAGCATCAGTAG
GAGTAGCACTTTCGCAGCATTTCTCACTACCAAGCCCCTCGTCTTTTTCC
CTCCCTTGACAAACTTCCTCATGCCTCCCAAGCGTAAGGTAAGCGTTCGC
GGGGTCATTACTCCGGGCGCTGGCACAAAAAATACCAATGCCAGTGCTGC
GTCCTCATCCCCCTCGCCCTCCTCGACCAACAAGAAAGCCAAAGCACCGG
CATCTGCCAAATCTTCATCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCCCCTCCTCCTCCTCCTCCTCTTCCTCCTCCTCCTCCTCTG
GACTCCGCTACTTTCTAATGAAATCCGAGCCCCACGAATTCAGTGTCGAT
GACCTTGCATCCCAATCCGCGCAGACCCATTGCTGGGAAGGCGTGCGGAA
TTACCAAGCCCGCAACGTCATGAGGGATCAAATGCGCGAGGGAGACAAGG
CTTTCTTTTATCATTCTTCGTGTAAGGTGCCGGGGATTGTCGGTCTGGTG
GAGATCACCAAAAAGGCATATCCGGATTATTTTCAGTGGGATAAGAAAAG
TAAGTACTTTGATGAGAAGAGCACGAAAGAGGCTCCGCGCTGGTGGATGG
TCGATGTGACACTCCGGGAGAAGTTAGAGGAGATCGTCCCATTGGAGGGC
TTGAGGGAAGAAGGGCTGAAAAAGGGGAGTCCGTTGGCGGCGATGGCGCT
GCTTCAGAAGGGCTCCAGGCTGAGTGTGCAACCGGTAAGAGAGGAGGAGT
GGCGATTTATTTGCGAGAGGATGATTAAGAAGCAAGGGGGCCAAGAGGTA
AAGAATGGGGGAGAAAGAGTAAAGAGGGAGAAGGGGAAAGGAGCAGAAGA
TAAGTAG

protein sequence of NO04G04890.1

>NO04G04890.1-protein ID=NO04G04890.1-protein|Name=NO04G04890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=279bp
MPPKRKVSVRGVITPGAGTKNTNASAASSSPSPSSTNKKAKAPASAKSSS
SSSSSSSSSSSSSSSSSSSFSSSSSSSSSSPSSSSSSSSSSSSGLRYFLM
KSEPHEFSVDDLASQSAQTHCWEGVRNYQARNVMRDQMREGDKAFFYHSS
CKVPGIVGLVEITKKAYPDYFQWDKKSKYFDEKSTKEAPRWWMVDVTLRE
KLEEIVPLEGLREEGLKKGSPLAAMALLQKGSRLSVQPVREEEWRFICER
MIKKQGGQEVKNGGERVKREKGKGAEDK*

Synonyms

Publications