NO04G04850, NO04G04850 (gene) Nannochloropsis oceanica

Overview
NameNO04G04850
Unique NameNO04G04850
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1792
Alignment locationchr4:1323691..1325482 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1323691..1325482 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO04G04850 vs. NCBI_GenBank
Match: EWM28871.1 (hypothetical protein Naga_100095g7 [Nannochloropsis gaditana])

HSP 1 Score: 120.2 bits (300), Expect = 9.700e-24
Identity = 60/106 (56.60%), Postives = 74/106 (69.81%), Query Frame = 0 
Query:  134 DEARMETGMWGVEETETIANLRRQGLPIYFPSGKFKGVGLRALKRTVEGRAYISEYLAKKPGWFQRCNVPENMALLESLSRLRMLRRVTDLQGKVVPASRMLRDWK 240
            DE  M       +E  T   LR++GLPIY   G FKGV L AL R   GR Y+ ++LA+KPGWF+R +VP NMALL SLSRLR+LR VTDL G VVPA+RM+R+W+
Sbjct:  126 DEEWMLADTSKFDEKATSIQLRKEGLPIYVTFGAFKGVSLPALGRMEGGRQYLDQFLARKPGWFERGSVPANMALLRSLSRLRLLRYVTDLNGNVVPATRMVRNWE 231
The following BLAST results are available for this feature:
BLAST of NO04G04850 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28871.19.700e-2456.60hypothetical protein Naga_100095g7 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009288NSK009288Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G04850.1NO04G04850.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100095g7gene1728Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G04850.1NO04G04850.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G04850 ID=NO04G04850|Name=NO04G04850|organism=Nannochloropsis oceanica|type=gene|length=1792bp
CGATTTTGAAGAAGCATGGCCCGCGCAGCACCGCGGGGACGGCAAATCCT
ATAGCTCCTCATTTTTTGTCAAGAAGCCGGGCCTGTTCAACTACTCACAT
CACACCCACAATACGAAGCACAATTATCGATTCCAGGAGCTCTGCTAAAG
CTGCACTCACTGCTACCATGGCGGCCTCCGCCAGCGACAAACACTCTTCT
TCTTTTTCAGGAGGCGGAGCCATGTCTTCAACCCCGTCCCTCTCTTATGT
AATCTCCCGTGGCAGCGGTCTGACCACACGTGCACATGAGAGTGACGAGG
AAGAAGATAAGAATGAGCAGGGCCTGTTTTGTATTTCTCACTCGCGTCGG
TGGTGGTGGCGGGGTATGCCGTCCCCTCGTCGTCTTCTGGAGGAGGAGGA
GGATTCGGGAGAGGAGGAGGATGAGGAAGAGGAAGAGGAGGAAGAGGAGG
AAGAGGAGGAAGCCGAGACGGAGCCAGAGGAGCAGGGGCAGGAGAAGATC
GAGGAGCAAAACGAAATAGACCAGCACGGTGGCAGTAGTGACGAGGACAG
CTGTGCCACTGAGCCGGATGAGGCGCGGATGGAGACTGGCATGTGGGGCG
TTGAAGAGACGGAAACGATCGCGAATTTGCGTCGGCAGGGTCTTCCTATA
TACTTCCCATCGGGTAAATTTAAAGGAGTCGGCTTGCGCGCACTTAAACG
TACTGTCGAAGGGCGAGgtgagtgcgtgtatgtgtacaatgaggaaggag
ggaggaagtgcataggtgctggatgagagggtgcaaagagtaaaaaggac
agagtcacgagggcgaaatattggattgcctcccaacttgtatcccgttt
cctgtctcagaccgcatgccggcaatgctcttgtattacaccgccttaat
gcctcttcgatccgctctaactcaagcggcatttcttcctcccttctttt
cctccccttcctctccccttttctctctccttccctctttttgaacccac
cagCATATATCTCCGAATACCTCGCCAAGAAACCTGGGTGGTTCCAGCGC
TGCAATGTACCTGAGAATATGGCGCTTCTCGAGTCCCTCTCCCGCCTGCG
CATGCTCCGCCGCGTGACGGACCTTCAGGGTAAGGTCGTCCCCGCCAGCC
GAATGCTTCGAGATTGGAAGAAACAAGTGACCCCGAAGGCATTCATTTTC
AAGCGGCAGCGACGGACGGCGTCATGATCGCGCGGCCGCCTTAGCGTCGT
CAGCGGTGAAGGGAGTGAGGAAGACAATATCTGGTAATGGTGGTTGTGGG
ATATAATTAGACGGAGGGGGAGGGCCAGCGTCGCCTTGGCCTGGAAAGGA
GATACACACACATTAAACATATGCTCTCCAGACGGCTTTGTATACATCTA
TTATGTATTTACATGTATATATATCTGTATATACAATACATGTACATGTG
TTATATGCAATCAATCTGTTTAAACGGCGTGATTTTTTATATGGAGGAGG
ATAAGGACGGGGGTGTAGTGATCGTTGATGTAGGCTCTTTGGACGTAGAT
ATAAAACCTTCGAATGGACTCATGGCTCTGCGGCGTTGTCTTCTCCTTCG
GGTTTTCTTTGCATGAAGGGAGAATAAGATATCCTGTAGGCTCACCCTCC
TGCCCTGTTCATTCCTTGCCTCGGTCCTCGGTTCTCTTGCTTCTTCTACT
TGTTCATTCCGTGAAAAAAGTCTTCTGGCGCGACATTACCAGAGCCGATG
GCCAGCAATAAATTTGGAAGTTAAATTAATATGGCATCATGA
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protein sequence of NO04G04850.1

>NO04G04850.1-protein ID=NO04G04850.1-protein|Name=NO04G04850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=258bp
MAASASDKHSSSFSGGGAMSSTPSLSYVISRGSGLTTRAHESDEEEDKNE
QGLFCISHSRRWWWRGMPSPRRLLEEEEDSGEEEDEEEEEEEEEEEEEAE
TEPEEQGQEKIEEQNEIDQHGGSSDEDSCATEPDEARMETGMWGVEETET
IANLRRQGLPIYFPSGKFKGVGLRALKRTVEGRAYISEYLAKKPGWFQRC
NVPENMALLESLSRLRMLRRVTDLQGKVVPASRMLRDWKKQVTPKAFIFK
RQRRTAS*
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Synonyms
Publications