NO04G04840.1, NO04G04840.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G04840.1
Unique NameNO04G04840.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length855
Alignment locationchr4:1322677..1323531 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1322677..1323531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G04840.1 vs.
Match: EWM28875.1 (hypothetical protein Naga_100095g8 [Nannochloropsis gaditana])

HSP 1 Score: 84.0 bits (206), Expect = 8.500e-13
Identity = 78/198 (39.39%), Postives = 98/198 (49.49%), Query Frame = 0 
Query:   12 SLPPAQPRPPSLAPVPSPTLPIPILRTSVSYTAGVPLHRQLTAVTAAQQRKEVDAGIR--SGGEWRVPLTDTERRKVRQNILAAFKHQTTSYEEVLELAVALQEEALHAWAPSRLDYIKNAVQFDRRLVEAKKNTGERAALTTSAAAAKMGSGMGKNEEEGRGKGKRSRSGKIKTATASIKKQEKG---DEGEAMKRK 205
            S P   P  P  A   SP L +P LR SVS T G+ L R L   + + Q    DA     S   W+  LT+ ER  VR  I+AA+K Q  +YE+VL +A ALQEE     APSRLDYIK+ VQF  RL EAKK         + A              +  G  KR RS  ++  T S K+ ++G    EGE  K+K
Sbjct:   84 SEPSTFPDGPGRA---SPGLALPRLRMSVSDTPGI-LCRPLLLPSISNQLNMEDASKNTLSNKTWQTSLTEEEREVVRLKIMAAYKRQAKTYEDVLNVAAALQEEECFGRAPSRLDYIKDTVQFSHRLGEAKKKLVSGRGKGSGAEKQAEVKEKEPTHSDTGGTRKRGRSEAVEINTVSDKQIKEGHGAGEGENSKKK 277
The following BLAST results are available for this feature:
BLAST of NO04G04840.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28875.18.500e-1339.39hypothetical protein Naga_100095g8 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G04840NO04G04840Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G04840.1NO04G04840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G04840.1.cds1NO04G04840.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G04840.1 ID=NO04G04840.1|Name=NO04G04840.1|organism=Nannochloropsis oceanica|type=mRNA|length=855bp
ATGGCTCCCGCCACCTTGCCCACCGATCAAGAATCTCTCCCGCCAGCGCA
GCCACGGCCACCGTCTCTTGCCCCCGTGCCCTCGCCCACTCTTCCCATCC
CCATCCTCCGGACCTCCGTCTCCTATACAGCCGGCGTACCCCTCCACCGT
CAACTCACTGCCGTTACCGCCGCCCAACAACGCAAAGAAGTCGATGCAGG
AATAAGGTCTGGCGGGGAATGGCGGGTGCCTCTCACGGATACCGAACGGA
GGAAGGTCCGCCAAAATATACTGGCAGCATTCAAACACCAGACCACAAGC
TATGAGGAAGTGTTAGAATTAGCGGTGGCCCTGCAAGAAGAAGCTCTACA
TGCCTGGGCCCCTTCTCGGTTGGACTATATCAAAAATGCTGTACAATTTG
ATCGGCGTCTGGTAGAAGCAAAGAAAAACACAGGAGAACGGGCTGCTCTA
ACGACATCAGCGGCAGCGGCAAAAATGGGTAGTGGGATGGGAAAAAATGA
AGAAGAGGGGAGAGGAAAAGGGAAAAGGAGCAGGTCAGGGAAGATAAAGA
CGGCGACGGCATCTATAAAGAAGCAGGAGAAAGGGGACGAAGGAGAAGCA
ATGAAGCGAAAAGTGGAAGTTCCGAAAGACATCAGCGTGGAAGAGGCGGA
AAAGACGGAAGCAGAGACTGGGGTAGGCAAGAATAAGTTTAGGCGGGCAT
CGCGACGAAGCATCAAGGATGCACAAGAAGAAGGAGCGGAGAAGAAAGGG
GCTAATTATTTTGTGCCCACGAAAGCTGTGGAAGAAAAGACGAATGAATT
TGCAGCAGCAGCAGCAAGCACGATTGGCTCCCATCGAAAGCGGATCCGAA
AGTAG
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protein sequence of NO04G04840.1

>NO04G04840.1-protein ID=NO04G04840.1-protein|Name=NO04G04840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=285bp
MAPATLPTDQESLPPAQPRPPSLAPVPSPTLPIPILRTSVSYTAGVPLHR
QLTAVTAAQQRKEVDAGIRSGGEWRVPLTDTERRKVRQNILAAFKHQTTS
YEEVLELAVALQEEALHAWAPSRLDYIKNAVQFDRRLVEAKKNTGERAAL
TTSAAAAKMGSGMGKNEEEGRGKGKRSRSGKIKTATASIKKQEKGDEGEA
MKRKVEVPKDISVEEAEKTEAETGVGKNKFRRASRRSIKDAQEEGAEKKG
ANYFVPTKAVEEKTNEFAAAAASTIGSHRKRIRK*
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mRNA from alignment at chr4:1322677..1323531+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G04840.1 ID=NO04G04840.1|Name=NO04G04840.1|organism=Nannochloropsis oceanica|type=mRNA|length=855bp|location=Sequence derived from alignment at chr4:1322677..1323531+ (Nannochloropsis oceanica)
ATGGCTCCCGCCACCTTGCCCACCGATCAAGAATCTCTCCCGCCAGCGCA
GCCACGGCCACCGTCTCTTGCCCCCGTGCCCTCGCCCACTCTTCCCATCC
CCATCCTCCGGACCTCCGTCTCCTATACAGCCGGCGTACCCCTCCACCGT
CAACTCACTGCCGTTACCGCCGCCCAACAACGCAAAGAAGTCGATGCAGG
AATAAGGTCTGGCGGGGAATGGCGGGTGCCTCTCACGGATACCGAACGGA
GGAAGGTCCGCCAAAATATACTGGCAGCATTCAAACACCAGACCACAAGC
TATGAGGAAGTGTTAGAATTAGCGGTGGCCCTGCAAGAAGAAGCTCTACA
TGCCTGGGCCCCTTCTCGGTTGGACTATATCAAAAATGCTGTACAATTTG
ATCGGCGTCTGGTAGAAGCAAAGAAAAACACAGGAGAACGGGCTGCTCTA
ACGACATCAGCGGCAGCGGCAAAAATGGGTAGTGGGATGGGAAAAAATGA
AGAAGAGGGGAGAGGAAAAGGGAAAAGGAGCAGGTCAGGGAAGATAAAGA
CGGCGACGGCATCTATAAAGAAGCAGGAGAAAGGGGACGAAGGAGAAGCA
ATGAAGCGAAAAGTGGAAGTTCCGAAAGACATCAGCGTGGAAGAGGCGGA
AAAGACGGAAGCAGAGACTGGGGTAGGCAAGAATAAGTTTAGGCGGGCAT
CGCGACGAAGCATCAAGGATGCACAAGAAGAAGGAGCGGAGAAGAAAGGG
GCTAATTATTTTGTGCCCACGAAAGCTGTGGAAGAAAAGACGAATGAATT
TGCAGCAGCAGCAGCAAGCACGATTGGCTCCCATCGAAAGCGGATCCGAA
AGTAG
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Coding sequence (CDS) from alignment at chr4:1322677..1323531+

>NO04G04840.1 ID=NO04G04840.1|Name=NO04G04840.1|organism=Nannochloropsis oceanica|type=CDS|length=855bp|location=Sequence derived from alignment at chr4:1322677..1323531+ (Nannochloropsis oceanica)
ATGGCTCCCGCCACCTTGCCCACCGATCAAGAATCTCTCCCGCCAGCGCA
GCCACGGCCACCGTCTCTTGCCCCCGTGCCCTCGCCCACTCTTCCCATCC
CCATCCTCCGGACCTCCGTCTCCTATACAGCCGGCGTACCCCTCCACCGT
CAACTCACTGCCGTTACCGCCGCCCAACAACGCAAAGAAGTCGATGCAGG
AATAAGGTCTGGCGGGGAATGGCGGGTGCCTCTCACGGATACCGAACGGA
GGAAGGTCCGCCAAAATATACTGGCAGCATTCAAACACCAGACCACAAGC
TATGAGGAAGTGTTAGAATTAGCGGTGGCCCTGCAAGAAGAAGCTCTACA
TGCCTGGGCCCCTTCTCGGTTGGACTATATCAAAAATGCTGTACAATTTG
ATCGGCGTCTGGTAGAAGCAAAGAAAAACACAGGAGAACGGGCTGCTCTA
ACGACATCAGCGGCAGCGGCAAAAATGGGTAGTGGGATGGGAAAAAATGA
AGAAGAGGGGAGAGGAAAAGGGAAAAGGAGCAGGTCAGGGAAGATAAAGA
CGGCGACGGCATCTATAAAGAAGCAGGAGAAAGGGGACGAAGGAGAAGCA
ATGAAGCGAAAAGTGGAAGTTCCGAAAGACATCAGCGTGGAAGAGGCGGA
AAAGACGGAAGCAGAGACTGGGGTAGGCAAGAATAAGTTTAGGCGGGCAT
CGCGACGAAGCATCAAGGATGCACAAGAAGAAGGAGCGGAGAAGAAAGGG
GCTAATTATTTTGTGCCCACGAAAGCTGTGGAAGAAAAGACGAATGAATT
TGCAGCAGCAGCAGCAAGCACGATTGGCTCCCATCGAAAGCGGATCCGAA
AGTAG
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Synonyms
Publications