NO04G04840, NO04G04840 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of NO04G04840 vs. NCBI_GenBank
Match: EWM28875.1 (hypothetical protein Naga_100095g8 [Nannochloropsis gaditana]) HSP 1 Score: 85.1 bits (209), Expect = 3.800e-13 Identity = 54/109 (49.54%), Postives = 65/109 (59.63%), Query Frame = 0 Query: 36 LRTSVSYTAGVPLHRQLTAVTAAQQRKEVDA--GIRSGGEWRVPLTDTERRKVRQNILAAFKHQTTSYEEVLELAVALQEEALHAWAPSRLDYIKNAVQFDRRLVEAKK 143 LR SVS T G+ L R L + + Q DA S W+ LT+ ER VR I+AA+K Q +YE+VL +A ALQEE APSRLDYIK+ VQF RL EAKK Sbjct: 105 LRMSVSDTPGI-LCRPLLLPSISNQLNMEDASKNTLSNKTWQTSLTEEEREVVRLKIMAAYKRQAKTYEDVLNVAAALQEEECFGRAPSRLDYIKDTVQFSHRLGEAKK 212
BLAST of NO04G04840 vs. NCBI_GenBank
Match: GAX94258.1 (Hypothetical protein PINS_002128 [Pythium insidiosum]) HSP 1 Score: 68.9 bits (167), Expect = 2.800e-8 Identity = 38/80 (47.50%), Postives = 55/80 (68.75%), Query Frame = 0 Query: 73 EWRVPLTDTERRKVRQNILAAFKHQTTSYEEVLELAVALQEEALHAWAPSRLDYIKNAVQFDRRLVEAKKN--TGERAAL 151 +WR+ LT ER+ VR I A+ + TSYE++L++A A++EE LH APSRLDY K+ +F+ R V+ KK+ G+ AAL Sbjct: 151 DWRMYLTIEERQAVRSKIRDAYSSRCTSYEDLLQVACAIEEELLHISAPSRLDYFKSGFEFENR-VKLKKDQLQGQLAAL 229
BLAST of NO04G04840 vs. NCBI_GenBank
Match: XP_009524419.1 (hypothetical protein PHYSODRAFT_350785 [Phytophthora sojae] >EGZ21702.1 hypothetical protein PHYSODRAFT_350785 [Phytophthora sojae]) HSP 1 Score: 67.4 bits (163), Expect = 8.200e-8 Identity = 37/80 (46.25%), Postives = 55/80 (68.75%), Query Frame = 0 Query: 73 EWRVPLTDTERRKVRQNILAAFKHQTTSYEEVLELAVALQEEALHAWAPSRLDYIKNAVQFDRRLVEAKKN--TGERAAL 151 +WR+ LT ER+ VR I A+ + T+YE++L++A A++EE LH APSRLDY K+ +F+ R V+ KK+ G+ AAL Sbjct: 230 DWRMYLTIEERQAVRSKIRDAYTSRCTTYEDLLQVACAIEEELLHISAPSRLDYFKSGFEFENR-VKLKKDQLQGQLAAL 308
BLAST of NO04G04840 vs. NCBI_GenBank
Match: POM73857.1 (hypothetical protein PHPALM_9259 [Phytophthora palmivora var. palmivora]) HSP 1 Score: 67.4 bits (163), Expect = 8.200e-8 Identity = 37/80 (46.25%), Postives = 55/80 (68.75%), Query Frame = 0 Query: 73 EWRVPLTDTERRKVRQNILAAFKHQTTSYEEVLELAVALQEEALHAWAPSRLDYIKNAVQFDRRLVEAKKN--TGERAAL 151 +WR+ LT ER+ VR I A+ + T+YE++L++A A++EE LH APSRLDY K+ +F+ R V+ KK+ G+ AAL Sbjct: 272 DWRMYLTIEERQAVRSKIRDAYTSRCTTYEDLLQVACAIEEELLHISAPSRLDYFKSGFEFENR-VKLKKDQLQGQLAAL 350
BLAST of NO04G04840 vs. NCBI_GenBank
Match: XP_024573416.1 (hypothetical protein PHALS_04510 [Plasmopara halstedii] >CEG37047.1 hypothetical protein PHALS_04510 [Plasmopara halstedii]) HSP 1 Score: 67.0 bits (162), Expect = 1.100e-7 Identity = 37/80 (46.25%), Postives = 55/80 (68.75%), Query Frame = 0 Query: 73 EWRVPLTDTERRKVRQNILAAFKHQTTSYEEVLELAVALQEEALHAWAPSRLDYIKNAVQFDRRLVEAKKN--TGERAAL 151 +WR+ LT ER+ VR I A+ + +SYE++L++A A++EE LH APSRLDY K+ +F+ R V+ KK+ G+ AAL Sbjct: 120 DWRMYLTIEERQAVRSKIRDAYTSRCSSYEDLLQVACAIEEELLHISAPSRLDYFKSGFEFENR-VKLKKDQLQGQLAAL 198
BLAST of NO04G04840 vs. NCBI_GenBank
Match: XP_008905131.1 (hypothetical protein PPTG_11742 [Phytophthora parasitica INRA-310] >ETI47450.1 hypothetical protein F443_08367 [Phytophthora parasitica P1569] >ETK87372.1 hypothetical protein L915_08199 [Phytophthora parasitica] >ETL40789.1 hypothetical protein L916_08123 [Phytophthora parasitica] >ETL93922.1 hypothetical protein L917_08021 [Phytophthora parasitica] >ETM47186.1 hypothetical protein L914_08085 [Phytophthora parasitica] >ETN09298.1 hypothetical protein PPTG_11742 [Phytophthora parasitica INRA-310] >ETO76148.1 hypothetical protein F444_08426 [Phytophthora parasitica P1976] >ETP17232.1 hypothetical protein F441_08352 [Phytophthora parasitica CJ01A1] >ETP45272.1 hypothetical protein F442_08309 [Phytophthora parasitica P10297] >KUF80311.1 hypothetical protein AM587_10016929 [Phytophthora nicotianae]) HSP 1 Score: 65.9 bits (159), Expect = 2.400e-7 Identity = 36/80 (45.00%), Postives = 55/80 (68.75%), Query Frame = 0 Query: 73 EWRVPLTDTERRKVRQNILAAFKHQTTSYEEVLELAVALQEEALHAWAPSRLDYIKNAVQFDRRLVEAKKN--TGERAAL 151 +WR+ LT ER+ VR I A+ + ++YE++L++A A++EE LH APSRLDY K+ +F+ R V+ KK+ G+ AAL Sbjct: 128 DWRMYLTIEERQAVRSKIRDAYTSRCSTYEDLLQVACAIEEELLHISAPSRLDYFKSGFEFENR-VKLKKDQLQGQLAAL 206
BLAST of NO04G04840 vs. NCBI_GenBank
Match: XP_002902553.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY56479.1 conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 65.9 bits (159), Expect = 2.400e-7 Identity = 36/80 (45.00%), Postives = 55/80 (68.75%), Query Frame = 0 Query: 73 EWRVPLTDTERRKVRQNILAAFKHQTTSYEEVLELAVALQEEALHAWAPSRLDYIKNAVQFDRRLVEAKKN--TGERAAL 151 +WR+ LT ER+ VR I A+ + ++YE++L++A A++EE LH APSRLDY K+ +F+ R V+ KK+ G+ AAL Sbjct: 254 DWRMYLTIEERQAVRSKIRDAYTSRCSTYEDLLQVACAIEEELLHISAPSRLDYFKSGFEFENR-VKLKKDQLQGQLAAL 332
BLAST of NO04G04840 vs. NCBI_GenBank
Match: XP_012198026.1 (hypothetical protein SPRG_04046 [Saprolegnia parasitica CBS 223.65] >KDO31431.1 hypothetical protein SPRG_04046 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 65.9 bits (159), Expect = 2.400e-7 Identity = 39/105 (37.14%), Postives = 64/105 (60.95%), Query Frame = 0 Query: 47 PLHRQLTAVTAAQQRKEVDAGIRSGGEWRVPLTDTERRKVRQNILAAFKHQTTSYEEVLELAVALQEEALHAWAPSRLDYIKNAVQFDRRL-VEAKKNTGERAAL 151 P++ QL+A ++ + +G +WR+ LT ER+ VR I A+ +YEE+L+ A A++EE LH APSRLDY K+ +F+ R+ ++ ++ G+ AAL Sbjct: 112 PVNPQLSAAAPSRSQLPSSSG-PPPQDWRMYLTIEERQAVRSKIQDAYTSTCKTYEELLQAASAIEEELLHIAAPSRLDYFKSGFEFENRVKLKREQLQGQLAAL 215
BLAST of NO04G04840 vs. NCBI_GenBank
Match: CCA13889.1 (conserved hypothetical protein [Albugo laibachii Nc14]) HSP 1 Score: 65.1 bits (157), Expect = 4.100e-7 Identity = 30/64 (46.88%), Postives = 46/64 (71.88%), Query Frame = 0 Query: 74 WRVPLTDTERRKVRQNILAAFKHQTTSYEEVLELAVALQEEALHAWAPSRLDYIKNAVQFDRRL 138 WR+ LT ER+ VR I A+ ++ TSY+++L++A A++EE LH APSRLDY K+ +F+ R+ Sbjct: 147 WRMYLTIEERQAVRSKIRDAYLNKCTSYDDILQVACAIEEELLHISAPSRLDYFKSGFEFETRV 210
BLAST of NO04G04840 vs. NCBI_GenBank
Match: OQR98470.1 (hypothetical protein ACHHYP_08596 [Achlya hypogyna]) HSP 1 Score: 64.3 bits (155), Expect = 6.900e-7 Identity = 40/109 (36.70%), Postives = 61/109 (55.96%), Query Frame = 0 Query: 43 TAGVPLHRQLTAVTAAQQRKEVDAGIRSGGEWRVPLTDTERRKVRQNILAAFKHQTTSYEEVLELAVALQEEALHAWAPSRLDYIKNAVQFDRRL-VEAKKNTGERAAL 151 ++ P QL A TA + +WR+ LT ER+ VR I A+ +YEE+L+ A A++EE LH APSRLDY K+ +F+ R+ ++ ++ G+ AAL Sbjct: 113 SSSTPSRSQLPASTATPPQ-----------DWRMYLTIEERQAVRSKIQDAYTSTCKTYEELLQAASAIEEELLHIAAPSRLDYFKSGFEFENRVKLKREQLQGQLAAL 210 The following BLAST results are available for this feature:
BLAST of NO04G04840 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 10
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO04G04840 ID=NO04G04840|Name=NO04G04840|organism=Nannochloropsis oceanica|type=gene|length=855bpback to top protein sequence of NO04G04840.1 >NO04G04840.1-protein ID=NO04G04840.1-protein|Name=NO04G04840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=285bpback to top Synonyms
Publications
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