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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr4 | genome | chr4:1247415..1251571 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G04590.3 vs.
Match: EWM28831.1 (protein phosphatase 2c [Nannochloropsis gaditana]; EWM28832.1 protein phosphatase 2c [Nannochloropsis gaditana]) HSP 1 Score: 353.2 bits (905), Expect = 9.000e-94 Identity = 199/320 (62.19%), Postives = 230/320 (71.88%), Query Frame = 0
Query: 7 SFSSASTPSSGEPPPWSPLTSLVPSVLFAIVLLYGLHHLLRFLFNTLSPHPTPAFSSSRSSSIISDGQAHVHCNRDNSSDLMRALDDIDSP-SQTIPPSSLYSPS-TPPSPFPSNVHLPCSHWAETGGRQYMEDRLSFRGRLEGRNDASLYAVFDGHGGALASEFCAQELPRYVVGSEEGWEVATKAALRDAFMKTDAAFVKATEGTNRLDGTTALVALIRGTQLFVANAGDSRAILVQRGARVVPLSRDHKPSLPDELQRITEMGGKVIFWGRWRVEGILAVSRAIGDMHLKPYVTPEPEVTEWEVAEDDLFLILASDG 325
S S+++ P + P P S V +L +LY +L L ++L PA + + +S G S L A SP S T YS S T P+ VHLPCSHWAETGGRQYMEDRLSFRGRL GR DASLYA FDGHGGALASEFCAQELP Y+V SE+ WE+ATK+AL+DAF +TDAAF +A GT+RLDGTTALV+++ G +LFVANAGDSRAILVQRGARVVPLSRDHKPSLPDEL+RIT +GGKVIFWGRWRVEG+LAVSRAIGD HLKPYVTPEPEVTEWE+ E D FL++ASDG
Sbjct: 9 SLSASTIPDA----PSLPFGSHVLGLLLCFAILYVALRILFTLVHSLFLRSNPAMPGAPTVPRLSGGW--------RSWYLAGACGAKASPLSSTAGHPVPYSSSPTDVERQPNQVHLPCSHWAETGGRQYMEDRLSFRGRLGGREDASLYACFDGHGGALASEFCAQELPGYLVESEKNWEMATKSALKDAFAQTDAAFAQALAGTDRLDGTTALVSVVVGDKLFVANAGDSRAILVQRGARVVPLSRDHKPSLPDELERITGLGGKVIFWGRWRVEGVLAVSRAIGDAHLKPYVTPEPEVTEWEITEKDHFLVVASDG 316
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G04590.3 ID=NO04G04590.3|Name=NO04G04590.3|organism=Nannochloropsis oceanica|type=mRNA|length=3798bp TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTG TTGTTGTTGTTGTTATTGTTGAGGAAACCGCGAGAAGCGGCGGCTAGCAG CCCCACGAATGGTCGCTAGTCACCTGCGCTTCTTGCCTGATGCCGGAAAA AAATGTGCTGTCCCTCCTCGTTTCTGCCCCTCTCTCTCCACCTCCACCTC CATCTTTATCCTGTAGAAGACGTAGCCCCTCTCCTACTTTGTAACCTTCT TCCCCTACTTTCCTCTCTCCGTCATCACCTTCCAAATCATCTCTCAAGTG CTCCCGTGCCCCATAGGTCCATCCTCGTCTCTCCTTACTCCCTCCCTCCC TCCTTACTTCTCTCCTTGCTTCCCCTTCTTTTTCATGTCCTTTTCGGCGT CCTCCTCCGCAAGGCTCACAGCCGCCGAGGCGAGCTGCGCCACGTTCACC ACCTGCTTAATGCCGGCCAAGACCATCGTGATCCACCACAAACTCTCCAA AATATCGATCGGAAAGTGCACCTTCATCTCCGGGTGCAACCATTCCGGTG CGGCCACACGCCCGAATGTCACACCCTTCTCCTTAATAAAATTCAAGAGG TAAAAGAACTCCTGCCCGGTGCAACAGGCAAAAAACAAGGGTTTACACGC ATAATACCACTGCAAAATGAAATTCTTCCCCGCCGTAGCCTCCGCTGACT TGTGGTGCCGACCTGCCGCTGCGATGCAATGAAACCAATGGCTCGAAATG TCAAGCATGCACAGACTGATCCACCCGAATTTTTTCCAGTCCTCGATCTC TACCAACAAATTAATCATCACCAACCCCGCAGTCGCTGTCCTATCCGTTA CCATGTCCAGAACTCCTCCAAATCCACTCTCCTGTCCCACCATTCGTGCC ACGTGCCCGTCGACGGCATCCAAGGCAAAAGCCAAGAAATACAACCCAAC CACGTTTTCCCACTTTGCCTTACGTTGCACACCCAAGTAAAGGGAGTAAA GCGTGGCAATCACACGCAGGTACCCGATCAGATTGGGGAGGTAGAAGAAG ATGGACCACTTGCTTGTCGCACGGCTGCTCGTGATATTGCTTGGTTTGTT GCTCTTTTTGCTGCTGGCAATGCTGCTGGGGCTCGTGATGGTTGTGCTGG GAGTCTTCCTCACAGCGGCGGAGGAGCCAGAAATGGTCGCACGCCGGCTA CTTGCGCGGGGCTTGATAGTAGTAGTGGCAACGTCGGTGCTGTCGTCGTT GATGGTGCTCTTGACCGTGCGCCCACCGCGGGTGCGGTAGGGGCTAGTTC TAGGCATCGCGCGCTGTGGAATTGGAGAGGGAGAGGGGAAAAGGGAAGGG GATTGGAGATCAGGCGTGCGCCTGGTGCTGTCGGTGCGATACATTCAGCA TATGTTGGCGAAAATGGTGATGCACGGCGTTGTGTCGATCTAATTGTGGT GAGGGTGCGAGCGCTTGGAAGCTGGAGGCCCATCTCAGATATGATGATGC CTCAGTGAGGCAGGCGCTTGCAGGTCGTCGGTCTCGAGTCCTAAAACACG AAAAGGGCCGCGCTGACAACAGCATCTCCTGAAAAAAGAGAAGGGACGTG CATGGGGAGGGTGTTGCTGATTTTGTTGGCAGCTTGTGGCGTGAGAACGA GATTCACGTAGGCAACGACCTTAGCACAACAGTTTTCGCGCGACATGCAA GGAAGGATTAAGGTCAACTGCAGGTCAAGGCAATTTTGCTTTCCCACTTT CTTAGGTCGAGATGACCAAACTGCAGTAGACTCAATCTTTTCCCCAGTCA TGGTATGCAGATGCCTTTTTATGCTTGCTTCCAATTTGCACTTGAGCCAC CGGTGAAGAAAATTCTCTTCCAAATTAGAGTACTTTGAATTTGCGCTGCA TGCCCTCATACCCCGCCCCACCTCTACAACACAGGTGCAGCATCAGCCAT GTGCGAGAGAGAAGCCTGCAGAAGCACCCCCACTGCCTGAGCTTTGACTT TATCAAGAAGCGGTCGCTATTGAGGCCCCGACAATGGCGCCCAGCACTTT TTCCTTCTCCTCCGCCTCTACCCCATCCTCTGGCGAACCCCCGCCCTGGT CGCCCTTAACCTCCCTTGTCCCTTCCGTCTTATTTGCCATCGTCCTCCTT TACGGCCTCCATCATCTGCTCCGTTTTCTCTTCAATACCTTGTCCCCGCA TCCCACCCCTGCCTTTAGCAGCAGCCGCAGCAGCAGCATCATAAGTGATG GCCAAGCACACGTTCACTGCAATCGCGATAACTCTTCCGACCTCATGCGC GCCCTCGACGACATCGACTCCCCCTCCCAGACCATTCCTCCCTCCTCCTT ATACTCTCCCTCTACGCCCCCAAGCCCCTTCCCGTCCAACGTCCATTTGC CTTGCTCCCACTGGGCAGAAACTGGGGGCAGGCAGTACATGGAAGATCGC CTCTCGTTTCGAGGGAGACTGGAAGGGAGGAATGACGCGTCTTTGTACGC TGTTTTTGACGGGCACGGTGGTGCCTTGGCGAGTGAGTTTTGTGCGCAGG AGCTGCCACGATATGTGGTGGGGAGTGAGGAGGGGTGGGAGGTGGCGACG AAAGCGGCCTTAAGAGACGCCTTCATGAAGACAGATGCAGCGTTTGTCAA GGCGACTGAGGGGACGAATCGATTGGATGGGACGACGGCCTTGGTGGCTT TGATAAGGGGAACTCAATTGTTCGTGGCCAACGCCGGGGACAGCAGGGCT ATTTTGGTGCAGAGAGGAGCGAGGGTCGTGCCTCTGAGTCGTGACCACAA GCCGAGTCTACCGGACGAATTGCAGAGGATAACGGAAATGGGTGGCAAAG TCATATTTTGGGGTCGGTGGAGGGTGGAGGGGATTCTGGCGGTGTCCCGA GCTATTGGGGACATGCATTTGAAGCCTTACGTGACTCCTGAGCCGGAGGT GACGGAGTGGGAGGTTGCGGAGGATGACTTATTTTTGATTCTCGCAAGTG ATGGTACGTGTTGCATTGGCCTTCTCTCTTTCCCTCTCTCTATGTCTCCC TTCGTTGGTTAATTGATTGCGGTATGAAGGTTCGGGCCTTAAATTTCATG TCACTTTTCAACCACTTATTTGCTCATGTCTTTCTTTGCCAGACACATTA TTAATTCATTTGTTGGTAGATTTATTCACATATCCACATGGTTATTCATT CACTCACTTGTTTTACTGCAGGTATATGGGATGTGCTTTCGAATGAGATG GTGGCTGCATTTGTGGTCAACCACAGTCACGACGTCAAGCTGGCAGCCAA GAGACTCTGTCGCGAGGCCTCTCTGAATGGCTCCATGGACAATTTATGTG CTGTCGTTATTGACCTGCGAGAGATCCGACGGAGGAGGGGGAACAGCATC GACAGATTAAGTCAGCAGCAGCCTTCTTCCTTTCCCCCGTCCTGATCTAT CTCCTCTCGAAAGAGGGGAGGGAGGAGGTTTGAAAGATTGAGCTTCAAGG TATCAAGACAACAGATAGAATAGAATGGGAATTTAAAAAAAGGGTGCAGA GGAGCGAGTGTGTTTTGTAGAAAGATTGTGAATACATGCGGAAGGACGTC GTGCGAGCGTGCTGAAGGGTAGAGTCTATTGAGTGATAGGGATAGAGAGA CATTGAGTGGCCAGCACAGCCAGCACGTCTGGAAGGGGAACCTGATATCG TTTTCCTTTGCACACCTTTTATTCAAATCAAAATCTTTGAAATCAGGAAA ATATGAGATAAATAAAGAAGAAAAAAGATGTCAGCATTCTTTGGGAGC back to topprotein sequence of NO04G04590.3 >NO04G04590.3-protein ID=NO04G04590.3-protein|Name=NO04G04590.3|organism=Nannochloropsis oceanica|type=polypeptide|length=343bp MAPSTFSFSSASTPSSGEPPPWSPLTSLVPSVLFAIVLLYGLHHLLRFLF NTLSPHPTPAFSSSRSSSIISDGQAHVHCNRDNSSDLMRALDDIDSPSQT IPPSSLYSPSTPPSPFPSNVHLPCSHWAETGGRQYMEDRLSFRGRLEGRN DASLYAVFDGHGGALASEFCAQELPRYVVGSEEGWEVATKAALRDAFMKT DAAFVKATEGTNRLDGTTALVALIRGTQLFVANAGDSRAILVQRGARVVP LSRDHKPSLPDELQRITEMGGKVIFWGRWRVEGILAVSRAIGDMHLKPYV TPEPEVTEWEVAEDDLFLILASDGTCCIGLLSFPLSMSPFVG* back to topmRNA from alignment at chr4:1247415..1251571+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G04590.3 ID=NO04G04590.3|Name=NO04G04590.3|organism=Nannochloropsis oceanica|type=mRNA|length=4157bp|location=Sequence derived from alignment at chr4:1247415..1251571+ (Nannochloropsis oceanica) TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTG
TTGTTGTTGTTGTTATTGTTGAGGAAACCGCGAGAAGCGGCGGCTAGCAG
CCCCACGAATGGTCGCTAGTCACCTGCGCTTCTTGCCTGATGCCGGAAAA
AAATGTGCTGTCCCTCCTCGTTTCTGCCCCTCTCTCTCCACCTCCACCTC
CATCTTTATCCTGTAGAAGACGTAGCCCCTCTCCTACTTTGTAACCTTCT
TCCCCTACTTTCCTCTCTCCGTCATCACCTTCCAAATCATCTCTCAAGTG
CTCCCGTGCCCCATAGGTCCATCCTCGTCTCTCCTTACTCCCTCCCTCCC
TCCTTACTTCTCTCCTTGCTTCCCCTTCTTTTTCATGTCCTTTTCGGCGT
CCTCCTCCGCAAGGCTCACAGCCGCCGAGGCGAGCTGCGCCACGTTCACC
ACCTGCTTAATGCCGGCCAAGACCATCGTGATCCACCACAAACTCTCCAA
AATATCGATCGGAAAGTGCACCTTCATCTCCGGGTGCAACCATTCCGGTG
CGGCCACACGCCCGAATGTCACACCCTTCTCCTTAATAAAATTCAAGAGG
TAAAAGAACTCCTGCCCGGTGCAACAGGCAAAAAACAAGGGTTTACACGC
ATAATACCACTGCAAAATGAAATTCTTCCCCGCCGTAGCCTCCGCTGACT
TGTGGTGCCGACCTGCCGCTGCGATGCAATGAAACCAATGGCTCGAAATG
TCAAGCATGCACAGACTGATCCACCCGAATTTTTTCCAGTCCTCGATCTC
TACCAACAAATTAATCATCACCAACCCCGCAGTCGCTGTCCTATCCGTTA
CCATGTCCAGAACTCCTCCAAATCCACTCTCCTGTCCCACCATTCGTGCC
ACGTGCCCGTCGACGGCATCCAAGGCAAAAGCCAAGAAATACAACCCAAC
CACGTTTTCCCACTTTGCCTTACGTTGCACACCCAAGTAAAGGGAGTAAA
GCGTGGCAATCACACGCAGGTACCCGATCAGATTGGGGAGGTAGAAGAAG
ATGGACCACTTGCTTGTCGCACGGCTGCTCGTGATATTGCTTGGTTTGTT
GCTCTTTTTGCTGCTGGCAATGCTGCTGGGGCTCGTGATGGTTGTGCTGG
GAGTCTTCCTCACAGCGGCGGAGGAGCCAGAAATGGTCGCACGCCGGCTA
CTTGCGCGGGGCTTGATAGTAGTAGTGGCAACGTCGGTGCTGTCGTCGTT
GATGGTGCTCTTGACCGTGCGCCCACCGCGGGTGCGGTAGGGGCTAGTTC
TAGGCATCGCGCGCTGTGGAATTGGAGAGGGAGAGGGGAAAAGGGAAGGG
GATTGGAGATCAGGCGTGCGCCTGGTGCTGTCGGTGCGATACATTCAGCA
TATGTTGGCGAAAATGGTGATGCACGGCGTTGTGTCGATCTAATTGTGGT
GAGGGTGCGAGCGCTTGGAAGCTGGAGGCCCATCTCAGATATGATGATGC
CTCAGTGAGGCAGGCGCTTGCAGGTCGTCGGTCTCGAGTCCTAAAACACG
AAAAGGGCCGCGCTGACAACAGCATCTCCTGAAAAAAGAGAAGGGACGTG
CATGGGGAGGGTGTTGCTGATTTTGTTGGCAGCTTGTGGCGTGAGAACGA
GATTCACGTAGGCAACGACCTTAGCACAACAGTTTTCGCGCGACATGCAA
GGAAGGATTAAGGTCAACTGCAGGTCAAGGCAATTTTGCTTTCCCACTTT
CTTAGGTCGAGATGACCAAACTGCAGTAGACTCAATCTTTTCCCCAGTCA
TGGTATGCAGATGCCTTTTTATGCTTGCTTCCAATTTGCACTTGAGCCAC
CGGTGAAGAAAATTCTCTTCCAAATTAGAGTACTTTGAATTTGCGCTGCA
TGCCCTCATACCCCGCCCCACCTCTACAACACAGGTGCAGCATCAGCCAT
GTGCGAGAGAGAAGCCTGCAGAAGCACCCCCACTGCCTGAGCTTTGACTT
TATCAAGAAGCGGTCGCTATTGAGGCCCCGACAATGGCGCCCAGGTAAGC
CGCAAGCAAAGGAGCGAGTGGGGCGGGGAATGGGGGCGGATCAGACCGAC
GCCAAACATTTCTAAACAGACTTGTATAAACATGCCCACTCATGCGCCTT
CATGAGCATGGGATATCAAGGCCAGGGATTATGCTAGAAGCCACTTTGTG
CCATGAAATGTCGTCGTCCCTGTGTTTTAAGTCATGCGCGTCGCGCTGGT
GAAGCCCTCCGATCACACGACATTATGTCTGCCGCCCCAATGGACATGTC
ATGTCATGTGCGCATAGATCTCAACCCCAACGCCATAGCATATACCATAT
CATCGTTCTTATTCAAACCCCCGACCCTCAACCCTCGCGAACCACCACAA
CAGCACTTTTTCCTTCTCCTCCGCCTCTACCCCATCCTCTGGCGAACCCC
CGCCCTGGTCGCCCTTAACCTCCCTTGTCCCTTCCGTCTTATTTGCCATC
GTCCTCCTTTACGGCCTCCATCATCTGCTCCGTTTTCTCTTCAATACCTT
GTCCCCGCATCCCACCCCTGCCTTTAGCAGCAGCCGCAGCAGCAGCATCA
TAAGTGATGGCCAAGCACACGTTCACTGCAATCGCGATAACTCTTCCGAC
CTCATGCGCGCCCTCGACGACATCGACTCCCCCTCCCAGACCATTCCTCC
CTCCTCCTTATACTCTCCCTCTACGCCCCCAAGCCCCTTCCCGTCCAACG
TCCATTTGCCTTGCTCCCACTGGGCAGAAACTGGGGGCAGGCAGTACATG
GAAGATCGCCTCTCGTTTCGAGGGAGACTGGAAGGGAGGAATGACGCGTC
TTTGTACGCTGTTTTTGACGGGCACGGTGGTGCCTTGGCGAGTGAGTTTT
GTGCGCAGGAGCTGCCACGATATGTGGTGGGGAGTGAGGAGGGGTGGGAG
GTGGCGACGAAAGCGGCCTTAAGAGACGCCTTCATGAAGACAGATGCAGC
GTTTGTCAAGGCGACTGAGGGGACGAATCGATTGGATGGGACGACGGCCT
TGGTGGCTTTGATAAGGGGAACTCAATTGTTCGTGGCCAACGCCGGGGAC
AGCAGGGCTATTTTGGTGCAGAGAGGAGCGAGGGTCGTGCCTCTGAGTCG
TGACCACAAGCCGAGTCTACCGGACGAATTGCAGAGGATAACGGAAATGG
GTGGCAAAGTCATATTTTGGGGTCGGTGGAGGGTGGAGGGGATTCTGGCG
GTGTCCCGAGCTATTGGGGACATGCATTTGAAGCCTTACGTGACTCCTGA
GCCGGAGGTGACGGAGTGGGAGGTTGCGGAGGATGACTTATTTTTGATTC
TCGCAAGTGATGGTACGTGTTGCATTGGCCTTCTCTCTTTCCCTCTCTCT
ATGTCTCCCTTCGTTGGTTAATTGATTGCGGTATGAAGGTTCGGGCCTTA
AATTTCATGTCACTTTTCAACCACTTATTTGCTCATGTCTTTCTTTGCCA
GACACATTATTAATTCATTTGTTGGTAGATTTATTCACATATCCACATGG
TTATTCATTCACTCACTTGTTTTACTGCAGGTATATGGGATGTGCTTTCG
AATGAGATGGTGGCTGCATTTGTGGTCAACCACAGTCACGACGTCAAGCT
GGCAGCCAAGAGACTCTGTCGCGAGGCCTCTCTGAATGGCTCCATGGACA
ATTTATGTGCTGTCGTTATTGACCTGCGAGAGATCCGACGGAGGAGGGGG
AACAGCATCGACAGATTAAGTCAGCAGCAGCCTTCTTCCTTTCCCCCGTC
CTGATCTATCTCCTCTCGAAAGAGGGGAGGGAGGAGGTTTGAAAGATTGA
GCTTCAAGGTATCAAGACAACAGATAGAATAGAATGGGAATTTAAAAAAA
GGGTGCAGAGGAGCGAGTGTGTTTTGTAGAAAGATTGTGAATACATGCGG
AAGGACGTCGTGCGAGCGTGCTGAAGGGTAGAGTCTATTGAGTGATAGGG
ATAGAGAGACATTGAGTGGCCAGCACAGCCAGCACGTCTGGAAGGGGAAC
CTGATATCGTTTTCCTTTGCACACCTTTTATTCAAATCAAAATCTTTGAA
ATCAGGAAAATATGAGATAAATAAAGAAGAAAAAAGATGTCAGCATTCTT
TGGGAGC back to topCoding sequence (CDS) from alignment at chr4:1247415..1251571+ >NO04G04590.3 ID=NO04G04590.3|Name=NO04G04590.3|organism=Nannochloropsis oceanica|type=CDS|length=1029bp|location=Sequence derived from alignment at chr4:1247415..1251571+ (Nannochloropsis oceanica) ATGGCGCCCAGCACTTTTTCCTTCTCCTCCGCCTCTACCCCATCCTCTGG CGAACCCCCGCCCTGGTCGCCCTTAACCTCCCTTGTCCCTTCCGTCTTAT TTGCCATCGTCCTCCTTTACGGCCTCCATCATCTGCTCCGTTTTCTCTTC AATACCTTGTCCCCGCATCCCACCCCTGCCTTTAGCAGCAGCCGCAGCAG CAGCATCATAAGTGATGGCCAAGCACACGTTCACTGCAATCGCGATAACT CTTCCGACCTCATGCGCGCCCTCGACGACATCGACTCCCCCTCCCAGACC ATTCCTCCCTCCTCCTTATACTCTCCCTCTACGCCCCCAAGCCCCTTCCC GTCCAACGTCCATTTGCCTTGCTCCCACTGGGCAGAAACTGGGGGCAGGC AGTACATGGAAGATCGCCTCTCGTTTCGAGGGAGACTGGAAGGGAGGAAT GACGCGTCTTTGTACGCTGTTTTTGACGGGCACGGTGGTGCCTTGGCGAG TGAGTTTTGTGCGCAGGAGCTGCCACGATATGTGGTGGGGAGTGAGGAGG GGTGGGAGGTGGCGACGAAAGCGGCCTTAAGAGACGCCTTCATGAAGACA GATGCAGCGTTTGTCAAGGCGACTGAGGGGACGAATCGATTGGATGGGAC GACGGCCTTGGTGGCTTTGATAAGGGGAACTCAATTGTTCGTGGCCAACG CCGGGGACAGCAGGGCTATTTTGGTGCAGAGAGGAGCGAGGGTCGTGCCT CTGAGTCGTGACCACAAGCCGAGTCTACCGGACGAATTGCAGAGGATAAC GGAAATGGGTGGCAAAGTCATATTTTGGGGTCGGTGGAGGGTGGAGGGGA TTCTGGCGGTGTCCCGAGCTATTGGGGACATGCATTTGAAGCCTTACGTG ACTCCTGAGCCGGAGGTGACGGAGTGGGAGGTTGCGGAGGATGACTTATT TTTGATTCTCGCAAGTGATGGTACGTGTTGCATTGGCCTTCTCTCTTTCC CTCTCTCTATGTCTCCCTTCGTTGGTTAA back to top
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