NO04G04560.1, NO04G04560.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G04560.1
Unique NameNO04G04560.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length594
Alignment locationchr4:1242989..1244334 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1242989..1244334 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G04560.1 vs.
Match: XP_009032695.1 (hypothetical protein AURANDRAFT_19240 [Aureococcus anophagefferens]; EGB13096.1 hypothetical protein AURANDRAFT_19240 [Aureococcus anophagefferens])

HSP 1 Score: 183.7 bits (465), Expect = 5.500e-43
Identity = 87/175 (49.71%), Postives = 117/175 (66.86%), Query Frame = 0 
Query:    3 TPGLVSAAMAPYVESMYEE--CLSPRCTEKCRNRQIGNLTKAEEYEALTGFYVSIAGWSYGTPPCDDACDAQDLDLLKANVAEYGPASICVNAESWGLYVEGVLMTEACGSYAYDSLDHCVNIVGYNDNAPEPYFVVRNSWSTLWGMDGHIRLSSRNNTCGLANEVTFVSIAPEE 176
            TPGL +    PYV+ M  +  CLSP+CTE CR   IG  T+ EE   LTG Y  +A +S+ T  C D C+ QDL  L+  VA +GPASICVNA +W +Y  GV+ T  CGSY ++ LDHCV +VG+N ++  PY++V+N WST WG+DG+I L +RNNTCG+A+  TF  + P +
Sbjct:   70 TPGLSNLWYYPYVQGMGSQRTCLSPKCTETCRG--IG--TEVEE-TLLTGVYAQVANYSWATKGCFDDCEDQDLYGLRKAVAAHGPASICVNAANWDVYAGGVMSTATCGSYNFNDLDHCVGLVGFNMDSDPPYWIVKNQWSTTWGVDGYIFLDARNNTCGVADTATFAKVFPPD 239
The following BLAST results are available for this feature:
BLAST of NO04G04560.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_009032695.15.500e-4349.71hypothetical protein AURANDRAFT_19240 [Aureococcus... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G04560NO04G04560Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G04560.1NO04G04560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G04560.1.cds1NO04G04560.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04560.1.cds2NO04G04560.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04560.1.cds3NO04G04560.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04560.1.cds4NO04G04560.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G04560.1 ID=NO04G04560.1|Name=NO04G04560.1|organism=Nannochloropsis oceanica|type=mRNA|length=594bp
ATGCAGACCCCGGGGCTGGTGAGCGCCGCCATGGCCCCTTATGTCGAGAG
CATGTACGAGGAGTGTCTGTCGCCGCGATGCACGGAAAAATGCCGCAACC
GGCAGATTGGGAACCTGACCAAGGCGGAGGAGTACGAGGCATTGACTGGA
TTCTACGTCTCTATCGCCGGCTGGTCCTACGGCACTCCGCCCTGCGACGA
CGCCTGCGACGCGCAAGACCTTGACCTCTTGAAGGCGAATGTGGCGGAAT
ATGGGCCCGCCTCCATATGTGTCAACGCCGAGAGCTGGGGGTTGTACGTC
GAGGGTGTACTAATGACGGAGGCTTGCGGGAGCTACGCCTACGATTCTCT
CGATCACTGCGTCAATATTGTGGGATACAATGACAACGCACCCGAGCCGT
ATTTCGTGGTTCGTAATTCGTGGTCAACCTTGTGGGGTATGGATGGCCAT
ATCCGCCTGTCATCGAGGAACAACACATGCGGCTTGGCCAACGAGGTGAC
GTTTGTCTCGATCGCACCGGAGGAGGAGGAGGAGGGGGGGAGAATGAGGG
AGGGGGGCGGGGATGGAGACAGGGAGGGAAGAGGCGATAACTGA
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protein sequence of NO04G04560.1

>NO04G04560.1-protein ID=NO04G04560.1-protein|Name=NO04G04560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=198bp
MQTPGLVSAAMAPYVESMYEECLSPRCTEKCRNRQIGNLTKAEEYEALTG
FYVSIAGWSYGTPPCDDACDAQDLDLLKANVAEYGPASICVNAESWGLYV
EGVLMTEACGSYAYDSLDHCVNIVGYNDNAPEPYFVVRNSWSTLWGMDGH
IRLSSRNNTCGLANEVTFVSIAPEEEEEGGRMREGGGDGDREGRGDN*
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mRNA from alignment at chr4:1242989..1244334+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G04560.1 ID=NO04G04560.1|Name=NO04G04560.1|organism=Nannochloropsis oceanica|type=mRNA|length=1346bp|location=Sequence derived from alignment at chr4:1242989..1244334+ (Nannochloropsis oceanica)
ATGCAGACCCCGGGGCTGGTGAGCGCCGCCATGGCCCCTTATGTCGAGAG
CATGTACGAGGAGTGTCTGTCGCCGCGATGCACGGAAAAATGCCGCAACC
GGCAGATTGGGAACCTGACCAAGGCGGAGGAGTACGAGGCATTGACTGGT
ACGTACGTACGTACGTGTGTACCTGGAATGTGGATTTGTATGTGGGTGGT
AATCAATGGCGTGGGTGTTTGTCGTACTCGTGTGTATGTGGGTATGTGTG
TGTATGTAAAGGTGTGTGGGAATGGGTTAGAGATGAAGGAAGGAAAGACG
GGCATGCCATTGTCCCACGTGAAGACTTTCCCCCCTTATTCATCCCCCCC
CCCTCCCTCCCTCCCTCCACCTACATTTCTCGACTCCGCACACATACTTT
CCCTCTGTCCCTCCCACTCGTCGTTCTCCAATTCCCTTCCACAACACTCA
AGAGTCCCTCCCTCCCGCCCTCCCCCCTCCTTCCCTAGGATTCTACGTCT
CTATCGCCGGCTGGTCCTACGGCACTCCGCCCTGCGACGACGCCTGCGAC
GCGCAAGACCTTGACCTCTTGAAGGCGAATGTGGCGGAATATGGGCCCGC
CTCCATATGTGTCAACGCCGAGAGCTGGGGGTTGTACGTCGAGGTACGTC
GTCTCCCGCCCTCCTGCCCTCCCTCCCTCCCTCCCTCCCCCCCCCTCTTT
CTTTCTTCATCCCTTCCTCCTCCCCTCTCTTTCTCCCTTCTTCCCTCCCT
CCTCCCCATTATTCTTCTGCAGGGTGTGCTGATGACCGAGGTCTGCGGAG
GCCACGGCTACAACTTATCTCTCCCTCCCTCCCTCCCTTCCTCTTTCCCG
CTCTCCCCCTCTTAGGGTGTACTAATGACGGAGGCTTGCGGGAGCTACGC
CTACGATTCTCTCGATCACTGCGTCAATATTGTGGGATACAATGACAACG
CACCCGAGCCGTATTTCGTGGTCAGTCCTCAGCCCTCCCCCCCTCCCCCA
TTATCTCCTTGAGCATTCTATCTCCTTGATCACTGATGTCTGAATGGCGC
TCGACCACACCCCTCCCTCAATCCCTTCTCCCTCCTTCCCCTTCTCTCCC
CCTCCCTCCCTCCTCCCCTCCTTCGCCCCCTCCCTCCCTCCCTCCTTCGC
CCCCTCCCAGGTTCGTAATTCGTGGTCAACCTTGTGGGGTATGGATGGCC
ATATCCGCCTGTCATCGAGGAACAACACATGCGGCTTGGCCAACGAGGTG
ACGTTTGTCTCGATCGCACCGGAGGAGGAGGAGGAGGGGGGGAGAATGAG
GGAGGGGGGCGGGGATGGAGACAGGGAGGGAAGAGGCGATAACTGA
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Coding sequence (CDS) from alignment at chr4:1242989..1244334+

>NO04G04560.1 ID=NO04G04560.1|Name=NO04G04560.1|organism=Nannochloropsis oceanica|type=CDS|length=594bp|location=Sequence derived from alignment at chr4:1242989..1244334+ (Nannochloropsis oceanica)
ATGCAGACCCCGGGGCTGGTGAGCGCCGCCATGGCCCCTTATGTCGAGAG
CATGTACGAGGAGTGTCTGTCGCCGCGATGCACGGAAAAATGCCGCAACC
GGCAGATTGGGAACCTGACCAAGGCGGAGGAGTACGAGGCATTGACTGGA
TTCTACGTCTCTATCGCCGGCTGGTCCTACGGCACTCCGCCCTGCGACGA
CGCCTGCGACGCGCAAGACCTTGACCTCTTGAAGGCGAATGTGGCGGAAT
ATGGGCCCGCCTCCATATGTGTCAACGCCGAGAGCTGGGGGTTGTACGTC
GAGGGTGTACTAATGACGGAGGCTTGCGGGAGCTACGCCTACGATTCTCT
CGATCACTGCGTCAATATTGTGGGATACAATGACAACGCACCCGAGCCGT
ATTTCGTGGTTCGTAATTCGTGGTCAACCTTGTGGGGTATGGATGGCCAT
ATCCGCCTGTCATCGAGGAACAACACATGCGGCTTGGCCAACGAGGTGAC
GTTTGTCTCGATCGCACCGGAGGAGGAGGAGGAGGGGGGGAGAATGAGGG
AGGGGGGCGGGGATGGAGACAGGGAGGGAAGAGGCGATAACTGA
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Synonyms
Publications