NO04G04560, NO04G04560 (gene) Nannochloropsis oceanica

Overview
NameNO04G04560
Unique NameNO04G04560
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1346
Alignment locationchr4:1242989..1244334 +

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Properties
Property NameValue
DescriptionCysteine proteinase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1242989..1244334 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO:0006508proteolysis
Vocabulary: Molecular Function
TermDefinition
GO:0008234cysteine-type peptidase activity
GO:0008234cysteine-type peptidase activity
Vocabulary: INTERPRO
TermDefinition
IPR038765Papain_like_cys_pep_sf
IPR013128Peptidase_C1A
IPR000668Peptidase_C1A_C
Homology
BLAST of NO04G04560 vs. NCBI_GenBank
Match: XP_009032695.1 (hypothetical protein AURANDRAFT_19240 [Aureococcus anophagefferens] >EGB13096.1 hypothetical protein AURANDRAFT_19240 [Aureococcus anophagefferens])

HSP 1 Score: 183.7 bits (465), Expect = 5.500e-43
Identity = 86/175 (49.14%), Postives = 116/175 (66.29%), Query Frame = 0
Query:    3 TPGLVSAAMAPYVESMYEE--CLSPRCTEKCRNRQIGNLTKAEEYEALTGFYVSIAGWSYGTPPCDDACDAQDLDLLKANVAEYGPASICVNAESWGLYVEGVLMTEACGSYAYDSLDHCVNIVGYNDNAPEPYFVVRNSWSTLWGMDGHIRLSSRNNTCGLANEVTFVSIAPEE 176
            TPGL +    PYV+ M  +  CLSP+CTE CR    G  T+ EE   LTG Y  +A +S+ T  C D C+ QDL  L+  VA +GPASICVNA +W +Y  GV+ T  CGSY ++ LDHCV +VG+N ++  PY++V+N WST WG+DG+I L +RNNTCG+A+  TF  + P +
Sbjct:   70 TPGLSNLWYYPYVQGMGSQRTCLSPKCTETCR----GIGTEVEE-TLLTGVYAQVANYSWATKGCFDDCEDQDLYGLRKAVAAHGPASICVNAANWDVYAGGVMSTATCGSYNFNDLDHCVGLVGFNMDSDPPYWIVKNQWSTTWGVDGYIFLDARNNTCGVADTATFAKVFPPD 239          
BLAST of NO04G04560 vs. NCBI_GenBank
Match: KOO22621.1 (cysteine proteinase [Chrysochromulina sp. CCMP291])

HSP 1 Score: 136.7 bits (343), Expect = 7.600e-29
Identity = 68/169 (40.24%), Postives = 97/169 (57.40%), Query Frame = 0
Query:    5 GLVSAAMAPYVESMYEECLSPRCTEKCRNRQIGNLTKAEEYEALTGFYVSIAGWSYGTPPC-DDACDAQDLDLLKANVAEYGPASICVNAESWGLYVEGVLMTEACGSYAYDSLDHCVNIVGYNDNAPEPYFVVRNSWSTLWGMDGHIRLSSRNNTCGLANEVTFVSIA 173
            GL ++   PY++S+     +   T+ C   ++  +        LTG Y +++G+ Y T PC   AC  QDL  L+A + E  P S+CVNA SW  Y  GV+ + ACGS A  + DHCV   G+N  AP PY++VRNSWS+ WG  G+I L    NTCG+A++ T   +A
Sbjct:  199 GLTNSFNYPYMQSL----TATSATQACNTAKVAAID--GPMMQLTGGYAAVSGYHYATTPCTSGACANQDLAALQAAI-ETTPVSVCVNAASWNDYTGGVMTSAACGSMAAKAQDHCVMATGFNTTAPTPYWIVRNSWSSTWGEYGYIYLEMAENTCGIADDATIPEVA 360          
BLAST of NO04G04560 vs. NCBI_GenBank
Match: OLQ02337.1 (Digestive cysteine proteinase 2 [Symbiodinium microadriaticum])

HSP 1 Score: 129.8 bits (325), Expect = 9.300e-27
Identity = 61/138 (44.20%), Postives = 83/138 (60.14%), Query Frame = 0
Query:   45 YEALTGFYVSIAGWSYGTPPC-DDACDAQDLDLLKANVAEYGPASICVNAESWGLYVEGVLMTEACGSYAYDSLDHCVNIVGYNDNAPEPYFVVRNSWSTLWGMDGHIRLSSRNNTCGLANEVTFVSIAPEEEEEGGR 182
            Y  L+G Y ++ G+SY   PC + +C+ QDL+ L A   E  P S+CVNA  W  Y  GVL + ACG       DHCV  VG+N  AP+PY++VRNSW++ WGM G+I L    NTCG+A++ T   +  +  EE  R
Sbjct: 2692 YMQLSGGYAAVTGYSYAVKPCTEGSCENQDLNGLAA-ALEQSPISVCVNAGVWNDYTGGVLSSAACGPMGAAYQDHCVMAVGFNATAPKPYWIVRNSWASTWGMQGYIYLEMAKNTCGVADDATIPEVKVDLSEEEAR 2828          
BLAST of NO04G04560 vs. NCBI_GenBank
Match: XP_009040822.1 (hypothetical protein AURANDRAFT_5922, partial [Aureococcus anophagefferens] >EGB04435.1 hypothetical protein AURANDRAFT_5922, partial [Aureococcus anophagefferens])

HSP 1 Score: 124.0 bits (310), Expect = 5.100e-25
Identity = 74/181 (40.88%), Postives = 89/181 (49.17%), Query Frame = 0
Query:   10 AMAPYVESMYEECLSPRCTEK-----CRNRQIGNLTKAEEYEALT---GFYVSIAGWSY----------GTPPCDDACDAQDLDLLKANVAEYGPASICVNAESWGLYVEGVLMTEACGSYAYDSLDHCVNIVGYNDNAPE-PYFVVRNSWSTLWGMDGHIRLSSRNNTCGLANEVTFVSI 172
            A AP VE   ++  S  CT       C     G+ T A EY A     G     A W Y            P C   CD  D D L A + E  P S+C+NA +W  Y  GVL   ACG +  D +DHCV +VGYN   PE  Y++VRNSWST WG DG+I LS   N CG+ANE T   +
Sbjct:   53 AGAPQVELSTQQVAS--CTADPQLMCCDGCAGGDPTAAYEYLAWASRKGGLAPDAWWPYEQGLTPDEVCEAPACTKTCDKDDTDQLAARL-EASPLSVCLNAGAWDDYTGGVLSEAACGGHGADDVDHCVQLVGYNKTEPENSYWIVRNSWSTSWGEDGYIYLSMDGNACGVANEATLAVV 230          
BLAST of NO04G04560 vs. NCBI_GenBank
Match: BAK00754.1 (predicted protein [Hordeum vulgare subsp. vulgare])

HSP 1 Score: 121.3 bits (303), Expect = 3.300e-24
Identity = 51/117 (43.59%), Postives = 72/117 (61.54%), Query Frame = 0
Query:   55 IAGWSYGTPPCDDACDAQDLDLLKANVAEYGPASICVNAESWGLYVEGVLMTEACGSYAYDSLDHCVNIVGYNDNAPEPYFVVRNSWSTLWGMDGHIRLSSRNNTCGLANEVTFVSI 172
            I+G+ Y  P C D+C  QD + +   + E  P S+CV+AE W  Y  G++  + C S  +  LDHCV  VGY+    +PY++VRNSW+T WG DG IRL+   NTCG+ +  T+V I
Sbjct:  226 ISGFGYAIPTCSDSCTNQDENSMAQYMQENSPLSVCVDAEPWQFYSSGIMTVDQCPS-DFSGLDHCVQAVGYDATGSQPYWIVRNSWNTNWGEDGFIRLALGTNTCGIGDVATYVKI 341          
BLAST of NO04G04560 vs. NCBI_GenBank
Match: XP_009032801.1 (hypothetical protein AURANDRAFT_18666 [Aureococcus anophagefferens] >EGB13210.1 hypothetical protein AURANDRAFT_18666 [Aureococcus anophagefferens])

HSP 1 Score: 118.6 bits (296), Expect = 2.200e-23
Identity = 57/147 (38.78%), Postives = 81/147 (55.10%), Query Frame = 0
Query:   37 GNLTKAEEYEALTGFYVSIAGWSYGTPPCDDA-CDAQDLDLLKANVAEYGPASICVNAESWGLYVEGVLMTEACGSYAYDSLDHCVNIVGYNDNAPEP-----------YFVVRNSWSTLWGMDGHIRLSSRNNTCGLANEVTFVSI 172
            GN  + +++E   G    +  +SY  P C    C+ QD D + A +A +GPASICVNA +W  Y +GV+    CGS+A ++LDHCV +VGY     +             + VRNSW T WG  G+IR+    N CG+AN+ TF  +
Sbjct:  202 GNTGRCKKFETAGG---DVESFSYVVPECKKGKCNDQDEDKMAAALASHGPASICVNAGAWQTYTKGVMTNLQCGSHAANALDHCVQVVGYTGYTGDAKACGKGLKDKCVWNVRNSWGTSWGYQGYIRVQMGKNACGIANDATFAKV 345          
BLAST of NO04G04560 vs. NCBI_GenBank
Match: XP_009037507.1 (hypothetical protein AURANDRAFT_5846, partial [Aureococcus anophagefferens] >EGB07772.1 hypothetical protein AURANDRAFT_5846, partial [Aureococcus anophagefferens])

HSP 1 Score: 109.0 bits (271), Expect = 1.700e-20
Identity = 63/161 (39.13%), Postives = 80/161 (49.69%), Query Frame = 0
Query:    5 GLVSAAMAPYVESMY--EECLSPRCTEKCRNRQIGNLTKAEEYEALTGFYVSIAGWSYGTPPCDDACDAQDLDLLK-ANVAEYGPASICVNAESWGLYVEGVLMTEACGSYAYDSLDHCVNIVGYNDNAPEPYFVVRNSWSTLWGMDGHIRLSSRNNTCGL 163
            GL  AA  PY +++   EECL P CT  C                                      D  +LDL + A   +  PA++CVNA +W  Y  GVL  +AC S AY  +DHCV +VGY+    EPY++VRNSWST WG DG+IRL    NTCG+
Sbjct:   85 GLSPAAYWPYTQALTPDEECLGPFCTNAC------------------------------------DMDLSELDLGELAKTIQATPAAVCVNAGAWDDYTGGVLRYDAC-SGAYADIDHCVQLVGYDATGEEPYWIVRNSWSTSWGEDGYIRLQMDANTCGV 208          
BLAST of NO04G04560 vs. NCBI_GenBank
Match: XP_013762925.1 (cruzipain [Thecamonas trahens ATCC 50062] >KNC45942.1 cruzipain [Thecamonas trahens ATCC 50062])

HSP 1 Score: 105.5 bits (262), Expect = 1.900e-19
Identity = 52/117 (44.44%), Postives = 68/117 (58.12%), Query Frame = 0
Query:   55 IAGWSYGTPPCDDACDAQDLDLLKANVAEYGPASICVNAESWGLYVEGVLMTEACGSYAYDSLDHCVNIVGYNDNAPEPYFVVRNSWSTLWGMDGHIRLSSRNNTCGLANEVTFVSI 172
            I G++Y T P       ++   L AN+   GP SICV+A SW  Y  G+L      S+    LDHCV I G+  +  E Y+ VRNSW+T WGM G+I+L    NTCGLA+E T V+I
Sbjct:  222 IMGYNYATSP-----STKNETQLAANLMSTGPVSICVDASSWQTYTSGIL------SHCGKQLDHCVQITGWGTSGSEMYWWVRNSWATSWGMSGYIQLKFGQNTCGLADEATIVTI 327          
BLAST of NO04G04560 vs. NCBI_GenBank
Match: XP_004363040.1 (hypothetical protein DFA_03437 [Cavenderia fasciculata] >EGG25189.1 hypothetical protein DFA_03437 [Cavenderia fasciculata])

HSP 1 Score: 104.0 bits (258), Expect = 5.500e-19
Identity = 49/100 (49.00%), Postives = 64/100 (64.00%), Query Frame = 0
Query:   77 LKANVAEYGPASICVNAESWGLYVEGVLMTEACGSYAYDSLDHCVNIVGYNDNAPE--PYFVVRNSWSTLWGMDGHIRLSSRNNTCGLANEVTFVSIAPE 175
            L+  +A  GP SICVNAE W  Y  G+       S   D LDHCV IVGY+ +A    PYF+VRNSW T WG+ G+I + + +N CG+ NEVT+VS+ P+
Sbjct:  236 LREAMAARGPLSICVNAEPWMSYQSGIF-----SSTCSDDLDHCVQIVGYDTDATSKTPYFIVRNSWGTDWGLLGYIYIQAGSNLCGITNEVTYVSVHPD 330          
BLAST of NO04G04560 vs. NCBI_GenBank
Match: OLP78299.1 (Serine/threonine-protein kinasePKR2 [Symbiodinium microadriaticum])

HSP 1 Score: 102.1 bits (253), Expect = 2.100e-18
Identity = 52/136 (38.24%), Postives = 71/136 (52.21%), Query Frame = 0
Query:   45 YEALTGFYVSIAGWSYGTPPC-DDACDAQDLDLLKANVAEYGPASICVNAESWGLYVEGVLMTEACGSYAYDSLDHCVNIVGYNDNAPEPYFVVRNSWSTLWGMDGHIRLSS-RNNTCGLANEVTFVSIAPEEEEE 179
            Y  L+G Y ++ G+SY   PC + +C+ Q                  VNA  W  Y  GVL   ACG       DHCV  VG+N  AP+PY++VRNSW++ WGM G+I L     NTCG+A++ T   +  +  EE
Sbjct: 1322 YMQLSGGYAAVTGYSYAVKPCTEGSCENQ------------------VNAGVWNDYTGGVLSAAACGPMGAAYQDHCVMAVGFNATAPKPYWIVRNSWASTWGMQGYIYLEMVAKNTCGVADDATIPEVKVDLSEE 1439          
The following BLAST results are available for this feature:
BLAST of NO04G04560 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_009032695.15.500e-4349.14hypothetical protein AURANDRAFT_19240 [Aureococcus... [more]
KOO22621.17.600e-2940.24cysteine proteinase [Chrysochromulina sp. CCMP291][more]
OLQ02337.19.300e-2744.20Digestive cysteine proteinase 2 [Symbiodinium micr... [more]
XP_009040822.15.100e-2540.88hypothetical protein AURANDRAFT_5922, partial [Aur... [more]
BAK00754.13.300e-2443.59predicted protein [Hordeum vulgare subsp. vulgare][more]
XP_009032801.12.200e-2338.78hypothetical protein AURANDRAFT_18666 [Aureococcus... [more]
XP_009037507.11.700e-2039.13hypothetical protein AURANDRAFT_5846, partial [Aur... [more]
XP_013762925.11.900e-1944.44cruzipain [Thecamonas trahens ATCC 50062] >KNC4594... [more]
XP_004363040.15.500e-1949.00hypothetical protein DFA_03437 [Cavenderia fascicu... [more]
OLP78299.12.100e-1838.24Serine/threonine-protein kinasePKR2 [Symbiodinium ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL082nonsL082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL078nonsL078Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR108ngnoR108Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G04560.1NO04G04560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G04560.1NO04G04560.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G04560 ID=NO04G04560|Name=NO04G04560|organism=Nannochloropsis oceanica|type=gene|length=1346bp
ATGCAGACCCCGGGGCTGGTGAGCGCCGCCATGGCCCCTTATGTCGAGAG
CATGTACGAGGAGTGTCTGTCGCCGCGATGCACGGAAAAATGCCGCAACC
GGCAGATTGGGAACCTGACCAAGGCGGAGGAGTACGAGGCATTGACTGgt
acgtacgtacgtacgtgtgtacctggaatgtggatttgtatgtgggtggt
aatcaatggcgtgggtgtttgtcgtactcgtgtgtatgtgggtatgtgtg
tgtatgtaaaggtgtgtgggaatgggttagagatgaaggaaggaaagacg
ggcatgccattgtcccacgtgaagactttccccccttattcatccccccc
ccctccctccctccctccacctacatttctcgactccgcacacatacttt
ccctctgtccctcccactcgtcgttctccaattcccttccacaacactca
agagtccctccctcccgccctcccccctccttccctagGATTCTACGTCT
CTATCGCCGGCTGGTCCTACGGCACTCCGCCCTGCGACGACGCCTGCGAC
GCGCAAGACCTTGACCTCTTGAAGGCGAATGTGGCGGAATATGGGCCCGC
CTCCATATGTGTCAACGCCGAGAGCTGGGGGTTGTACGTCGAGgtacgtc
gtctcccgccctcctgccctccctccctccctccctccccccccctcttt
ctttcttcatcccttcctcctcccctctctttctcccttcttccctccct
cctccccattattcttctgcagggtgtgctgatgaccgaggtctgcggag
gccacggctacaacttatctctccctccctccctcccttcctctttcccg
ctctccccctcttagGGTGTACTAATGACGGAGGCTTGCGGGAGCTACGC
CTACGATTCTCTCGATCACTGCGTCAATATTGTGGGATACAATGACAACG
CACCCGAGCCGTATTTCGTGgtcagtcctcagccctccccccctccccca
ttatctccttgagcattctatctccttgatcactgatgtctgaatggcgc
tcgaccacacccctccctcaatcccttctccctccttccccttctctccc
cctccctccctcctcccctccttcgccccctccctccctccctccttcgc
cccctcccagGTTCGTAATTCGTGGTCAACCTTGTGGGGTATGGATGGCC
ATATCCGCCTGTCATCGAGGAACAACACATGCGGCTTGGCCAACGAGGTG
ACGTTTGTCTCGATCGCACCGGAGGAGGAGGAGGAGGGGGGGAGAATGAG
GGAGGGGGGCGGGGATGGAGACAGGGAGGGAAGAGGCGATAACTGA
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protein sequence of NO04G04560.1

>NO04G04560.1-protein ID=NO04G04560.1-protein|Name=NO04G04560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=198bp
MQTPGLVSAAMAPYVESMYEECLSPRCTEKCRNRQIGNLTKAEEYEALTG
FYVSIAGWSYGTPPCDDACDAQDLDLLKANVAEYGPASICVNAESWGLYV
EGVLMTEACGSYAYDSLDHCVNIVGYNDNAPEPYFVVRNSWSTLWGMDGH
IRLSSRNNTCGLANEVTFVSIAPEEEEEGGRMREGGGDGDREGRGDN*
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Synonyms
Publications