NO04G04560, NO04G04560 (gene) Nannochloropsis oceanica

Overview
NameNO04G04560
Unique NameNO04G04560
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1346
Alignment locationchr4:1242989..1244334 +

Link to JBrowse

Properties
Property NameValue
DescriptionCysteine proteinase
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1242989..1244334 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO:0006508proteolysis
Vocabulary: Molecular Function
TermDefinition
GO:0008234cysteine-type peptidase activity
GO:0008234cysteine-type peptidase activity
Vocabulary: INTERPRO
TermDefinition
IPR038765Papain_like_cys_pep_sf
IPR013128Peptidase_C1A
IPR000668Peptidase_C1A_C
Homology
BLAST of NO04G04560 vs. NCBI_GenBank
Match: XP_009032695.1 (hypothetical protein AURANDRAFT_19240 [Aureococcus anophagefferens] >EGB13096.1 hypothetical protein AURANDRAFT_19240 [Aureococcus anophagefferens])

HSP 1 Score: 183.7 bits (465), Expect = 5.500e-43
Identity = 86/175 (49.14%), Postives = 116/175 (66.29%), Query Frame = 0
Query:    3 TPGLVSAAMAPYVESMYEE--CLSPRCTEKCRNRQIGNLTKAEEYEALTGFYVSIAGWSYGTPPCDDACDAQDLDLLKANVAEYGPASICVNAESWGLYVEGVLMTEACGSYAYDSLDHCVNIVGYNDNAPEPYFVVRNSWSTLWGMDGHIRLSSRNNTCGLANEVTFVSIAPEE 176
            TPGL +    PYV+ M  +  CLSP+CTE CR    G  T+ EE   LTG Y  +A +S+ T  C D C+ QDL  L+  VA +GPASICVNA +W +Y  GV+ T  CGSY ++ LDHCV +VG+N ++  PY++V+N WST WG+DG+I L +RNNTCG+A+  TF  + P +
Sbjct:   70 TPGLSNLWYYPYVQGMGSQRTCLSPKCTETCR----GIGTEVEE-TLLTGVYAQVANYSWATKGCFDDCEDQDLYGLRKAVAAHGPASICVNAANWDVYAGGVMSTATCGSYNFNDLDHCVGLVGFNMDSDPPYWIVKNQWSTTWGVDGYIFLDARNNTCGVADTATFAKVFPPD 239          
BLAST of NO04G04560 vs. NCBI_GenBank
Match: KOO22621.1 (cysteine proteinase [Chrysochromulina sp. CCMP291])

HSP 1 Score: 136.7 bits (343), Expect = 7.600e-29
Identity = 68/169 (40.24%), Postives = 97/169 (57.40%), Query Frame = 0
Query:    5 GLVSAAMAPYVESMYEECLSPRCTEKCRNRQIGNLTKAEEYEALTGFYVSIAGWSYGTPPC-DDACDAQDLDLLKANVAEYGPASICVNAESWGLYVEGVLMTEACGSYAYDSLDHCVNIVGYNDNAPEPYFVVRNSWSTLWGMDGHIRLSSRNNTCGLANEVTFVSIA 173
            GL ++   PY++S+     +   T+ C   ++  +        LTG Y +++G+ Y T PC   AC  QDL  L+A + E  P S+CVNA SW  Y  GV+ + ACGS A  + DHCV   G+N  AP PY++VRNSWS+ WG  G+I L    NTCG+A++ T   +A
Sbjct:  199 GLTNSFNYPYMQSL----TATSATQACNTAKVAAID--GPMMQLTGGYAAVSGYHYATTPCTSGACANQDLAALQAAI-ETTPVSVCVNAASWNDYTGGVMTSAACGSMAAKAQDHCVMATGFNTTAPTPYWIVRNSWSSTWGEYGYIYLEMAENTCGIADDATIPEVA 360          
BLAST of NO04G04560 vs. NCBI_GenBank
Match: OLQ02337.1 (Digestive cysteine proteinase 2 [Symbiodinium microadriaticum])

HSP 1 Score: 129.8 bits (325), Expect = 9.300e-27
Identity = 61/138 (44.20%), Postives = 83/138 (60.14%), Query Frame = 0
Query:   45 YEALTGFYVSIAGWSYGTPPC-DDACDAQDLDLLKANVAEYGPASICVNAESWGLYVEGVLMTEACGSYAYDSLDHCVNIVGYNDNAPEPYFVVRNSWSTLWGMDGHIRLSSRNNTCGLANEVTFVSIAPEEEEEGGR 182
            Y  L+G Y ++ G+SY   PC + +C+ QDL+ L A   E  P S+CVNA  W  Y  GVL + ACG       DHCV  VG+N  AP+PY++VRNSW++ WGM G+I L    NTCG+A++ T   +  +  EE  R
Sbjct: 2692 YMQLSGGYAAVTGYSYAVKPCTEGSCENQDLNGLAA-ALEQSPISVCVNAGVWNDYTGGVLSSAACGPMGAAYQDHCVMAVGFNATAPKPYWIVRNSWASTWGMQGYIYLEMAKNTCGVADDATIPEVKVDLSEEEAR 2828          
BLAST of NO04G04560 vs. NCBI_GenBank
Match: XP_009040822.1 (hypothetical protein AURANDRAFT_5922, partial [Aureococcus anophagefferens] >EGB04435.1 hypothetical protein AURANDRAFT_5922, partial [Aureococcus anophagefferens])

HSP 1 Score: 124.0 bits (310), Expect = 5.100e-25
Identity = 74/181 (40.88%), Postives = 89/181 (49.17%), Query Frame = 0
Query:   10 AMAPYVESMYEECLSPRCTEK-----CRNRQIGNLTKAEEYEALT---GFYVSIAGWSY----------GTPPCDDACDAQDLDLLKANVAEYGPASICVNAESWGLYVEGVLMTEACGSYAYDSLDHCVNIVGYNDNAPE-PYFVVRNSWSTLWGMDGHIRLSSRNNTCGLANEVTFVSI 172
            A AP VE   ++  S  CT       C     G+ T A EY A     G     A W Y            P C   CD  D D L A + E  P S+C+NA +W  Y  GVL   ACG +  D +DHCV +VGYN   PE  Y++VRNSWST WG DG+I LS   N CG+ANE T   +
Sbjct:   53 AGAPQVELSTQQVAS--CTADPQLMCCDGCAGGDPTAAYEYLAWASRKGGLAPDAWWPYEQGLTPDEVCEAPACTKTCDKDDTDQLAARL-EASPLSVCLNAGAWDDYTGGVLSEAACGGHGADDVDHCVQLVGYNKTEPENSYWIVRNSWSTSWGEDGYIYLSMDGNACGVANEATLAVV 230          
BLAST of NO04G04560 vs. NCBI_GenBank
Match: BAK00754.1 (predicted protein [Hordeum vulgare subsp. vulgare])

HSP 1 Score: 121.3 bits (303), Expect = 3.300e-24
Identity = 51/117 (43.59%), Postives = 72/117 (61.54%), Query Frame = 0
Query:   55 IAGWSYGTPPCDDACDAQDLDLLKANVAEYGPASICVNAESWGLYVEGVLMTEACGSYAYDSLDHCVNIVGYNDNAPEPYFVVRNSWSTLWGMDGHIRLSSRNNTCGLANEVTFVSI 172
            I+G+ Y  P C D+C  QD + +   + E  P S+CV+AE W  Y  G++  + C S  +  LDHCV  VGY+    +PY++VRNSW+T WG DG IRL+   NTCG+ +  T+V I
Sbjct:  226 ISGFGYAIPTCSDSCTNQDENSMAQYMQENSPLSVCVDAEPWQFYSSGIMTVDQCPS-DFSGLDHCVQAVGYDATGSQPYWIVRNSWNTNWGEDGFIRLALGTNTCGIGDVATYVKI 341          
BLAST of NO04G04560 vs. NCBI_GenBank
Match: XP_009032801.1 (hypothetical protein AURANDRAFT_18666 [Aureococcus anophagefferens] >EGB13210.1 hypothetical protein AURANDRAFT_18666 [Aureococcus anophagefferens])

HSP 1 Score: 118.6 bits (296), Expect = 2.200e-23
Identity = 57/147 (38.78%), Postives = 81/147 (55.10%), Query Frame = 0
Query:   37 GNLTKAEEYEALTGFYVSIAGWSYGTPPCDDA-CDAQDLDLLKANVAEYGPASICVNAESWGLYVEGVLMTEACGSYAYDSLDHCVNIVGYNDNAPEP-----------YFVVRNSWSTLWGMDGHIRLSSRNNTCGLANEVTFVSI 172
            GN  + +++E   G    +  +SY  P C    C+ QD D + A +A +GPASICVNA +W  Y +GV+    CGS+A ++LDHCV +VGY     +             + VRNSW T WG  G+IR+    N CG+AN+ TF  +
Sbjct:  202 GNTGRCKKFETAGG---DVESFSYVVPECKKGKCNDQDEDKMAAALASHGPASICVNAGAWQTYTKGVMTNLQCGSHAANALDHCVQVVGYTGYTGDAKACGKGLKDKCVWNVRNSWGTSWGYQGYIRVQMGKNACGIANDATFAKV 345          
BLAST of NO04G04560 vs. NCBI_GenBank
Match: XP_009037507.1 (hypothetical protein AURANDRAFT_5846, partial [Aureococcus anophagefferens] >EGB07772.1 hypothetical protein AURANDRAFT_5846, partial [Aureococcus anophagefferens])

HSP 1 Score: 109.0 bits (271), Expect = 1.700e-20
Identity = 63/161 (39.13%), Postives = 80/161 (49.69%), Query Frame = 0
Query:    5 GLVSAAMAPYVESMY--EECLSPRCTEKCRNRQIGNLTKAEEYEALTGFYVSIAGWSYGTPPCDDACDAQDLDLLK-ANVAEYGPASICVNAESWGLYVEGVLMTEACGSYAYDSLDHCVNIVGYNDNAPEPYFVVRNSWSTLWGMDGHIRLSSRNNTCGL 163
            GL  AA  PY +++   EECL P CT  C                                      D  +LDL + A   +  PA++CVNA +W  Y  GVL  +AC S AY  +DHCV +VGY+    EPY++VRNSWST WG DG+IRL    NTCG+
Sbjct:   85 GLSPAAYWPYTQALTPDEECLGPFCTNAC------------------------------------DMDLSELDLGELAKTIQATPAAVCVNAGAWDDYTGGVLRYDAC-SGAYADIDHCVQLVGYDATGEEPYWIVRNSWSTSWGEDGYIRLQMDANTCGV 208          
BLAST of NO04G04560 vs. NCBI_GenBank
Match: XP_013762925.1 (cruzipain [Thecamonas trahens ATCC 50062] >KNC45942.1 cruzipain [Thecamonas trahens ATCC 50062])

HSP 1 Score: 105.5 bits (262), Expect = 1.900e-19
Identity = 52/117 (44.44%), Postives = 68/117 (58.12%), Query Frame = 0
Query:   55 IAGWSYGTPPCDDACDAQDLDLLKANVAEYGPASICVNAESWGLYVEGVLMTEACGSYAYDSLDHCVNIVGYNDNAPEPYFVVRNSWSTLWGMDGHIRLSSRNNTCGLANEVTFVSI 172
            I G++Y T P       ++   L AN+   GP SICV+A SW  Y  G+L      S+    LDHCV I G+  +  E Y+ VRNSW+T WGM G+I+L    NTCGLA+E T V+I
Sbjct:  222 IMGYNYATSP-----STKNETQLAANLMSTGPVSICVDASSWQTYTSGIL------SHCGKQLDHCVQITGWGTSGSEMYWWVRNSWATSWGMSGYIQLKFGQNTCGLADEATIVTI 327          
BLAST of NO04G04560 vs. NCBI_GenBank
Match: XP_004363040.1 (hypothetical protein DFA_03437 [Cavenderia fasciculata] >EGG25189.1 hypothetical protein DFA_03437 [Cavenderia fasciculata])

HSP 1 Score: 104.0 bits (258), Expect = 5.500e-19
Identity = 49/100 (49.00%), Postives = 64/100 (64.00%), Query Frame = 0
Query:   77 LKANVAEYGPASICVNAESWGLYVEGVLMTEACGSYAYDSLDHCVNIVGYNDNAPE--PYFVVRNSWSTLWGMDGHIRLSSRNNTCGLANEVTFVSIAPE 175
            L+  +A  GP SICVNAE W  Y  G+       S   D LDHCV IVGY+ +A    PYF+VRNSW T WG+ G+I + + +N CG+ NEVT+VS+ P+
Sbjct:  236 LREAMAARGPLSICVNAEPWMSYQSGIF-----SSTCSDDLDHCVQIVGYDTDATSKTPYFIVRNSWGTDWGLLGYIYIQAGSNLCGITNEVTYVSVHPD 330          
BLAST of NO04G04560 vs. NCBI_GenBank
Match: OLP78299.1 (Serine/threonine-protein kinasePKR2 [Symbiodinium microadriaticum])

HSP 1 Score: 102.1 bits (253), Expect = 2.100e-18
Identity = 52/136 (38.24%), Postives = 71/136 (52.21%), Query Frame = 0
Query:   45 YEALTGFYVSIAGWSYGTPPC-DDACDAQDLDLLKANVAEYGPASICVNAESWGLYVEGVLMTEACGSYAYDSLDHCVNIVGYNDNAPEPYFVVRNSWSTLWGMDGHIRLSS-RNNTCGLANEVTFVSIAPEEEEE 179
            Y  L+G Y ++ G+SY   PC + +C+ Q                  VNA  W  Y  GVL   ACG       DHCV  VG+N  AP+PY++VRNSW++ WGM G+I L     NTCG+A++ T   +  +  EE
Sbjct: 1322 YMQLSGGYAAVTGYSYAVKPCTEGSCENQ------------------VNAGVWNDYTGGVLSAAACGPMGAAYQDHCVMAVGFNATAPKPYWIVRNSWASTWGMQGYIYLEMVAKNTCGVADDATIPEVKVDLSEE 1439          
The following BLAST results are available for this feature:
BLAST of NO04G04560 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_009032695.15.500e-4349.14hypothetical protein AURANDRAFT_19240 [Aureococcus... [more]
KOO22621.17.600e-2940.24cysteine proteinase [Chrysochromulina sp. CCMP291][more]
OLQ02337.19.300e-2744.20Digestive cysteine proteinase 2 [Symbiodinium micr... [more]
XP_009040822.15.100e-2540.88hypothetical protein AURANDRAFT_5922, partial [Aur... [more]
BAK00754.13.300e-2443.59predicted protein [Hordeum vulgare subsp. vulgare][more]
XP_009032801.12.200e-2338.78hypothetical protein AURANDRAFT_18666 [Aureococcus... [more]
XP_009037507.11.700e-2039.13hypothetical protein AURANDRAFT_5846, partial [Aur... [more]
XP_013762925.11.900e-1944.44cruzipain [Thecamonas trahens ATCC 50062] >KNC4594... [more]
XP_004363040.15.500e-1949.00hypothetical protein DFA_03437 [Cavenderia fascicu... [more]
OLP78299.12.100e-1838.24Serine/threonine-protein kinasePKR2 [Symbiodinium ... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL082nonsL082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL078nonsL078Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR108ngnoR108Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G04560.1NO04G04560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G04560.1NO04G04560.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G04560 ID=NO04G04560|Name=NO04G04560|organism=Nannochloropsis oceanica|type=gene|length=1346bp
ATGCAGACCCCGGGGCTGGTGAGCGCCGCCATGGCCCCTTATGTCGAGAG
CATGTACGAGGAGTGTCTGTCGCCGCGATGCACGGAAAAATGCCGCAACC
GGCAGATTGGGAACCTGACCAAGGCGGAGGAGTACGAGGCATTGACTGgt
acgtacgtacgtacgtgtgtacctggaatgtggatttgtatgtgggtggt
aatcaatggcgtgggtgtttgtcgtactcgtgtgtatgtgggtatgtgtg
tgtatgtaaaggtgtgtgggaatgggttagagatgaaggaaggaaagacg
ggcatgccattgtcccacgtgaagactttccccccttattcatccccccc
ccctccctccctccctccacctacatttctcgactccgcacacatacttt
ccctctgtccctcccactcgtcgttctccaattcccttccacaacactca
agagtccctccctcccgccctcccccctccttccctagGATTCTACGTCT
CTATCGCCGGCTGGTCCTACGGCACTCCGCCCTGCGACGACGCCTGCGAC
GCGCAAGACCTTGACCTCTTGAAGGCGAATGTGGCGGAATATGGGCCCGC
CTCCATATGTGTCAACGCCGAGAGCTGGGGGTTGTACGTCGAGgtacgtc
gtctcccgccctcctgccctccctccctccctccctccccccccctcttt
ctttcttcatcccttcctcctcccctctctttctcccttcttccctccct
cctccccattattcttctgcagggtgtgctgatgaccgaggtctgcggag
gccacggctacaacttatctctccctccctccctcccttcctctttcccg
ctctccccctcttagGGTGTACTAATGACGGAGGCTTGCGGGAGCTACGC
CTACGATTCTCTCGATCACTGCGTCAATATTGTGGGATACAATGACAACG
CACCCGAGCCGTATTTCGTGgtcagtcctcagccctccccccctccccca
ttatctccttgagcattctatctccttgatcactgatgtctgaatggcgc
tcgaccacacccctccctcaatcccttctccctccttccccttctctccc
cctccctccctcctcccctccttcgccccctccctccctccctccttcgc
cccctcccagGTTCGTAATTCGTGGTCAACCTTGTGGGGTATGGATGGCC
ATATCCGCCTGTCATCGAGGAACAACACATGCGGCTTGGCCAACGAGGTG
ACGTTTGTCTCGATCGCACCGGAGGAGGAGGAGGAGGGGGGGAGAATGAG
GGAGGGGGGCGGGGATGGAGACAGGGAGGGAAGAGGCGATAACTGA
back to top

protein sequence of NO04G04560.1

>NO04G04560.1-protein ID=NO04G04560.1-protein|Name=NO04G04560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=198bp
MQTPGLVSAAMAPYVESMYEECLSPRCTEKCRNRQIGNLTKAEEYEALTG
FYVSIAGWSYGTPPCDDACDAQDLDLLKANVAEYGPASICVNAESWGLYV
EGVLMTEACGSYAYDSLDHCVNIVGYNDNAPEPYFVVRNSWSTLWGMDGH
IRLSSRNNTCGLANEVTFVSIAPEEEEEGGRMREGGGDGDREGRGDN*
back to top
Synonyms
Publications