NO04G04510.1, NO04G04510.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G04510.1
Unique NameNO04G04510.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length855
Alignment locationchr4:1227210..1228064 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1227210..1228064 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G04510.1 vs.
Match: EWM28838.1 (Trimeric LpxA [Nannochloropsis gaditana])

HSP 1 Score: 465.3 bits (1196), Expect = 1.400e-127
Identity = 238/274 (86.86%), Postives = 254/274 (92.70%), Query Frame = 0 
Query:    1 MSASVVSALGAAARAAGRAFENAGKLLEVTPYVEHLAPSTKVLSHAGKSPAIHETVFVAPSASIIGHVQVGKGSSVWYGATLRGDVHSITVGEQTTIGDRAIVHVAKLRGDAPTKIGSRVNIGARAVIHACTLEDESTVGAGAQVLDKAVVKTHAALAPGAVLTPGKTVPSGQLWAGVPAKFVRELTAEEIANIKREAVASFELATVHKAETTKDYLQVMEDEAAWKDKQQRSPDYWPRLKGDAIRDPAEIPGFGVPGRIFNHPLTTPLPEGSD 275
            M+  ++SA GAAARAAGRAFENAGKLLEV PYVEHLAPSTKVLS  GK+PAIHET FVAPSASIIG+VQVGKG+SVWYGATLRGDV SITVGEQTTIGDRA+VHVAKL+GDAPTKIG+RV +G RAVIHACTLEDESTVGAGAQVLDKAVVK+HAALAPGAVLTPGKTVPSG LWAGVPAKFVRELTAEEIANIKREAVASFELATVHKAET+KDY+QV  DE AW DK+QRSP+YWPRLK    +DPAEIPGFGVPGRIFNHPLT PLPEGSD
Sbjct:    1 MTGPILSAFGAAARAAGRAFENAGKLLEVAPYVEHLAPSTKVLSFGGKAPAIHETAFVAPSASIIGNVQVGKGASVWYGATLRGDVQSITVGEQTTIGDRAVVHVAKLKGDAPTKIGNRVTVGPRAVIHACTLEDESTVGAGAQVLDKAVVKSHAALAPGAVLTPGKTVPSGHLWAGVPAKFVRELTAEEIANIKREAVASFELATVHKAETSKDYVQVEADEEAWIDKKQRSPNYWPRLKDP--KDPAEIPGFGVPGRIFNHPLTVPLPEGSD 272
The following BLAST results are available for this feature:
BLAST of NO04G04510.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28838.11.400e-12786.86Trimeric LpxA [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G04510NO04G04510Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G04510.1NO04G04510.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G04510.1.cds1NO04G04510.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G04510.1 ID=NO04G04510.1|Name=NO04G04510.1|organism=Nannochloropsis oceanica|type=mRNA|length=855bp
ATGTCGGCTTCCGTCGTCAGTGCCCTCGGGGCTGCAGCCCGAGCCGCGGG
GCGGGCTTTTGAGAACGCAGGCAAGCTTTTAGAAGTCACCCCTTATGTCG
AGCACCTGGCCCCGTCGACCAAGGTTCTGTCGCATGCTGGCAAGAGCCCC
GCAATTCACGAGACCGTTTTTGTCGCTCCATCCGCCAGCATAATCGGTCA
TGTCCAAGTCGGCAAGGGTTCCTCGGTGTGGTACGGCGCCACCTTGCGTG
GCGATGTCCACAGCATCACAGTCGGAGAACAAACGACGATCGGCGACCGC
GCAATCGTGCACGTAGCCAAGCTTCGTGGTGATGCCCCCACCAAAATTGG
GAGCCGTGTCAATATTGGCGCTCGCGCTGTCATCCATGCCTGTACGCTCG
AGGACGAGTCTACCGTGGGAGCCGGGGCGCAGGTTCTGGATAAGGCTGTA
GTCAAAACGCACGCGGCCTTGGCGCCTGGTGCAGTGCTTACCCCTGGGAA
GACTGTGCCATCGGGGCAGCTTTGGGCGGGAGTACCTGCCAAATTTGTGC
GTGAATTGACGGCGGAGGAGATTGCGAATATCAAGCGGGAAGCCGTAGCA
TCTTTCGAGCTGGCGACAGTGCACAAAGCAGAGACGACCAAGGATTATTT
GCAGGTGATGGAGGACGAGGCGGCCTGGAAGGACAAACAGCAACGATCAC
CTGATTACTGGCCTCGGCTGAAGGGGGATGCGATCCGTGACCCGGCAGAG
ATTCCGGGATTTGGTGTGCCTGGGCGTATTTTTAATCATCCTCTGACGAC
GCCCTTGCCGGAAGGATCGGACGGTCGGCCACAGGGAGGGGAGAGGGAAA
AGTAA
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protein sequence of NO04G04510.1

>NO04G04510.1-protein ID=NO04G04510.1-protein|Name=NO04G04510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=285bp
MSASVVSALGAAARAAGRAFENAGKLLEVTPYVEHLAPSTKVLSHAGKSP
AIHETVFVAPSASIIGHVQVGKGSSVWYGATLRGDVHSITVGEQTTIGDR
AIVHVAKLRGDAPTKIGSRVNIGARAVIHACTLEDESTVGAGAQVLDKAV
VKTHAALAPGAVLTPGKTVPSGQLWAGVPAKFVRELTAEEIANIKREAVA
SFELATVHKAETTKDYLQVMEDEAAWKDKQQRSPDYWPRLKGDAIRDPAE
IPGFGVPGRIFNHPLTTPLPEGSDGRPQGGEREK*
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mRNA from alignment at chr4:1227210..1228064-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G04510.1 ID=NO04G04510.1|Name=NO04G04510.1|organism=Nannochloropsis oceanica|type=mRNA|length=855bp|location=Sequence derived from alignment at chr4:1227210..1228064- (Nannochloropsis oceanica)
ATGTCGGCTTCCGTCGTCAGTGCCCTCGGGGCTGCAGCCCGAGCCGCGGG
GCGGGCTTTTGAGAACGCAGGCAAGCTTTTAGAAGTCACCCCTTATGTCG
AGCACCTGGCCCCGTCGACCAAGGTTCTGTCGCATGCTGGCAAGAGCCCC
GCAATTCACGAGACCGTTTTTGTCGCTCCATCCGCCAGCATAATCGGTCA
TGTCCAAGTCGGCAAGGGTTCCTCGGTGTGGTACGGCGCCACCTTGCGTG
GCGATGTCCACAGCATCACAGTCGGAGAACAAACGACGATCGGCGACCGC
GCAATCGTGCACGTAGCCAAGCTTCGTGGTGATGCCCCCACCAAAATTGG
GAGCCGTGTCAATATTGGCGCTCGCGCTGTCATCCATGCCTGTACGCTCG
AGGACGAGTCTACCGTGGGAGCCGGGGCGCAGGTTCTGGATAAGGCTGTA
GTCAAAACGCACGCGGCCTTGGCGCCTGGTGCAGTGCTTACCCCTGGGAA
GACTGTGCCATCGGGGCAGCTTTGGGCGGGAGTACCTGCCAAATTTGTGC
GTGAATTGACGGCGGAGGAGATTGCGAATATCAAGCGGGAAGCCGTAGCA
TCTTTCGAGCTGGCGACAGTGCACAAAGCAGAGACGACCAAGGATTATTT
GCAGGTGATGGAGGACGAGGCGGCCTGGAAGGACAAACAGCAACGATCAC
CTGATTACTGGCCTCGGCTGAAGGGGGATGCGATCCGTGACCCGGCAGAG
ATTCCGGGATTTGGTGTGCCTGGGCGTATTTTTAATCATCCTCTGACGAC
GCCCTTGCCGGAAGGATCGGACGGTCGGCCACAGGGAGGGGAGAGGGAAA
AGTAA
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Coding sequence (CDS) from alignment at chr4:1227210..1228064-

>NO04G04510.1 ID=NO04G04510.1|Name=NO04G04510.1|organism=Nannochloropsis oceanica|type=CDS|length=855bp|location=Sequence derived from alignment at chr4:1227210..1228064- (Nannochloropsis oceanica)
ATGTCGGCTTCCGTCGTCAGTGCCCTCGGGGCTGCAGCCCGAGCCGCGGG
GCGGGCTTTTGAGAACGCAGGCAAGCTTTTAGAAGTCACCCCTTATGTCG
AGCACCTGGCCCCGTCGACCAAGGTTCTGTCGCATGCTGGCAAGAGCCCC
GCAATTCACGAGACCGTTTTTGTCGCTCCATCCGCCAGCATAATCGGTCA
TGTCCAAGTCGGCAAGGGTTCCTCGGTGTGGTACGGCGCCACCTTGCGTG
GCGATGTCCACAGCATCACAGTCGGAGAACAAACGACGATCGGCGACCGC
GCAATCGTGCACGTAGCCAAGCTTCGTGGTGATGCCCCCACCAAAATTGG
GAGCCGTGTCAATATTGGCGCTCGCGCTGTCATCCATGCCTGTACGCTCG
AGGACGAGTCTACCGTGGGAGCCGGGGCGCAGGTTCTGGATAAGGCTGTA
GTCAAAACGCACGCGGCCTTGGCGCCTGGTGCAGTGCTTACCCCTGGGAA
GACTGTGCCATCGGGGCAGCTTTGGGCGGGAGTACCTGCCAAATTTGTGC
GTGAATTGACGGCGGAGGAGATTGCGAATATCAAGCGGGAAGCCGTAGCA
TCTTTCGAGCTGGCGACAGTGCACAAAGCAGAGACGACCAAGGATTATTT
GCAGGTGATGGAGGACGAGGCGGCCTGGAAGGACAAACAGCAACGATCAC
CTGATTACTGGCCTCGGCTGAAGGGGGATGCGATCCGTGACCCGGCAGAG
ATTCCGGGATTTGGTGTGCCTGGGCGTATTTTTAATCATCCTCTGACGAC
GCCCTTGCCGGAAGGATCGGACGGTCGGCCACAGGGAGGGGAGAGGGAAA
AGTAA
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Synonyms
Publications