NO04G04390.1, NO04G04390.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G04390.1
Unique NameNO04G04390.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1200
Alignment locationchr4:1186367..1187900 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1186367..1187900 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO04G04390.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G04390NO04G04390Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G04390.1NO04G04390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G04390.1.cds1NO04G04390.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04390.1.cds2NO04G04390.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G04390.1.cds3NO04G04390.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G04390.1 ID=NO04G04390.1|Name=NO04G04390.1|organism=Nannochloropsis oceanica|type=mRNA|length=1200bp
ACAGCTCTACAGGCACAGACGCAAGCTCAATCGTAACATTCTCATCCTCT
TGCTGGTACAGTCGTCCCCGCATTCCGGCCCCTTTTCGGCTGTCATATTG
CGTTCACACCACCCTTGTCCCTTTCAAGACATGGCCCGCACTATTCTGCC
GCCCTCAACCCTGTCGTGGGCGACCCTCGCACAGCATCCACGCGTGCACG
AGATTCTGAGCTCCATCCTTACGGGTGTGGCCCTGGGACTAGTCGTCCTC
CTTGTCCTTTCAGCGTATCCCGGCGACTCCTATGATTTCCCCAAGCCCGA
TGGAAACCGAGCAAAACGACAGTCTGGGATGGTCGGAAAATGTAAAGAAG
AGGACCTGCAGGAGGAGGACTACGGGGACGAGGTGGAGGTGAGAGTGGCA
GACGGCTGCGGCAGCACAATGGACAGCAGCAGCAGGACAGGCAGCAGGAC
AAGCAGCAGTAGCTCTAGCAGCAGCGGCAGCAGTAGCAGCAGCAGCAGCA
GCAGCAGCGAGAGTATTAGCAGCATGCCAATCACGACCGCGACGTTCACG
ACGACCGTGCGGCATCGACGCAGCCAGACTCTCAGCAAAGACAAGTCGAT
CAGCACCCGAGCACGGGACGACAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCGACAATAGACAGACTGGCGACTATGCCGAGGCCGAG
GCTCTGCACCGCCTCCTCGTCCACGAAGATCGTTTGTGGCAGCGGCTGCA
GAAATTGCCTGTGGCCCTTCTTGGGGCGTTGGGTTTGTCGGAGGATGGAG
TACGATTGGCGGTCCGGCGCTCGGGCGGGCTGACGGCGGAAAATAGGATG
AGAAGCAGCTCGAGTAAGAAAATACTGGCGTGCGAGTAGACCTTGTCGTT
AACATGATGGCTTCCATTGCTCCCTCCTTTATTGGCAAACGAGGAGTAAG
TGCACAGTCGACCCGAGTTCTCATCAGCTAATTTTTCGCAGAGGCGATGA
TTTTGGGAACTTATATGTCTGAAAAAAAGATAGTTATGTGTAGATCATGG
TGATGTTGTTTGGTGTGCAGAGGAAGGAGGAAAGGAGAGAGGAAGGGTGG
TAGTGTAAAGTGGAAGTGGTGGGGGCTGATGTACATGGTAGGTGTAGAAA
ATAAGAAGAAAGCAAAAGAAGAAAAATCAGTTTGTTGGTTTAGTGGATAT
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protein sequence of NO04G04390.1

>NO04G04390.1-protein ID=NO04G04390.1-protein|Name=NO04G04390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=253bp
MARTILPPSTLSWATLAQHPRVHEILSSILTGVALGLVVLLVLSAYPGDS
YDFPKPDGNRAKRQSGMVGKCKEEDLQEEDYGDEVEVRVADGCGSTMDSS
SRTGSRTSSSSSSSSGSSSSSSSSSSESISSMPITTATFTTTVRHRRSQT
LSKDKSISTRARDDSSSSSSSSSSSSSSDNRQTGDYAEAEALHRLLVHED
RLWQRLQKLPVALLGALGLSEDGVRLAVRRSGGLTAENRMRSSSSKKILA
CE*
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mRNA from alignment at chr4:1186367..1187900-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G04390.1 ID=NO04G04390.1|Name=NO04G04390.1|organism=Nannochloropsis oceanica|type=mRNA|length=1534bp|location=Sequence derived from alignment at chr4:1186367..1187900- (Nannochloropsis oceanica)
ACAGCTCTACAGGCACAGACGCAAGCTCAATCGTAACATTCTCATCCTCT
TGCTGGTACAGTCGTCCCCGCATTCCGGCCCCTTTTCGGCTGTCATATTG
CGTTCACACCACCCTTGTCCCTTTCAAGACATGGCCCGCACTATTCTGCC
GCCCTCAACCCTGTCGTGGGCGACCCTCGCACAGCATCCACGCGTGCACG
AGATTCTGAGCTCCATCCTTGTACGTATGAGAGAATGCTGGCCGGCTCTT
CCACTTCCCTTTTCCTCTCTTCCACTTACCATCCAATCCACCATTTAACT
TCCCCTTTTCTGCATTCGTACACGACAGACGGGTGTGGCCCTGGGACTAG
TCGTCCTCCTTGTCCTTTCAGCGTATCCCGGCGACTCCTATGATTTCCCC
AAGCCCGATGGAAACCGAGCAAAACGACAGTCTGGGATGGTCGGAAAATG
TAAAGAAGAGGACCTGCAGGAGGAGGACTACGGGGACGAGGTGGAGGTGA
GAGTGGCAGACGGCTGCGGCAGCACAATGGACAGCAGCAGCAGGACAGGC
AGCAGGACAAGCAGCAGTAGCTCTAGCAGCAGCGGCAGCAGTAGCAGCAG
CAGCAGCAGCAGCAGCGAGAGTATTAGCAGCATGCCAATCACGACCGCGA
CGTTCACGACGACCGTGCGGCATCGACGCAGCCAGACTCTCAGCAAAGAC
AAGTCGATCAGCACCCGAGCACGGGACGACAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCGACAATAGACAGACTGGCGACTATGCCG
AGGCCGAGGCTCTGCACCGCCTCCTCGTCCACGAAGATCGTTTGTGGCAG
CGGCTGCAGAAATTGCCTGTGGCCCTTCTTGGGGCGTTGGGTTTGTCGGA
GGATGGAGTACGATTGGCGGTCCGGCGCTCGGGCGGGCTGACGGCGGAAA
ATAGGATGAGAAGCAGCTCGAGTAAGAAAATACTGGTATAAATATTACAG
GAAGGAGCTATATAGTATGCATCTACTTTGTCACTCCTTTTCCCTTGTGT
TTATGCATTCCACAAAACACATGTTGACGACGGCCGCTTTTTATGGGCAT
GTCGTCTTTGTCCTTCCCTGACACTGCATCTTTCTCTGCTTACATAGGTT
CGACCCCCTCATCTATCCTTGTCCTTTGTCCTATCCCCATTACCATCTCC
TCCAATGACAGGCGTGCGAGTAGACCTTGTCGTTAACATGATGGCTTCCA
TTGCTCCCTCCTTTATTGGCAAACGAGGAGTAAGTGCACAGTCGACCCGA
GTTCTCATCAGCTAATTTTTCGCAGAGGCGATGATTTTGGGAACTTATAT
GTCTGAAAAAAAGATAGTTATGTGTAGATCATGGTGATGTTGTTTGGTGT
GCAGAGGAAGGAGGAAAGGAGAGAGGAAGGGTGGTAGTGTAAAGTGGAAG
TGGTGGGGGCTGATGTACATGGTAGGTGTAGAAAATAAGAAGAAAGCAAA
AGAAGAAAAATCAGTTTGTTGGTTTAGTGGATAT
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Coding sequence (CDS) from alignment at chr4:1186367..1187900-

>NO04G04390.1 ID=NO04G04390.1|Name=NO04G04390.1|organism=Nannochloropsis oceanica|type=CDS|length=759bp|location=Sequence derived from alignment at chr4:1186367..1187900- (Nannochloropsis oceanica)
ATGGCCCGCACTATTCTGCCGCCCTCAACCCTGTCGTGGGCGACCCTCGC
ACAGCATCCACGCGTGCACGAGATTCTGAGCTCCATCCTTACGGGTGTGG
CCCTGGGACTAGTCGTCCTCCTTGTCCTTTCAGCGTATCCCGGCGACTCC
TATGATTTCCCCAAGCCCGATGGAAACCGAGCAAAACGACAGTCTGGGAT
GGTCGGAAAATGTAAAGAAGAGGACCTGCAGGAGGAGGACTACGGGGACG
AGGTGGAGGTGAGAGTGGCAGACGGCTGCGGCAGCACAATGGACAGCAGC
AGCAGGACAGGCAGCAGGACAAGCAGCAGTAGCTCTAGCAGCAGCGGCAG
CAGTAGCAGCAGCAGCAGCAGCAGCAGCGAGAGTATTAGCAGCATGCCAA
TCACGACCGCGACGTTCACGACGACCGTGCGGCATCGACGCAGCCAGACT
CTCAGCAAAGACAAGTCGATCAGCACCCGAGCACGGGACGACAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGACAATAGACAGACTG
GCGACTATGCCGAGGCCGAGGCTCTGCACCGCCTCCTCGTCCACGAAGAT
CGTTTGTGGCAGCGGCTGCAGAAATTGCCTGTGGCCCTTCTTGGGGCGTT
GGGTTTGTCGGAGGATGGAGTACGATTGGCGGTCCGGCGCTCGGGCGGGC
TGACGGCGGAAAATAGGATGAGAAGCAGCTCGAGTAAGAAAATACTGGCG
TGCGAGTAG
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Synonyms
Publications