NO04G04390, NO04G04390 (gene) Nannochloropsis oceanica

Overview
NameNO04G04390
Unique NameNO04G04390
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1534
Alignment locationchr4:1186367..1187900 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1186367..1187900 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO04G04390 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL082nonsL082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G04390.2NO04G04390.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO04G04390.1NO04G04390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100002g167gene1777Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G04390.2NO04G04390.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO04G04390.1NO04G04390.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G04390 ID=NO04G04390|Name=NO04G04390|organism=Nannochloropsis oceanica|type=gene|length=1534bp
ACAGCTCTACAGGCACAGACGCAAGCTCAATCGTAACATTCTCATCCTCT
TGCTGGTACAGTCGTCCCCGCATTCCGGCCCCTTTTCGGCTGTCATATTG
CGTTCACACCACCCTTGTCCCTTTCAAGACATGGCCCGCACTATTCTGCC
GCCCTCAACCCTGTCGTGGGCGACCCTCGCACAGCATCCACGCGTGCACG
AGATTCTGAGCTCCATCCTTgtacgtatgagagaatgctggccggctctt
ccacttcccttttcctctcttccacttaccatccaatccaccatttaact
tccccttttctgcattcgtacacgacagACGGGTGTGGCCCTGGGACTAG
TCGTCCTCCTTGTCCTTTCAGCGTATCCCGGCGACTCCTATGATTTCCCC
AAGCCCGATGGAAACCGAGCAAAACGACAGTCTGGGATGGTCGGAAAATG
TAAAGAAGAGGACCTGCAGGAGGAGGACTACGGGGACGAGGTGGAGGTGA
GAGTGGCAGACGGCTGCGGCAGCACAATGGACAGCAGCAGCAGGACAGGC
AGCAGGACAAGCAGCAGTAGCTCTAGCAGCAGCGGCAGCAGTAGCAGCAG
CAGCAGCAGCAGCAGCGAGAGTATTAGCAGCATGCCAATCACGACCGCGA
CGTTCACGACGACCGTGCGGCATCGACGCAGCCAGACTCTCAGCAAAGAC
AAGTCGATCAGCACCCGAGCACGGGACGACAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCGACAATAGACAGACTGGCGACTATGCCG
AGGCCGAGGCTCTGCACCGCCTCCTCGTCCACGAAGATCGTTTGTGGCAG
CGGCTGCAGAAATTGCCTGTGGCCCTTCTTGGGGCGTTGGGTTTGTCGGA
GGATGGAGTACGATTGGCGGTCCGGCGCTCGGGCGGGCTGACGGCGGAAA
ATAGGATGAGAAGCAGCTCGAgtaagaaaatactggtataaatattacag
gaaggagctatatagtatgcatctactttgtcactccttttcccttgtgt
ttatgcattccacaaaacacatgttgacgacggccgctttttatgggcat
gtcgtctttgtccttccctgacactgcatctttctctgcttacataggtt
cgaccccctcatctatccttgtcctttgtcctatccccattaccatctcc
tccaatgacagGCGTGCGAGTAGACCTTGTCGTTAACATGATGGCTTCCA
TTGCTCCCTCCTTTATTGGCAAACGAGGAGTAAGTGCACAGTCGACCCGA
GTTCTCATCAGCTAATTTTTCGCAGAGGCGATGATTTTGGGAACTTATAT
GTCTGAAAAAAAGATAGTTATGTGTAGATCATGGTGATGTTGTTTGGTGT
GCAGAGGAAGGAGGAAAGGAGAGAGGAAGGGTGGTAGTGTAAAGTGGAAG
TGGTGGGGGCTGATGTACATGGTAGGTGTAGAAAATAAGAAGAAAGCAAA
AGAAGAAAAATCAGTTTGTTGGTTTAGTGGATAT
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protein sequence of NO04G04390.2

>NO04G04390.2-protein ID=NO04G04390.2-protein|Name=NO04G04390.2|organism=Nannochloropsis oceanica|type=polypeptide|length=279bp
MARTILPPSTLSWATLAQHPRVHEILSSILTGVALGLVVLLVLSAYPGDS
YDFPKPDGNRAKRQSGMVGKCKEEDLQEEDYGDEVEVRVADGCGSTMDSS
SRTGSRTSSSSSSSSGSSSSSSSSSSESISSMPITTATFTTTVRHRRSQT
LSKDKSISTRARDDSSSSSSSSSSSSSSDNRQTGDYAEAEALHRLLVHED
RLWQRLQKLPVALLGALGLSEDGVRLAVRRSGGLTAENRMRSSSSVRVDL
VVNMMASIAPSFIGKRGVSAQSTRVLIS*
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protein sequence of NO04G04390.1

>NO04G04390.1-protein ID=NO04G04390.1-protein|Name=NO04G04390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=253bp
MARTILPPSTLSWATLAQHPRVHEILSSILTGVALGLVVLLVLSAYPGDS
YDFPKPDGNRAKRQSGMVGKCKEEDLQEEDYGDEVEVRVADGCGSTMDSS
SRTGSRTSSSSSSSSGSSSSSSSSSSESISSMPITTATFTTTVRHRRSQT
LSKDKSISTRARDDSSSSSSSSSSSSSSDNRQTGDYAEAEALHRLLVHED
RLWQRLQKLPVALLGALGLSEDGVRLAVRRSGGLTAENRMRSSSSKKILA
CE*
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Synonyms
Publications