NO04G04040, NO04G04040 (gene) Nannochloropsis oceanica

Overview
NameNO04G04040
Unique NameNO04G04040
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1413
Alignment locationchr4:1082079..1083491 +

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Properties
Property NameValue
DescriptionRab5-interacting family protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1082079..1083491 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010742Rab5ip
IPR029008Rab5IP_fam
Homology
BLAST of NO04G04040 vs. NCBI_GenBank
Match: EWM28670.1 (hypothetical protein Naga_100002g134 [Nannochloropsis gaditana])

HSP 1 Score: 98.6 bits (244), Expect = 2.000e-17
Identity = 44/61 (72.13%), Postives = 51/61 (83.61%), Query Frame = 0
Query:   40 LGAMAIFQKALIFRGNWNKETFPEFLDVIYWLRQMLALIIGLVWGRAPSLGGPAIMSFVGL 101
            L A  +F+KALIF+G WNKETFP+FLDVIYW RQ+LAL+IG+VWGRA S GG AIMSF  L
Sbjct:   33 LDAWGVFKKALIFQGQWNKETFPQFLDVIYWFRQVLALVIGVVWGRAASRGGTAIMSFAAL 93          
BLAST of NO04G04040 vs. NCBI_GenBank
Match: XP_004210280.1 (PREDICTED: uncharacterized protein C20orf24 homolog [Hydra vulgaris])

HSP 1 Score: 89.4 bits (220), Expect = 1.200e-14
Identity = 42/109 (38.53%), Postives = 66/109 (60.55%), Query Frame = 0
Query:   43 MAIFQKALIFRGNWNKETFPEFLDVIYWLRQMLALIIGLVWGRAPSLGGPAIMSFVGLELMLPRMYYQKWASVDEDDFDAV-ALLKEGLQSAAGVFFATWVLTYTICHN 151
            +++F+K+L F   W ++   + LDVIYW+RQ+ AL+ G++WG  P  G   I  F+ +   +  +Y  K+  VDEDD+  +  LLKEGL +A  VF   W++ YT  H+
Sbjct:   19 VSVFKKSLSFNAVWQEK--DDLLDVIYWMRQLFALLNGIIWGIIPFQGIIGIAGFLAINCAIVYIYVSKFQKVDEDDYGGIQELLKEGLFNAFAVFLVCWIMAYTGIHS 125          
BLAST of NO04G04040 vs. NCBI_GenBank
Match: OAO15996.1 (hypothetical protein AV274_2312 [Blastocystis sp. ATCC 50177/Nand II] >OAO16711.1 hypothetical protein AV274_1552 [Blastocystis sp. ATCC 50177/Nand II])

HSP 1 Score: 87.0 bits (214), Expect = 6.000e-14
Identity = 36/94 (38.30%), Postives = 60/94 (63.83%), Query Frame = 0
Query:   56 WNKETFPEFLDVIYWLRQMLALIIGLVWGRAPSLGGPAIMSFVGLELMLPRMYYQKWASVDEDDFDAVALLKEGLQSAAGVFFATWVLTYTICH 150
            ++KETFP+FLD+IY+++Q +AL+IG+VWG  P  G   +++ V     +P +Y  ++  V+ +DFD + +L EG      +F  +W+L YT  H
Sbjct:   34 YDKETFPDFLDLIYFVKQFVALVIGIVWGILPFTGAFGLLTGVVASFGIPLLYANRYLRVNTEDFDVMTILSEGAMPTFALFLLSWILCYTTFH 127          
BLAST of NO04G04040 vs. NCBI_GenBank
Match: XP_012894798.1 (uncharacterized protein [Blastocystis hominis] >CBK20750.2 unnamed protein product [Blastocystis hominis])

HSP 1 Score: 85.5 bits (210), Expect = 1.800e-13
Identity = 35/101 (34.65%), Postives = 64/101 (63.37%), Query Frame = 0
Query:   49 ALIFRGNWNKETFPEFLDVIYWLRQMLALIIGLVWGRAPSLGGPAIMSFVGLELMLPRMYYQKWASVDEDDFDAVALLKEGLQSAAGVFFATWVLTYTICH 150
            AL     ++K++FP+FLD+IY+++Q+LAL+ G+VWG  P  G   +++ +   + LP +Y  ++  V+ DDFD + +L+EG      ++   W++TY+  H
Sbjct:   27 ALKKEAEYDKDSFPDFLDIIYFMKQILALVFGIVWGIVPFTGAFGLVTGLVWVIGLPLVYATRYIRVNTDDFDVMTILQEGAMQGVCLYLVAWIVTYSAFH 127          
BLAST of NO04G04040 vs. NCBI_GenBank
Match: XP_013065026.1 (PREDICTED: uncharacterized protein C20orf24 homolog [Biomphalaria glabrata])

HSP 1 Score: 84.7 bits (208), Expect = 3.000e-13
Identity = 39/108 (36.11%), Postives = 65/108 (60.19%), Query Frame = 0
Query:   44 AIFQKALIFRGNWNKETFPEFLDVIYWLRQMLALIIGLVWGRAPSLGGPAIMSFVGLELMLPRMYYQKWASVDEDDFDAVA-LLKEGLQSAAGVFFATWVLTYTICHN 151
            ++F KALI    W  +   EFLDVIYW+RQ+L L++G+VWG  P  G   +  F+ + + +  +YY  +  VDE+++   + +LKEGL ++   F   W++ Y+  H+
Sbjct:   19 SLFSKALIPEYKWQDK--DEFLDVIYWMRQILGLLLGIVWGIIPMKGFIGLALFLLVNVAIVYIYYNSFQKVDEEEYGGTSEILKEGLMTSFSSFLVAWIILYSALHS 124          
BLAST of NO04G04040 vs. NCBI_GenBank
Match: XP_022338192.1 (uncharacterized protein C20orf24 homolog isoform X2 [Crassostrea virginica])

HSP 1 Score: 84.7 bits (208), Expect = 3.000e-13
Identity = 38/104 (36.54%), Postives = 62/104 (59.62%), Query Frame = 0
Query:   54 GNWNKETF----PEFLDVIYWLRQMLALIIGLVWGRAPSLGGPAIMSFVGLELMLPRMYYQKWASVDEDDF-DAVALLKEGLQSAAGVFFATWVLTYTICHNAS 153
            GNW+ ++F     EFLDVIYW+RQ+  L+ GL+WG  P  G   ++ F    L +  +YY  +  +D++++  A  +LKEGL ++   F  TW++ Y+  H +S
Sbjct:    3 GNWDTDSFCELRDEFLDVIYWMRQVFGLVQGLIWGLLPLKGFFGLLLFFVFNLGIIYLYYNSFQKIDDEEYGGASEILKEGLMTSFAAFLVTWIIIYSSLHTSS 106          
BLAST of NO04G04040 vs. NCBI_GenBank
Match: CAX73767.1 (hypotheticial protein [Schistosoma japonicum])

HSP 1 Score: 81.6 bits (200), Expect = 2.500e-12
Identity = 44/114 (38.60%), Postives = 62/114 (54.39%), Query Frame = 0
Query:   40 LGAMAIFQKALIFRGNWNKETFPEFLDVIYWLRQMLALIIGLVWGRAPSLGGPAIMSFVGLELMLPRMYYQKWASVDEDDFDAVA-LLKEGLQSAAGVFFATWVLTYTICHNAS 153
            L +  IF KAL     +N +   +FLD+IYW RQ+ A+IIG+VWG A   G  AI+ F    +     Y   +  VDED++     ++KEGL +A   F  +W+LTY   H  S
Sbjct:   12 LSSYDIFLKALKTESVFNDKN--DFLDIIYWFRQVFAIIIGVVWGLASFTGFLAIVMFFVTNICFVYAYAAMYQRVDEDEYGGYGEIVKEGLMTAFACFMVSWILTYDCAHGIS 123          
BLAST of NO04G04040 vs. NCBI_GenBank
Match: AAX27655.2 (SJCHGC09444 protein, partial [Schistosoma japonicum])

HSP 1 Score: 81.6 bits (200), Expect = 2.500e-12
Identity = 44/114 (38.60%), Postives = 62/114 (54.39%), Query Frame = 0
Query:   40 LGAMAIFQKALIFRGNWNKETFPEFLDVIYWLRQMLALIIGLVWGRAPSLGGPAIMSFVGLELMLPRMYYQKWASVDEDDFDAVA-LLKEGLQSAAGVFFATWVLTYTICHNAS 153
            L +  IF KAL     +N +   +FLD+IYW RQ+ A+IIG+VWG A   G  AI+ F    +     Y   +  VDED++     ++KEGL +A   F  +W+LTY   H  S
Sbjct:   12 LSSYDIFLKALKTESVFNDKN--DFLDIIYWFRQVFAIIIGVVWGLASFTGFLAIVMFFVTNICFVYAYAAMYQRVDEDEYGGYGEIVKEGLMTAFACFMVSWILTYDCAHGIS 123          
BLAST of NO04G04040 vs. NCBI_GenBank
Match: XP_021364439.1 (uncharacterized protein C20orf24 homolog [Mizuhopecten yessoensis])

HSP 1 Score: 81.6 bits (200), Expect = 2.500e-12
Identity = 37/105 (35.24%), Postives = 63/105 (60.00%), Query Frame = 0
Query:   43 MAIFQKALIFRGNWNKETFPEFLDVIYWLRQMLALIIGLVWGRAPSLGGPAIMSFVGLELMLPRMYYQKWASVDEDDFDA-VALLKEGLQSAAGVFFATWVLTYT 147
            MA F KA +    W+ +   EFLDVIYW+RQ++ +++GL+WG  P  G  A++ F  +   +  +YY  +  VD++++     +LKEGL ++   F  TW++ Y+
Sbjct:   25 MATFSKAFVAEAAWDDK--DEFLDVIYWMRQIIGMVLGLIWGLFPLKGIIALVIFFAINCGVIYIYYGIFQKVDDEEYGGPTEILKEGLMTSFSTFVVTWIILYS 127          
BLAST of NO04G04040 vs. NCBI_GenBank
Match: XP_011451238.1 (PREDICTED: uncharacterized protein C20orf24 homolog [Crassostrea gigas] >EKC36866.1 Uncharacterized protein C20orf24-like protein [Crassostrea gigas])

HSP 1 Score: 81.3 bits (199), Expect = 3.300e-12
Identity = 39/111 (35.14%), Postives = 61/111 (54.95%), Query Frame = 0
Query:   43 MAIFQKALIFRGNWNKETFPEFLDVIYWLRQMLALIIGLVWGRAPSLGGPAIMSFVGLELMLPRMYYQKWASVDEDDF-DAVALLKEGLQSAAGVFFATWVLTYTICHNAS 153
            ++   KA      W  E   EFLDVIYW+RQ+  L+ GL+WG  P  G   ++ F  L L +  +YY  +  +D++++  A  +LKEGL ++   F  TW++ Y+  H  S
Sbjct:   21 ISTLSKAFASGSTW--EDKDEFLDVIYWMRQVFGLVQGLIWGLLPLKGFFGLLLFFALNLGIVYLYYNSFQKIDDEEYGGASEILKEGLMTSFAAFLVTWIIIYSSLHTNS 129          
The following BLAST results are available for this feature:
BLAST of NO04G04040 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28670.12.000e-1772.13hypothetical protein Naga_100002g134 [Nannochlorop... [more]
XP_004210280.11.200e-1438.53PREDICTED: uncharacterized protein C20orf24 homolo... [more]
OAO15996.16.000e-1438.30hypothetical protein AV274_2312 [Blastocystis sp. ... [more]
XP_012894798.11.800e-1334.65uncharacterized protein [Blastocystis hominis] >CB... [more]
XP_013065026.13.000e-1336.11PREDICTED: uncharacterized protein C20orf24 homolo... [more]
XP_022338192.13.000e-1336.54uncharacterized protein C20orf24 homolog isoform X... [more]
CAX73767.12.500e-1238.60hypotheticial protein [Schistosoma japonicum][more]
AAX27655.22.500e-1238.60SJCHGC09444 protein, partial [Schistosoma japonicu... [more]
XP_021364439.12.500e-1235.24uncharacterized protein C20orf24 homolog [Mizuhope... [more]
XP_011451238.13.300e-1235.14PREDICTED: uncharacterized protein C20orf24 homolo... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL082nonsL082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009390NSK009390Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G04040.1NO04G04040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579396gene_2186Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100002g134gene1804Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G04040.1NO04G04040.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G04040 ID=NO04G04040|Name=NO04G04040|organism=Nannochloropsis oceanica|type=gene|length=1413bp
AGGGAAAACACTATGTCAGGAGTTGCCAGAAGAAAGATGCCGCAAAGCGG
CGCCATCACTTCGCAGCAGCAAGCCACTCTCGACGCCTCCACCAAGAAGC
AGCAGCAGCAGCAGCAACCTTCAGACGACTTGGGAGCGATGGCAATATTC
CAAAAGGCCCTAATTTTTCGAGGCAATTGGAATAAGgtatgtctgggtgt
gtgcaccgtagaaatgagtcaatggtggcgtgccctcagtcactcaggat
tcacatatccctacttattcctgggcacacagGAGACCTTTCCCGAGTTC
TTGGACGTCATCTACTGGCTCCGACAGATGCTGGCGTTAATCATTGGACT
CGTATGGGGTCGAGCTCCGTCACTGGGAGGGCCTGCGATCATGTCATTTG
TTGGTTTGgtaaaagttgaagaaatgaggggagggagggatgaagggagg
gaaggttgagggcatgtcagcccgtttctcgcttgcgcattatcttgtgc
ttcctcggattgaccgaatgaggctaattctgacgccgtaactctaccaa
agggagtgtcgcacttactttattcctccttctctttctccttccctccg
ttccccctcagGAACTTATGCTTCCTCGAATGTACTACCAAAAATGGGCG
AGTGTGGATGAGGATGATTTTGATGCCGTGGCGCTCCTGAAGGAAGGTTT
ACAATCAGCAGCCGGTGTGTTTTTTGCAACGTGGGTGCTGACCTACACAA
TCTGTCATAATGCGAGTTTTGAGAAGGCGGCGGCAGCGGCCGCAAATGCA
GCAGCTGCAGGTGGCGCAGGGCCTTGAGGAGTGAGAGGGACGAGGATTAG
ATGATAATGCTTTCTTAGGGGGAAGTAGATGGACGGTGGATTTGGGAGAA
AAGAGGAGGAGAGGGAACAAGAGGCTGAGGAAAAGAAGGAAGGGGAAGGA
TGAGGAGGAGGAGGAGGAGGAGGAGGGGGCAGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGAACAAGAGATATGCTGGTGCCCCGCCCCGCTCACACAAG
ACAAAGCAACAGGGTAAGGGTTAGGATTATATAAAAAAAGAAAGCAGGAG
AAATGCAGACGCAAAACACGCGTCCAAAGTGGGAGGAAATTTGATCGTAA
TGTTTTGATCCCTCTTGCCCTCCCTTCCACCCTCCCTTTCTTCTGTCTCT
TAATTTGTGTCCTTACTTTTGTTTTCCCATCTAATCCTCACGGCGTTACA
CGAGAAAGTGTGAGTTGGGCCCACTTACGTAAATTCACCCACCCCTCCTC
CCTCTCTCTCATTTCGCAGTACATGCTGCTTGTCACTGTCTTTCCTCAGT
CATCAACGGGCACAAAACAAAAGGAAAAGGCGCGCGAACGGACGGGAGTG
GTTTGTTCAAATT
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protein sequence of NO04G04040.1

>NO04G04040.1-protein ID=NO04G04040.1-protein|Name=NO04G04040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=172bp
MSGVARRKMPQSGAITSQQQATLDASTKKQQQQQQPSDDLGAMAIFQKAL
IFRGNWNKETFPEFLDVIYWLRQMLALIIGLVWGRAPSLGGPAIMSFVGL
ELMLPRMYYQKWASVDEDDFDAVALLKEGLQSAAGVFFATWVLTYTICHN
ASFEKAAAAAANAAAAGGAGP*
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Synonyms
Publications