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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr4 | genome | chr4:1061262..1063807 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G03950.1 vs.
Match: XP_005855772.1 (hsp70-interacting protein, partial [Nannochloropsis gaditana CCMP526]; EKU20592.1 hsp70-interacting protein, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 285.0 bits (728), Expect = 3.500e-73 Identity = 179/350 (51.14%), Postives = 223/350 (63.71%), Query Frame = 0
Query: 1 MEGTFMDMATRLQGLLDALDKLPDENEAGKESDITRTTTPSPAAAVEQEGLTSTERAEALWEEVQEHVENLDYALMFCQAGGLPTLFRFLLQAAAAAEDKEAEARAVPALAVLATLTQNNLPVQELVLQFPFGEVEDKDKKISISSNTGSSVRGVMPLLASFLIK--GADDSSSSSELNTRRSSRFQAKALQAISCIIRGHRVAEADFVQHFALRVFIAALQPSQDARVHGKALFFLQALLGADDATRERGEELASLLPLVVPCLLVEEDEGLRHTAACVVSEMTNLLGGPTVVFGREGGEALREAMLKRRDVIEKLEGVEREEA-EDELRFWEVLAGGGEGRVFSRDGE 348
MEGTF+DM+ RL+ L L++L G+ S+ + AA +QE ++ ER +ALWEE++E VENLDYALMFCQ GGL LF++LL+AAA +D EA AV L VLATLTQNN PVQ VL F + R V+ LL+ ++ G +++SS SE + R R QAK L A+SC +RGH AEA FVQ +A VF A LQPS+ RV KALFFLQALLGADDAT RGE L LLPLVVPCL E+ LRHTAACVV+ + NL GGP V+FG++GGEALR AM +R+ ++ G +EA +EL FW LA GG GR+ RDGE
Sbjct: 32 MEGTFVDMSKRLRERLGLLEELLQ----GERSEPRPRPEANVQAASDQEP-SAVERGQALWEEMEEDVENLDYALMFCQVGGLQVLFQYLLRAAAGEQDAEARTWAVRVLTVLATLTQNNPPVQAEVLAFAMQDAR-------------GGGRDVLALLSRLFLREVGLEEASSVSEGSGERHGRLQAKLLHALSCTVRGHADAEARFVQSYAPEVFRAGLQPSRQERVQVKALFFLQALLGADDATPARGEALLPLLPLVVPCLENNENVDLRHTAACVVTGLANLTGGPAVIFGKDGGEALRRAMERRQGLL----GSGSDEAMGEELLFWSALARGGTGRMSWRDGE 359
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G03950.1 ID=NO04G03950.1|Name=NO04G03950.1|organism=Nannochloropsis oceanica|type=mRNA|length=2422bp
TCCCCTCCCGCACCACCAACATCATCCCCAACCCCCTTTCTCCACCCCTC
CTCCTGGGCCTCGCCCTGCTCCTCCTCACTGTTGGCAGCGTCATCGCCTT
GCTCTCCCTCTTCAATGCCGTCCGATCCAGCACAAGTGACACTGTTTTCA
TCAAGGTTGTCGGGAGCGGGATCGCATCCCTCCTGCTCGCCGTGGGGTTC
CGACGTCAACTGGTCCTCATGTGCAAGACACGCAGCAGCCAAGGACTCTC
CCTCGGTCTCCCCCTCCTCGATGTGACAGGGTCTTCCCTCTCCATCCTTG
TCCTCTGCCTTGAGGCGAAGGAGGAAGGGGACGACGTGAATGTGGGAGGC
ATGGTCCCGTATGCGATTATTGTGGGGTTTCAGGTAGGGCAGGAGGAAGG
GAGAGAGGGATGAAGGGAGGGAGGGAGGGAAGGTGCATGGGCTTGTCCCT
GTAGGATCAGCCTGGCTCCTCGCTGTTGATCCTGATGCTATATTTGGAGA
TAAGAGAGGAAGAGGACGATGTAGCTGTAGATATGAGAAGAGATACACAC
CAGGTGGTCATAATGAGGTGTCAGATAAAAGAGGGAGGGAGGGAAAGAGG
GAGGGCAGATTTCACTGAATATGTTCTCGTCTTCTCCTCGTTCTTAAGCT
CTTTCTTTATTTGTCTGCGCATGGGACGCATGTCTGACCCCCTTCTCCTC
CCCTCCTCCTTCCCTCCTTCTCTCTCCCAGGTCCTGGTCATTGTCATCGC
CTTGGTCATCTTTCCTGATCCCAATCGTTTCACAAGTAACGGATTGAGGG
AAGGCAGCTTGCAAGAGTTTTTGCATTTTATCCTGCAGATCACGTGCATG
CAAAACCCTTACACAACTCTATGACTCACATATAGGCTGACGTGCTAGAG
GACGTCGACCGCACTCGAAACAAGTCAAGCTCAGTACCAGAAAAGCAAAA
TGAGTGGCGCCGAAGGATCATCATCACTAGGACCCGACGTCTGGAAGGAC
CTGCTGAACTGCAAGAAGAAGCATCTGCCGCAGACCCCACTACCATCCCA
GCAGCCGTCGGGCCTATTTCACACGAAAAAAAGCAATGGCTAGAGCAGGT
GATGGAGGGGACGTTTATGGACATGGCCACACGCTTGCAAGGGCTGCTGG
ATGCTTTGGATAAGCTGCCGGACGAAAACGAAGCTGGTAAGGAAAGTGAC
ATTACGCGGACAACGACGCCTTCTCCTGCTGCTGCTGTCGAGCAAGAAGG
GCTGACCTCGACAGAGCGCGCCGAGGCGTTGTGGGAGGAAGTACAAGAGC
ACGTGGAAAATCTCGATTACGCCTTGATGTTTTGCCAGGCGGGTGGCTTG
CCTACTCTCTTCCGATTCTTGCTGCAGGCCGCAGCGGCGGCGGAGGACAA
GGAAGCAGAGGCAAGGGCGGTCCCAGCGTTGGCGGTATTGGCGACGTTGA
CGCAGAATAATTTGCCCGTGCAGGAGCTTGTGCTTCAATTTCCGTTCGGG
GAGGTGGAAGACAAGGATAAGAAGATAAGCATCAGCAGCAATACCGGCAG
CAGTGTGAGGGGTGTGATGCCTTTGCTGGCCAGTTTCCTGATAAAGGGAG
CGGATGACAGCAGCAGCAGCAGCGAACTTAACACTAGAAGGAGCAGTCGC
TTTCAAGCCAAAGCCCTGCAGGCTATTTCTTGCATTATCCGCGGCCACAG
AGTAGCCGAAGCTGACTTCGTCCAGCACTTCGCTCTCCGTGTTTTTATTG
CTGCCTTGCAACCGAGCCAAGACGCACGTGTGCATGGCAAGGCACTTTTC
TTTCTTCAGGCCTTGCTAGGGGCGGACGATGCGACACGAGAGAGAGGAGA
GGAGCTTGCGTCTTTGCTACCGTTGGTGGTTCCTTGTCTGTTGGTGGAGG
AAGATGAAGGGTTGCGACATACCGCGGCGTGCGTGGTCTCAGAGATGACG
AATTTATTGGGGGGACCGACGGTGGTATTTGGGAGGGAGGGTGGAGAAGC
GTTGAGGGAGGCAATGTTGAAAAGAAGGGATGTGATCGAGAAGTTGGAAG
GGGTAGAGAGGGAGGAGGCGGAGGACGAGTTGAGGTTCTGGGAAGTTTTG
GCGGGAGGAGGGGAGGGAAGGGTATTTTCGAGGGATGGAGAGAGGGCTGG
GTCAGGAGGAGGAGGAGGAGCAGCAGCAGCAGCAGCAGCGGTAGAAGAAG
GAGAGGCTGAGGACGTGGAGGGTGACGGTGGTCAGGCCGCAGCAGCAGCG
CCGGTCTTATTGCTGGCCCCGCCGCATTATTTGAGTGGGGCGAGCAATGC
GCCGTAGAGCACCAGATGAAGACAAATAAATAGCGTTAAAATTTCATTGA
ACGACATTCCAAAAAATAATCAAAGGGAAAAAGCATCTTGTGGCTGGCGC
AAGGGATCCCTCTAGCCCTCCG back to topprotein sequence of NO04G03950.1 >NO04G03950.1-protein ID=NO04G03950.1-protein|Name=NO04G03950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=402bp
MEGTFMDMATRLQGLLDALDKLPDENEAGKESDITRTTTPSPAAAVEQEG
LTSTERAEALWEEVQEHVENLDYALMFCQAGGLPTLFRFLLQAAAAAEDK
EAEARAVPALAVLATLTQNNLPVQELVLQFPFGEVEDKDKKISISSNTGS
SVRGVMPLLASFLIKGADDSSSSSELNTRRSSRFQAKALQAISCIIRGHR
VAEADFVQHFALRVFIAALQPSQDARVHGKALFFLQALLGADDATRERGE
ELASLLPLVVPCLLVEEDEGLRHTAACVVSEMTNLLGGPTVVFGREGGEA
LREAMLKRRDVIEKLEGVEREEAEDELRFWEVLAGGGEGRVFSRDGERAG
SGGGGGAAAAAAAVEEGEAEDVEGDGGQAAAAAPVLLLAPPHYLSGASNA
P* back to topmRNA from alignment at chr4:1061262..1063807- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G03950.1 ID=NO04G03950.1|Name=NO04G03950.1|organism=Nannochloropsis oceanica|type=mRNA|length=2546bp|location=Sequence derived from alignment at chr4:1061262..1063807- (Nannochloropsis oceanica)
TCCCCTCCCGCACCACCAACATCATCCCCAACCCCCTTTCTCCACCCCTC
CTCCTGGGCCTCGCCCTGCTCCTCCTCACTGTTGGCAGCGTCATCGCCTT
GCTCTCCCTCTTCAATGCCGTCCGATCCAGCACAAGTGACACTGTTTTCA
TCAAGGTTGTCGGGAGCGGGATCGCATCCCTCCTGCTCGCCGTGGGGTTC
CGACGTCAACTGGTCCTCATGTGCAAGACACGCAGCAGCCAAGGACTCTC
CCTCGGTCTCCCCCTCCTCGATGTGACAGGGTCTTCCCTCTCCATCCTTG
TCCTCTGCCTTGAGGCGAAGGAGGAAGGGGACGACGTGAATGTGGGAGGC
ATGGTCCCGTATGCGATTATTGTGGGGTTTCAGGTAGGGCAGGAGGAAGG
GAGAGAGGGATGAAGGGAGGGAGGGAGGGAAGGTGCATGGGCTTGTCCCT
GTAGGATCAGCCTGGCTCCTCGCTGTTGATCCTGATGCTATATTTGGAGA
TAAGAGAGGAAGAGGACGATGTAGCTGTAGATATGAGAAGAGATACACAC
CAGGTGGTCATAATGAGGTGTCAGATAAAAGAGGGAGGGAGGGAAAGAGG
GAGGGCAGATTTCACTGAATATGTTCTCGTCTTCTCCTCGTTCTTAAGCT
CTTTCTTTATTTGTCTGCGCATGGGACGCATGTCTGACCCCCTTCTCCTC
CCCTCCTCCTTCCCTCCTTCTCTCTCCCAGGTCCTGGTCATTGTCATCGC
CTTGGTCATCTTTCCTGATCCCAATCGTTTCACAAGTAACGGATTGAGGG
AAGGCAGCTTGCAAGAGTTTTTGCATTTTATCCTGCAGATCACGTGCATG
CAAAACCCTTACACAACTCTATGACTCACATATAGGCTGACGTGCTAGAG
GACGTCGACCGCACTCGAAACAAGTCAAGCTCAGTACCAGAAAAGCAAAA
TGAGTGGCGCCGAAGGATCATCATCACTAGGACCCGACGTCTGGAAGGAC
CTGCTGAACTGGTACGTCTACATAGAGACGTGCTGAACGTGGGCGGGATA
AATGTGCGAGAAGATGCATTAAAAACTCTAACCCTTCTCACTTGGTTCCG
CCTCCCACCCCATCATAATTAGGACGCTCAAACAGCAAGAAGAAGCATCT
GCCGCAGACCCCACTACCATCCCAGCAGCCGTCGGGCCTATTTCACACGA
AAAAAAGCAATGGCTAGAGCAGGTGATGGAGGGGACGTTTATGGACATGG
CCACACGCTTGCAAGGGCTGCTGGATGCTTTGGATAAGCTGCCGGACGAA
AACGAAGCTGGTAAGGAAAGTGACATTACGCGGACAACGACGCCTTCTCC
TGCTGCTGCTGTCGAGCAAGAAGGGCTGACCTCGACAGAGCGCGCCGAGG
CGTTGTGGGAGGAAGTACAAGAGCACGTGGAAAATCTCGATTACGCCTTG
ATGTTTTGCCAGGCGGGTGGCTTGCCTACTCTCTTCCGATTCTTGCTGCA
GGCCGCAGCGGCGGCGGAGGACAAGGAAGCAGAGGCAAGGGCGGTCCCAG
CGTTGGCGGTATTGGCGACGTTGACGCAGAATAATTTGCCCGTGCAGGAG
CTTGTGCTTCAATTTCCGTTCGGGGAGGTGGAAGACAAGGATAAGAAGAT
AAGCATCAGCAGCAATACCGGCAGCAGTGTGAGGGGTGTGATGCCTTTGC
TGGCCAGTTTCCTGATAAAGGGAGCGGATGACAGCAGCAGCAGCAGCGAA
CTTAACACTAGAAGGAGCAGTCGCTTTCAAGCCAAAGCCCTGCAGGCTAT
TTCTTGCATTATCCGCGGCCACAGAGTAGCCGAAGCTGACTTCGTCCAGC
ACTTCGCTCTCCGTGTTTTTATTGCTGCCTTGCAACCGAGCCAAGACGCA
CGTGTGCATGGCAAGGCACTTTTCTTTCTTCAGGCCTTGCTAGGGGCGGA
CGATGCGACACGAGAGAGAGGAGAGGAGCTTGCGTCTTTGCTACCGTTGG
TGGTTCCTTGTCTGTTGGTGGAGGAAGATGAAGGGTTGCGACATACCGCG
GCGTGCGTGGTCTCAGAGATGACGAATTTATTGGGGGGACCGACGGTGGT
ATTTGGGAGGGAGGGTGGAGAAGCGTTGAGGGAGGCAATGTTGAAAAGAA
GGGATGTGATCGAGAAGTTGGAAGGGGTAGAGAGGGAGGAGGCGGAGGAC
GAGTTGAGGTTCTGGGAAGTTTTGGCGGGAGGAGGGGAGGGAAGGGTATT
TTCGAGGGATGGAGAGAGGGCTGGGTCAGGAGGAGGAGGAGGAGCAGCAG
CAGCAGCAGCAGCGGTAGAAGAAGGAGAGGCTGAGGACGTGGAGGGTGAC
GGTGGTCAGGCCGCAGCAGCAGCGCCGGTCTTATTGCTGGCCCCGCCGCA
TTATTTGAGTGGGGCGAGCAATGCGCCGTAGAGCACCAGATGAAGACAAA
TAAATAGCGTTAAAATTTCATTGAACGACATTCCAAAAAATAATCAAAGG
GAAAAAGCATCTTGTGGCTGGCGCAAGGGATCCCTCTAGCCCTCCG back to topCoding sequence (CDS) from alignment at chr4:1061262..1063807- >NO04G03950.1 ID=NO04G03950.1|Name=NO04G03950.1|organism=Nannochloropsis oceanica|type=CDS|length=1206bp|location=Sequence derived from alignment at chr4:1061262..1063807- (Nannochloropsis oceanica)
ATGGAGGGGACGTTTATGGACATGGCCACACGCTTGCAAGGGCTGCTGGA
TGCTTTGGATAAGCTGCCGGACGAAAACGAAGCTGGTAAGGAAAGTGACA
TTACGCGGACAACGACGCCTTCTCCTGCTGCTGCTGTCGAGCAAGAAGGG
CTGACCTCGACAGAGCGCGCCGAGGCGTTGTGGGAGGAAGTACAAGAGCA
CGTGGAAAATCTCGATTACGCCTTGATGTTTTGCCAGGCGGGTGGCTTGC
CTACTCTCTTCCGATTCTTGCTGCAGGCCGCAGCGGCGGCGGAGGACAAG
GAAGCAGAGGCAAGGGCGGTCCCAGCGTTGGCGGTATTGGCGACGTTGAC
GCAGAATAATTTGCCCGTGCAGGAGCTTGTGCTTCAATTTCCGTTCGGGG
AGGTGGAAGACAAGGATAAGAAGATAAGCATCAGCAGCAATACCGGCAGC
AGTGTGAGGGGTGTGATGCCTTTGCTGGCCAGTTTCCTGATAAAGGGAGC
GGATGACAGCAGCAGCAGCAGCGAACTTAACACTAGAAGGAGCAGTCGCT
TTCAAGCCAAAGCCCTGCAGGCTATTTCTTGCATTATCCGCGGCCACAGA
GTAGCCGAAGCTGACTTCGTCCAGCACTTCGCTCTCCGTGTTTTTATTGC
TGCCTTGCAACCGAGCCAAGACGCACGTGTGCATGGCAAGGCACTTTTCT
TTCTTCAGGCCTTGCTAGGGGCGGACGATGCGACACGAGAGAGAGGAGAG
GAGCTTGCGTCTTTGCTACCGTTGGTGGTTCCTTGTCTGTTGGTGGAGGA
AGATGAAGGGTTGCGACATACCGCGGCGTGCGTGGTCTCAGAGATGACGA
ATTTATTGGGGGGACCGACGGTGGTATTTGGGAGGGAGGGTGGAGAAGCG
TTGAGGGAGGCAATGTTGAAAAGAAGGGATGTGATCGAGAAGTTGGAAGG
GGTAGAGAGGGAGGAGGCGGAGGACGAGTTGAGGTTCTGGGAAGTTTTGG
CGGGAGGAGGGGAGGGAAGGGTATTTTCGAGGGATGGAGAGAGGGCTGGG
TCAGGAGGAGGAGGAGGAGCAGCAGCAGCAGCAGCAGCGGTAGAAGAAGG
AGAGGCTGAGGACGTGGAGGGTGACGGTGGTCAGGCCGCAGCAGCAGCGC
CGGTCTTATTGCTGGCCCCGCCGCATTATTTGAGTGGGGCGAGCAATGCG
CCGTAG back to top
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