NO04G03950, NO04G03950 (gene) Nannochloropsis oceanica

Overview
NameNO04G03950
Unique NameNO04G03950
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2546
Alignment locationchr4:1061262..1063807 -

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Properties
Property NameValue
DescriptionHsp70-interacting protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1061262..1063807 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR016024ARM-type_fold
Homology
BLAST of NO04G03950 vs. NCBI_GenBank
Match: XP_005855772.1 (hsp70-interacting protein, partial [Nannochloropsis gaditana CCMP526] >EKU20592.1 hsp70-interacting protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 286.6 bits (732), Expect = 1.200e-73
Identity = 179/350 (51.14%), Postives = 223/350 (63.71%), Query Frame = 0
Query:    1 MEGTFMDMATRLQGLLDALDKLPDENEAGKESDITRTTTPSPAAAVEQEGLTSTERAEALWEEVQEHVENLDYALMFCQAGGLPTLFRFLLQAAAAAEDKEAEARAVPALAVLATLTQNNLPVQELVLQFPFGEVEDKDKKISISSNTGSSVRGVMPLLASFLIK--GADDSSSSSELNTRRSSRFQAKALQAISCIIRGHRVAEADFVQHFALRVFIAALQPSQDARVHGKALFFLQALLGADDATRERGEELASLLPLVVPCLLVEEDEGLRHTAACVVSEMTNLLGGPTVVFGREGGEALREAMLKRRDVIEKLEGVEREEA-EDELRFWEVLAGGGEGRVFSRDGE 348
            MEGTF+DM+ RL+  L  L++L      G+ S+       +  AA +QE  ++ ER +ALWEE++E VENLDYALMFCQ GGL  LF++LL+AAA  +D EA   AV  L VLATLTQNN PVQ  VL F   +                  R V+ LL+   ++  G +++SS SE +  R  R QAK L A+SC +RGH  AEA FVQ +A  VF A LQPS+  RV  KALFFLQALLGADDAT  RGE L  LLPLVVPCL   E+  LRHTAACVV+ + NL GGP V+FG++GGEALR AM +R+ ++    G   +EA  +EL FW  LA GG GR+  RDGE
Sbjct:   32 MEGTFVDMSKRLRERLGLLEELLQ----GERSEPRPRPEANVQAASDQEP-SAVERGQALWEEMEEDVENLDYALMFCQVGGLQVLFQYLLRAAAGEQDAEARTWAVRVLTVLATLTQNNPPVQAEVLAFAMQDAR-------------GGGRDVLALLSRLFLREVGLEEASSVSEGSGERHGRLQAKLLHALSCTVRGHADAEARFVQSYAPEVFRAGLQPSRQERVQVKALFFLQALLGADDATPARGEALLPLLPLVVPCLENNENVDLRHTAACVVTGLANLTGGPAVIFGKDGGEALRRAMERRQGLL----GSGSDEAMGEELLFWSALARGGTGRMSWRDGE 359          
BLAST of NO04G03950 vs. NCBI_GenBank
Match: EWM28779.1 (hypothetical protein Naga_100002g128 [Nannochloropsis gaditana])

HSP 1 Score: 188.0 bits (476), Expect = 5.900e-44
Identity = 109/196 (55.61%), Postives = 133/196 (67.86%), Query Frame = 0
Query:  155 VMPLLASFLIK--GADDSSSSSELNTRRSSRFQAKALQAISCIIRGHRVAEADFVQHFALRVFIAALQPSQDARVHGKALFFLQALLGADDATRERGEELASLLPLVVPCLLVEEDEGLRHTAACVVSEMTNLLGGPTVVFGREGGEALREAMLKRRDVIEKLEGVEREEA-EDELRFWEVLAGGGEGRVFSRDGE 348
            V+ LL+   ++  G + +SS SE +  R  R QAK L A+SC +RGH  AEA FVQ +A  VF A LQPS+  RV  KALFFLQALLGADDAT  RGE L  LLPLVVPCL   E+  LRHTAACVV+ + NL GGP V+FG++GGEALR AM +R+ ++    G   +EA  +EL FW  LA GG GR+  RDGE
Sbjct:   38 VLALLSRLFLREVGLEQASSVSEGSGERHGRLQAKLLHALSCTVRGHADAEARFVQSYAPEVFRAGLQPSRQERVQVKALFFLQALLGADDATPARGEALLPLLPLVVPCLENNENVDLRHTAACVVTGLANLTGGPAVIFGKDGGEALRRAMERRQGLL----GSGSDEAMGEELLFWSALARGGTGRMSWRDGE 229          
BLAST of NO04G03950 vs. NCBI_GenBank
Match: XP_002181179.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC47102.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 75.5 bits (184), Expect = 4.200e-10
Identity = 91/340 (26.76%), Postives = 149/340 (43.82%), Query Frame = 0
Query:    8 MATRLQGLLDALDK--LPDENEAGKE--SDITRTTTP-SPAAAVEQEGLTSTERAEALWEEVQEHVENLDYALMFCQAGGLPTLFRFLLQAAAAAEDKEAEARAVPALAVLATLTQNNLPVQELVLQFPFGEVEDKDKKISISSNTGSSVRGVMPLLASFLIKGADDSSSSSELNTRRSSRFQAKALQAISCIIRGHRVAEADFVQ------HFALRVFIAALQPSQDARVHGKALFFLQALLGADDATRERGEELASLLPLVVPCLLVEEDEG---LRHTAACVVSEMTNLLGGPTVVFGREGGEALREAMLKRRDVIEKLEGVEREEAEDELRFWEVL 334
            M+T  +  L+A+ K  + DENE  K    D+T          A ++EG    + AE L +E+++ VE +DYA  FC   GLP    FLL   A  +      RA+  L ++ATL  NN PVQ+ +L+                        G +  L+      ++ +S     NT    + +AK +QAI   +R H +AE  F +         + + +   +      V  + LFF +AL+ +D +TR R ++   L+  V   LL ++ EG   LR  A  +V ++ +       +   +   +L    ++R   +  L+G E+  A  EL  WE L
Sbjct:   37 MSTEDRAFLEAVMKEGIIDENERMKSILKDVTGMMEKWRQEPATDEEG----DHAEDLLQELRDIVEQIDYARAFCSMKGLP----FLLGCVAERDHMPVATRAM-CLGIIATLCANNPPVQKELLEL-----------------------GAIGALSRLFFLESESAS-----NTDHHGQMRAKIIQAIGSNVRSHELAETVFCELPQAPTLIEIGLGLTHSESPPPFAVRQRTLFFFRALITSDSSTRIRVQKFGPLIAQVAQLLLDDQIEGSQELREMALSMVEQILDQQKSVDCIVQHK--NSLVALGVRRIAAMRALDGEEKVFAAMELESWERL 337          
BLAST of NO04G03950 vs. NCBI_GenBank
Match: EAY92384.1 (hypothetical protein OsI_14114 [Oryza sativa Indica Group])

HSP 1 Score: 66.6 bits (161), Expect = 2.000e-7
Identity = 88/288 (30.56%), Postives = 130/288 (45.14%), Query Frame = 0
Query:   41 SPAAAVEQEGLTSTERAEALWEEVQEHVENLDYALMFCQAGGLPTLFRFLLQAAAAAEDKEAEARAVPALAVLATLTQNNLPVQELVLQFPFGEVEDKDKKISISSNTGSSVRGVMPLLASFLIKGADDSSSSSELNTRRSSRFQAKALQAISCIIRGHRVAEADFVQHFALRVFIAALQPSQDARVHGKALFFLQALLGADDATRERGEELASLLPLVVPCLLVEEDEGLRHTAACVVSEMT--NLLGGPTVVFGREGGEALREAMLKRRDVIE-KLEGVEREEAED 326
            +P   ++ +G+T  E  E + +E+QEHVE++D A      GGL  L  +L  + A    K AE        V++T+ QNN   Q+LV++                SN      G+ PLL +F        SS +  N+R       KAL AIS +IR ++   A F           AL  S DAR+  KAL  LQ LL  + A R    EL   LP ++  L   +D G+R  A   + E+   N  G          G AL +   K +DV++ ++EG+   +A+D
Sbjct:   62 TPDDVLQSQGVT-PENIEDMLDELQEHVESIDMANDLHSIGGLDPLLGYLKNSHAGIRAKAAE--------VVSTIVQNNPKSQQLVME----------------SN------GLEPLLTNF--------SSDASTNSR------TKALGAISSLIRHNQPGVAAFRLGNGYSALRDAL-GSDDARLQRKALHLLQYLLHDNKADRSVATELG--LPKLMMHLASSDDSGVREAALGGLLELARDNTSG---------AGNALPD-QDKLKDVLKSRIEGISTMDADD 291          
BLAST of NO04G03950 vs. NCBI_GenBank
Match: XP_002295718.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >ACI64435.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 64.3 bits (155), Expect = 9.800e-7
Identity = 80/309 (25.89%), Postives = 128/309 (41.42%), Query Frame = 0
Query:   60 LWEEVQEHVENLDYALMFCQAGGLPTLFRFLLQAAAAAEDKEAEARAVPALAVLATLTQNNLPVQELVLQFPFGEVEDKDKKISISSNTGSSVRGVMPLLASFLIKGADDSSSSSELNTRRSSRFQAKALQAISCIIRGHRVAEADFVQHFALRVFI------------AALQPSQDARVHGKALFFLQALLGADDATRERGEELASLLPLVVPCL-----LVEEDEGLRHTAACVVSEMTNLLGGPTVVFGREGGEA----------------LREAMLKRRDVIEKLEG--VEREEAEDELRFWEVL 334
            L++E+++ VE +DYA  F   GG+P    FLL   A  E    ++    AL+V+AT+ QNN PVQ  +L+                        G +P           D + + E         + K +QA+S  IRGH +AE  F ++   R+ +               QP   A++  + +F L+ALL ADD T ER E+  +++  +  C        E+D  +R  +  +++++      PT     +GG A                +    +KR   I  L+    ERE +  EL  WE L
Sbjct:   97 LFQELRDIVEQIDYARAFMAMGGIP----FLL-GCATTEGNVPKSIRKAALSVMATMCQNNPPVQLNLLEV-----------------------GHIPHFIQLFF----DYTPTEENGYVGDDSIREKVVQALSASIRGHSMAEHVFCKNEQGRLMLQIGIGMTQEEGKTEQQPKPSAQLRKRCMFLLRALLTADDTTNERWEQYKNVIAYI--CTHETNPAWEDDAEIREISIAMLTQLLKQKPSPT----EDGGTADEISVASTTIAQHKNDIAAIGIKRIKEIRALDKDCEEREYSSLELEEWEQL 367          
The following BLAST results are available for this feature:
BLAST of NO04G03950 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
XP_005855772.11.200e-7351.14hsp70-interacting protein, partial [Nannochloropsi... [more]
EWM28779.15.900e-4455.61hypothetical protein Naga_100002g128 [Nannochlorop... [more]
XP_002181179.14.200e-1026.76predicted protein [Phaeodactylum tricornutum CCAP ... [more]
EAY92384.12.000e-730.56hypothetical protein OsI_14114 [Oryza sativa Indic... [more]
XP_002295718.19.800e-725.89predicted protein [Thalassiosira pseudonana CCMP13... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL082nonsL082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009399NSK009399Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G03950.2NO04G03950.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO04G03950.1NO04G03950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|668864gene_2178Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100002g128gene1810Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G03950.2NO04G03950.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO04G03950.1NO04G03950.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G03950 ID=NO04G03950|Name=NO04G03950|organism=Nannochloropsis oceanica|type=gene|length=2546bp
TCCCCTCCCGCACCACCAACATCATCCCCAACCCCCTTTCTCCACCCCTC
CTCCTGGGCCTCGCCCTGCTCCTCCTCACTGTTGGCAGCGTCATCGCCTT
GCTCTCCCTCTTCAATGCCGTCCGATCCAGCACAAGTGACACTGTTTTCA
TCAAGGTTGTCGGGAGCGGGATCGCATCCCTCCTGCTCGCCGTGGGGTTC
CGACGTCAACTGGTCCTCATGTGCAAGACACGCAGCAGCCAAGGACTCTC
CCTCGGTCTCCCCCTCCTCGATGTGACAGGGTCTTCCCTCTCCATCCTTG
TCCTCTGCCTTGAGGCGAAGGAGGAAGGGGACGACGTGAATGTGGGAGGC
ATGGTCCCGTATGCGATTATTGTGGGGTTTCAGGTAGGGCAGGAGGAAGG
GAGAGAGGGATGAAGGGAGGGAGGGAGGGAAGGTGCATGGGCTTGTCCCT
GTAGGATCAGCCTGGCTCCTCGCTGTTGATCCTGATGCTATATTTGGAGA
TAAGAGAGGAAGAGGACGATGTAGCTGTAGATATGAGAAGAGATACACAC
CAGGTGGTCATAATGAGGTGTCAGATAAAAGAGGGAGGGAGGGAAAGAGG
GAGGGCAGATTTCACTGAATATGTTCTCGTCTTCTCCTCGTTCTTAAGCT
CTTTCTTTATTTGTCTGCGCATGGGACGCATGTCTGACCCCCTTCTCCTC
CCCTCCTCCTTCCCTCCTTCTCTCTCCCAGGTCCTGGTCATTGTCATCGC
CTTGGTCATCTTTCCTGATCCCAATCGTTTCACAAGTAACGGATTGAGGG
AAGGCAGCTTGCAAGAGTTTTTGCATTTTATCCTGCAGATCACGTGCATG
CAAAACCCTTACACAACTCTATGACTCACATATAGGCTGACGTGCTAGAG
GACGTCGACCGCACTCGAAACAAGTCAAGCTCAGTACCAGAAAAGCAAAA
TGAGTGGCGCCGAAGGATCATCATCACTAGGACCCGACGTCTGGAAGGAC
CTGCTGAACTGgtacgtctacatagagacgtgctgaacgtgggcgggata
aatgtgcgagaagatgcattaaaaactctaacccttctcacttggttccg
cctcccaccccatcataattagGACGCTCAAACAGCAAGAAGAAGCATCT
GCCGCAGACCCCACTACCATCCCAGCAGCCGTCGGGCCTATTTCACACGA
AAAAAAGCAATGGCTAGAGCAGGTGATGGAGGGGACGTTTATGGACATGG
CCACACGCTTGCAAGGGCTGCTGGATGCTTTGGATAAGCTGCCGGACGAA
AACGAAGCTGGTAAGGAAAGTGACATTACGCGGACAACGACGCCTTCTCC
TGCTGCTGCTGTCGAGCAAGAAGGGCTGACCTCGACAGAGCGCGCCGAGG
CGTTGTGGGAGGAAGTACAAGAGCACGTGGAAAATCTCGATTACGCCTTG
ATGTTTTGCCAGGCGGGTGGCTTGCCTACTCTCTTCCGATTCTTGCTGCA
GGCCGCAGCGGCGGCGGAGGACAAGGAAGCAGAGGCAAGGGCGGTCCCAG
CGTTGGCGGTATTGGCGACGTTGACGCAGAATAATTTGCCCGTGCAGGAG
CTTGTGCTTCAATTTCCGTTCGGGGAGGTGGAAGACAAGGATAAGAAGAT
AAGCATCAGCAGCAATACCGGCAGCAGTGTGAGGGGTGTGATGCCTTTGC
TGGCCAGTTTCCTGATAAAGGGAGCGGATGACAGCAGCAGCAGCAGCGAA
CTTAACACTAGAAGGAGCAGTCGCTTTCAAGCCAAAGCCCTGCAGGCTAT
TTCTTGCATTATCCGCGGCCACAGAGTAGCCGAAGCTGACTTCGTCCAGC
ACTTCGCTCTCCGTGTTTTTATTGCTGCCTTGCAACCGAGCCAAGACGCA
CGTGTGCATGGCAAGGCACTTTTCTTTCTTCAGGCCTTGCTAGGGGCGGA
CGATGCGACACGAGAGAGAGGAGAGGAGCTTGCGTCTTTGCTACCGTTGG
TGGTTCCTTGTCTGTTGGTGGAGGAAGATGAAGGGTTGCGACATACCGCG
GCGTGCGTGGTCTCAGAGATGACGAATTTATTGGGGGGACCGACGGTGGT
ATTTGGGAGGGAGGGTGGAGAAGCGTTGAGGGAGGCAATGTTGAAAAGAA
GGGATGTGATCGAGAAGTTGGAAGGGGTAGAGAGGGAGGAGGCGGAGGAC
GAGTTGAGGTTCTGGGAAGTTTTGGCGGGAGGAGGGGAGGGAAGGGTATT
TTCGAGGGATGGAGAGAGGGCTGGGTCAGGAGGAGGAGGAGGAGCAGCAG
CAGCAGCAGCAGCGGTAGAAGAAGGAGAGGCTGAGGACGTGGAGGGTGAC
GGTGGTCAGGCCGCAGCAGCAGCGCCGGTCTTATTGCTGGCCCCGCCGCA
TTATTTGAGTGGGGCGAGCAATGCGCCGTAGAGCACCAGATGAAGACAAA
TAAATAGCGTTAAAATTTCATTGAACGACATTCCAAAAAATAATCAAAGG
GAAAAAGCATCTTGTGGCTGGCGCAAGGGATCCCTCTAGCCCTCCG
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protein sequence of NO04G03950.2

>NO04G03950.2-protein ID=NO04G03950.2-protein|Name=NO04G03950.2|organism=Nannochloropsis oceanica|type=polypeptide|length=457bp
MSGAEGSSSLGPDVWKDLLNWTLKQQEEASAADPTTIPAAVGPISHEKKQ
WLEQVMEGTFMDMATRLQGLLDALDKLPDENEAGKESDITRTTTPSPAAA
VEQEGLTSTERAEALWEEVQEHVENLDYALMFCQAGGLPTLFRFLLQAAA
AAEDKEAEARAVPALAVLATLTQNNLPVQELVLQFPFGEVEDKDKKISIS
SNTGSSVRGVMPLLASFLIKGADDSSSSSELNTRRSSRFQAKALQAISCI
IRGHRVAEADFVQHFALRVFIAALQPSQDARVHGKALFFLQALLGADDAT
RERGEELASLLPLVVPCLLVEEDEGLRHTAACVVSEMTNLLGGPTVVFGR
EGGEALREAMLKRRDVIEKLEGVEREEAEDELRFWEVLAGGGEGRVFSRD
GERAGSGGGGGAAAAAAAVEEGEAEDVEGDGGQAAAAAPVLLLAPPHYLS
GASNAP*
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protein sequence of NO04G03950.1

>NO04G03950.1-protein ID=NO04G03950.1-protein|Name=NO04G03950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=402bp
MEGTFMDMATRLQGLLDALDKLPDENEAGKESDITRTTTPSPAAAVEQEG
LTSTERAEALWEEVQEHVENLDYALMFCQAGGLPTLFRFLLQAAAAAEDK
EAEARAVPALAVLATLTQNNLPVQELVLQFPFGEVEDKDKKISISSNTGS
SVRGVMPLLASFLIKGADDSSSSSELNTRRSSRFQAKALQAISCIIRGHR
VAEADFVQHFALRVFIAALQPSQDARVHGKALFFLQALLGADDATRERGE
ELASLLPLVVPCLLVEEDEGLRHTAACVVSEMTNLLGGPTVVFGREGGEA
LREAMLKRRDVIEKLEGVEREEAEDELRFWEVLAGGGEGRVFSRDGERAG
SGGGGGAAAAAAAVEEGEAEDVEGDGGQAAAAAPVLLLAPPHYLSGASNA
P*
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Synonyms
Publications