NO04G03940.1, NO04G03940.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G03940.1
Unique NameNO04G03940.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1464
Alignment locationchr4:1056650..1058113 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1056650..1058113 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G03940.1 vs.
Match: EWM28696.1 (SOUL heme-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 611.3 bits (1575), Expect = 2.600e-171
Identity = 321/492 (65.24%), Postives = 368/492 (74.80%), Query Frame = 0 
Query:    5 CSSRRKRPTTTHRSS-----GSSTSLPLLLT-------TTLGLAALSSGFVLPT---THLTPSHSSSTPTITTV--SASSAARIALLQRASSTIDKTSSSSSTNTSDEPAQDSTDSLASQFEAFYNRALDGKPAQLKSLFAPGATWTGVPLAEGGGSLQDSLDMIDQGRAFMIEPRMDVTGARRDGEGRVAVDWQLSGTWPFPYRPRVRAAGTSILTLDKSTGKIKQVEEKWDKPWWRVALEQASPRAWDLWHLYLTPPAEKSLYRVVKKLAAVEIREYYPRLVLELEQHDARPDIRFTELAWVLPDFAFTDELKLQGKAQYRETYVTTSPVESCVESVDWSPPSPQLRGLQTASSVPAKRIRHHVPVPSHLGLDPVSNRLPSPPVKGVETEQGQAGRYVLQPTRYMAVRRFKGWTQTDQYSTARRWLLKWCAKEGLKTTRNEMGKSRVWVQQHNMKAGFNMAGAFCLGIYEQPSYSDWGEIAVEVVEEEGW 480
            CSS R      H ++      S T  P+ L        T +     +SGFV P    +H   +  ++   +T +  +ASS  RI+LL+ AS+TIDK ++ S  N  +E  +   D  ASQFE +YNRAL GKPAQLKSLFA GATW+GVPL+EG G LQ   D +DQGRAFMIEP   VTG      G + ++WQLSGTWPFPYRPRVRAAGTS +TLDK TGK+KQVEE+W KPWWRV LEQASP+ WDLWHLYLTPPAEK LYRVVKKL+AVEIREYYPRLV+ELEQHDARPD+++TE AW+LPDFAFTDELKLQG+AQYRETYV TSPVESCVE VDWSPP P   G Q ASSV A+RIRHHVPVPSHLGLDP+S RLPSP  K V+TE GQAGRYV QP R+MAVR FKG TQT +Y  +RR LL+WC KEGL+T +NE GKSRVWVQQH MKAGFNM G FCLGIYEQ SYSDWGEIAVEV  +  W
Sbjct:   29 CSSDRALQALRHLAAMPLLHDSRTRPPICLKFGLIMCFTAIKWLGSASGFVAPINPDSHRARTSWTAATRLTPLPSAASSTLRISLLKCASATIDKATAVSVDN--EESKEGPLDLFASQFEQYYNRALQGKPAQLKSLFATGATWSGVPLSEGNGDLQGVFDALDQGRAFMIEPFFAVTGWEATDRG-MKLEWQLSGTWPFPYRPRVRAAGTSFITLDKGTGKMKQVEEQWHKPWWRVVLEQASPKGWDLWHLYLTPPAEKPLYRVVKKLSAVEIREYYPRLVIELEQHDARPDVQYTEWAWILPDFAFTDELKLQGRAQYRETYVATSPVESCVERVDWSPPLPPTGGQQPASSVAARRIRHHVPVPSHLGLDPLSPRLPSPSAKDVDTEAGQAGRYVRQPRRFMAVRAFKGLTQTQEYGASRRLLLEWCGKEGLRTVKNEKGKSRVWVQQHGMKAGFNMQGNFCLGIYEQASYSDWGEIAVEVERDPSW 517
The following BLAST results are available for this feature:
BLAST of NO04G03940.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28696.12.600e-17165.24SOUL heme-binding protein [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G03940NO04G03940Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G03940.1NO04G03940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G03940.1.cds1NO04G03940.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G03940.1 ID=NO04G03940.1|Name=NO04G03940.1|organism=Nannochloropsis oceanica|type=mRNA|length=1464bp
ATGTCCGTCCACTGCAGTAGCCGCAGAAAAAGACCAACAACAACGCACAG
AAGCAGTGGCAGCAGCACGTCATTGCCGCTGTTGCTGACGACGACACTGG
GCTTGGCTGCGCTCTCCTCTGGCTTTGTCTTACCTACCACACACTTGACG
CCCTCGCACAGTTCCTCTACCCCCACCATCACCACCGTCTCGGCCTCATC
CGCCGCAAGAATAGCACTCCTGCAACGCGCCTCCTCCACTATCGACAAAA
CGAGTTCTTCCTCTTCCACCAACACGTCCGATGAACCAGCCCAAGATTCC
ACCGATTCCCTTGCCTCTCAATTTGAGGCTTTCTACAACCGTGCCCTCGA
CGGGAAACCAGCCCAGCTCAAGTCCCTCTTCGCCCCCGGGGCGACCTGGA
CTGGCGTCCCTTTGGCAGAAGGTGGGGGTAGCTTGCAAGATTCATTAGAC
ATGATAGATCAAGGGAGGGCATTTATGATTGAGCCGCGTATGGATGTGAC
AGGCGCCAGGCGTGACGGCGAGGGAAGGGTGGCAGTTGACTGGCAGCTGT
CGGGTACCTGGCCTTTCCCCTACCGACCCCGCGTCCGCGCTGCAGGGACA
TCCATCTTGACCTTGGACAAGAGCACCGGAAAAATCAAACAGGTGGAAGA
AAAGTGGGATAAGCCCTGGTGGCGTGTTGCCCTCGAGCAAGCCTCGCCTC
GTGCATGGGACTTGTGGCACTTGTATCTTACCCCTCCGGCGGAAAAGTCA
CTTTATCGCGTCGTCAAAAAACTGGCAGCGGTAGAGATCCGTGAGTATTA
CCCTCGGCTGGTACTTGAGTTGGAGCAGCATGATGCCAGACCGGACATTC
GGTTTACGGAATTGGCATGGGTGTTGCCTGATTTTGCCTTTACGGATGAG
TTGAAGCTGCAGGGGAAGGCACAATATCGAGAAACGTATGTCACGACCAG
CCCAGTTGAAAGCTGTGTGGAGAGTGTTGATTGGTCCCCTCCTTCCCCTC
AACTAAGGGGCTTGCAAACTGCTTCCAGTGTACCTGCAAAGAGAATTCGG
CACCACGTGCCAGTTCCTTCTCATTTAGGGCTTGATCCTGTCTCGAACCG
CTTGCCTTCCCCTCCTGTGAAGGGGGTGGAGACGGAGCAGGGGCAGGCTG
GGAGGTATGTGCTGCAGCCGACTAGATACATGGCGGTGAGACGGTTTAAG
GGTTGGACGCAGACGGACCAGTACTCGACAGCACGACGGTGGTTATTAAA
GTGGTGCGCAAAGGAGGGCCTCAAGACGACGAGAAATGAGATGGGCAAGT
CGAGGGTATGGGTGCAGCAACATAACATGAAGGCGGGGTTCAATATGGCG
GGTGCTTTCTGTCTAGGGATTTACGAACAGCCGAGTTATTCGGATTGGGG
CGAGATTGCGGTGGAGGTGGTGGAGGAGGAGGGTTGGGCAAGAGGGAAGC
GGGAGGGGATATAA
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protein sequence of NO04G03940.1

>NO04G03940.1-protein ID=NO04G03940.1-protein|Name=NO04G03940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=488bp
MSVHCSSRRKRPTTTHRSSGSSTSLPLLLTTTLGLAALSSGFVLPTTHLT
PSHSSSTPTITTVSASSAARIALLQRASSTIDKTSSSSSTNTSDEPAQDS
TDSLASQFEAFYNRALDGKPAQLKSLFAPGATWTGVPLAEGGGSLQDSLD
MIDQGRAFMIEPRMDVTGARRDGEGRVAVDWQLSGTWPFPYRPRVRAAGT
SILTLDKSTGKIKQVEEKWDKPWWRVALEQASPRAWDLWHLYLTPPAEKS
LYRVVKKLAAVEIREYYPRLVLELEQHDARPDIRFTELAWVLPDFAFTDE
LKLQGKAQYRETYVTTSPVESCVESVDWSPPSPQLRGLQTASSVPAKRIR
HHVPVPSHLGLDPVSNRLPSPPVKGVETEQGQAGRYVLQPTRYMAVRRFK
GWTQTDQYSTARRWLLKWCAKEGLKTTRNEMGKSRVWVQQHNMKAGFNMA
GAFCLGIYEQPSYSDWGEIAVEVVEEEGWARGKREGI*
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mRNA from alignment at chr4:1056650..1058113-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G03940.1 ID=NO04G03940.1|Name=NO04G03940.1|organism=Nannochloropsis oceanica|type=mRNA|length=1464bp|location=Sequence derived from alignment at chr4:1056650..1058113- (Nannochloropsis oceanica)
ATGTCCGTCCACTGCAGTAGCCGCAGAAAAAGACCAACAACAACGCACAG
AAGCAGTGGCAGCAGCACGTCATTGCCGCTGTTGCTGACGACGACACTGG
GCTTGGCTGCGCTCTCCTCTGGCTTTGTCTTACCTACCACACACTTGACG
CCCTCGCACAGTTCCTCTACCCCCACCATCACCACCGTCTCGGCCTCATC
CGCCGCAAGAATAGCACTCCTGCAACGCGCCTCCTCCACTATCGACAAAA
CGAGTTCTTCCTCTTCCACCAACACGTCCGATGAACCAGCCCAAGATTCC
ACCGATTCCCTTGCCTCTCAATTTGAGGCTTTCTACAACCGTGCCCTCGA
CGGGAAACCAGCCCAGCTCAAGTCCCTCTTCGCCCCCGGGGCGACCTGGA
CTGGCGTCCCTTTGGCAGAAGGTGGGGGTAGCTTGCAAGATTCATTAGAC
ATGATAGATCAAGGGAGGGCATTTATGATTGAGCCGCGTATGGATGTGAC
AGGCGCCAGGCGTGACGGCGAGGGAAGGGTGGCAGTTGACTGGCAGCTGT
CGGGTACCTGGCCTTTCCCCTACCGACCCCGCGTCCGCGCTGCAGGGACA
TCCATCTTGACCTTGGACAAGAGCACCGGAAAAATCAAACAGGTGGAAGA
AAAGTGGGATAAGCCCTGGTGGCGTGTTGCCCTCGAGCAAGCCTCGCCTC
GTGCATGGGACTTGTGGCACTTGTATCTTACCCCTCCGGCGGAAAAGTCA
CTTTATCGCGTCGTCAAAAAACTGGCAGCGGTAGAGATCCGTGAGTATTA
CCCTCGGCTGGTACTTGAGTTGGAGCAGCATGATGCCAGACCGGACATTC
GGTTTACGGAATTGGCATGGGTGTTGCCTGATTTTGCCTTTACGGATGAG
TTGAAGCTGCAGGGGAAGGCACAATATCGAGAAACGTATGTCACGACCAG
CCCAGTTGAAAGCTGTGTGGAGAGTGTTGATTGGTCCCCTCCTTCCCCTC
AACTAAGGGGCTTGCAAACTGCTTCCAGTGTACCTGCAAAGAGAATTCGG
CACCACGTGCCAGTTCCTTCTCATTTAGGGCTTGATCCTGTCTCGAACCG
CTTGCCTTCCCCTCCTGTGAAGGGGGTGGAGACGGAGCAGGGGCAGGCTG
GGAGGTATGTGCTGCAGCCGACTAGATACATGGCGGTGAGACGGTTTAAG
GGTTGGACGCAGACGGACCAGTACTCGACAGCACGACGGTGGTTATTAAA
GTGGTGCGCAAAGGAGGGCCTCAAGACGACGAGAAATGAGATGGGCAAGT
CGAGGGTATGGGTGCAGCAACATAACATGAAGGCGGGGTTCAATATGGCG
GGTGCTTTCTGTCTAGGGATTTACGAACAGCCGAGTTATTCGGATTGGGG
CGAGATTGCGGTGGAGGTGGTGGAGGAGGAGGGTTGGGCAAGAGGGAAGC
GGGAGGGGATATAA
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Coding sequence (CDS) from alignment at chr4:1056650..1058113-

>NO04G03940.1 ID=NO04G03940.1|Name=NO04G03940.1|organism=Nannochloropsis oceanica|type=CDS|length=1464bp|location=Sequence derived from alignment at chr4:1056650..1058113- (Nannochloropsis oceanica)
ATGTCCGTCCACTGCAGTAGCCGCAGAAAAAGACCAACAACAACGCACAG
AAGCAGTGGCAGCAGCACGTCATTGCCGCTGTTGCTGACGACGACACTGG
GCTTGGCTGCGCTCTCCTCTGGCTTTGTCTTACCTACCACACACTTGACG
CCCTCGCACAGTTCCTCTACCCCCACCATCACCACCGTCTCGGCCTCATC
CGCCGCAAGAATAGCACTCCTGCAACGCGCCTCCTCCACTATCGACAAAA
CGAGTTCTTCCTCTTCCACCAACACGTCCGATGAACCAGCCCAAGATTCC
ACCGATTCCCTTGCCTCTCAATTTGAGGCTTTCTACAACCGTGCCCTCGA
CGGGAAACCAGCCCAGCTCAAGTCCCTCTTCGCCCCCGGGGCGACCTGGA
CTGGCGTCCCTTTGGCAGAAGGTGGGGGTAGCTTGCAAGATTCATTAGAC
ATGATAGATCAAGGGAGGGCATTTATGATTGAGCCGCGTATGGATGTGAC
AGGCGCCAGGCGTGACGGCGAGGGAAGGGTGGCAGTTGACTGGCAGCTGT
CGGGTACCTGGCCTTTCCCCTACCGACCCCGCGTCCGCGCTGCAGGGACA
TCCATCTTGACCTTGGACAAGAGCACCGGAAAAATCAAACAGGTGGAAGA
AAAGTGGGATAAGCCCTGGTGGCGTGTTGCCCTCGAGCAAGCCTCGCCTC
GTGCATGGGACTTGTGGCACTTGTATCTTACCCCTCCGGCGGAAAAGTCA
CTTTATCGCGTCGTCAAAAAACTGGCAGCGGTAGAGATCCGTGAGTATTA
CCCTCGGCTGGTACTTGAGTTGGAGCAGCATGATGCCAGACCGGACATTC
GGTTTACGGAATTGGCATGGGTGTTGCCTGATTTTGCCTTTACGGATGAG
TTGAAGCTGCAGGGGAAGGCACAATATCGAGAAACGTATGTCACGACCAG
CCCAGTTGAAAGCTGTGTGGAGAGTGTTGATTGGTCCCCTCCTTCCCCTC
AACTAAGGGGCTTGCAAACTGCTTCCAGTGTACCTGCAAAGAGAATTCGG
CACCACGTGCCAGTTCCTTCTCATTTAGGGCTTGATCCTGTCTCGAACCG
CTTGCCTTCCCCTCCTGTGAAGGGGGTGGAGACGGAGCAGGGGCAGGCTG
GGAGGTATGTGCTGCAGCCGACTAGATACATGGCGGTGAGACGGTTTAAG
GGTTGGACGCAGACGGACCAGTACTCGACAGCACGACGGTGGTTATTAAA
GTGGTGCGCAAAGGAGGGCCTCAAGACGACGAGAAATGAGATGGGCAAGT
CGAGGGTATGGGTGCAGCAACATAACATGAAGGCGGGGTTCAATATGGCG
GGTGCTTTCTGTCTAGGGATTTACGAACAGCCGAGTTATTCGGATTGGGG
CGAGATTGCGGTGGAGGTGGTGGAGGAGGAGGGTTGGGCAAGAGGGAAGC
GGGAGGGGATATAA
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Synonyms
Publications