NO04G03900.2, NO04G03900.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G03900.2
Unique NameNO04G03900.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1605
Alignment locationchr4:1050433..1053646 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1050433..1053646 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G03900.2 vs.
Match: EWM28769.1 (vesicle transport through interaction with t-snares 1a [Nannochloropsis gaditana])

HSP 1 Score: 324.7 bits (831), Expect = 2.600e-85
Identity = 186/254 (73.23%), Postives = 214/254 (84.25%), Query Frame = 0 
Query:    4 SSFHHQQLREEEQESLLLRPHQSHPTASLP---AAAMAEIFESYEDEFRSLASDCQKNLSDLLTYETNRDKRMALLQLATPQVAQLEGIIKQMKVEVRSQDPATKAALSIKVQSYEKALAGVKSDLGKAREREEKDALFGGGRAGGGAGAMAQRQRLLETNERLANQNRTIENARKVMAETEQVGIQIGEELDSNREKIQNIRGKVSEVGGLTNTARRLISNISRRETQQKMLLWGVAGSLFIAIILIIYYSSR 255
            S+F  Q+  EE++E LL RP Q   + S P   + AM +IFESYEDEFR+LA DCQK LS+LLTYET+ DK  +LL+ A+PQV QLEG+IKQMK+EVRS D  TKAALS KVQ+YE+ L GVK+DLG+AREREEKDAL G   AGGG  +M QRQRLLET+ERLA+QNRTI+NARKVMAETEQVGI IGEEL+SNREKIQ+IRGKVSEVGGLTNTARRLIS+ISRRETQQK++LWGVA SL IAIILIIYYSSR
Sbjct:    6 SNFREQE--EEQREFLLHRPPQDRTSLSPPHGRSIAMTDIFESYEDEFRALAGDCQKKLSNLLTYETHGDKIQSLLRQASPQVTQLEGLIKQMKLEVRSLDAGTKAALSAKVQTYERVLTGVKADLGRAREREEKDALLG---AGGGV-SMVQRQRLLETSERLAHQNRTIDNARKVMAETEQVGIHIGEELESNREKIQSIRGKVSEVGGLTNTARRLISSISRRETQQKLMLWGVAASLLIAIILIIYYSSR 253
The following BLAST results are available for this feature:
BLAST of NO04G03900.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28769.12.600e-8573.23vesicle transport through interaction with t-snare... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G03900NO04G03900Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G03900.2NO04G03900.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G03900.2.cds1NO04G03900.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03900.2.cds2NO04G03900.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03900.2.cds3NO04G03900.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03900.2.cds4NO04G03900.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03900.2.cds5NO04G03900.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G03900.2 ID=NO04G03900.2|Name=NO04G03900.2|organism=Nannochloropsis oceanica|type=mRNA|length=1605bp
TGTTTCGCTCCTGGGCCCTAATCTACTCTGTGGACGGCCGATACGAATGA
CGAACAGTACGTACGCCAAAACCGTTTCGACTCTTTTTACAATCCCCCTC
TGCTCTGGTTGCCCACACCACCGCTCTCACTCAAATTCAGTCCCACTCCC
ACGCAATTCTCGCACAGATAAGTTAAGCTGCTCGCGGTTTTGTTCGGGAG
GAAGAGGGCATGGAGCAAGCGAGAGCGAGAAGTGAGGCGAGGGAGAGAGA
CGTCATGGCGCCACGGGACTTGGCTTTGCGCTGGTCATACGCATTGTTCA
AGGGCTCTTGATGTCATGGAAGATGCAGACATGCGGAAAGCAGGGTGTGC
ACGCGATTTGGGATATGAATGTGTGCAGGGAGAGTGAAAATCACGCGACT
GGCAGGCTAGATTTCTCGACGCACCCCCACCCGCTGTACCACCAGTTTCC
AGACTTGCTCATCTGCCTTCTTCAGGCTATGATGAGGCATCGCTGCATCT
TGCGCTATACGTTTCCACTCCGCTCCCTCAACATCCACGCATGCAACCCA
ACCATACCACAGAAGCAAAAGACAAGCCCACCATGCCGGCCGCGACCACC
TCTTTGTGAGCGCGTATGTCGTCGTCGTCGTTTCATCACCAGCAACTGAG
GGAGGAAGAGCAAGAATCCTTGCTCCTACGCCCGCATCAATCCCACCCCA
CGGCCTCCCTTCCTGCCGCCGCCATGGCTGAAATCTTTGAATCCTACGAG
GACGAGTTCCGCTCCCTCGCCTCAGACTGCCAGAAGAATCTCTCCGACCT
GCTCACTTACGAGACGAACCGCGACAAAAGGATGGCCCTCCTCCAACTAG
CCACCCCTCAAGTCGCCCAACTGGAAGGTATCATCAAGCAAATGAAGGTG
GAGGTGCGTTCGCAAGACCCCGCCACCAAAGCTGCTCTCAGCATCAAGGT
TCAATCCTATGAAAAGGCCTTGGCAGGGGTGAAGAGTGACTTGGGGAAGG
CCCGCGAGAGGGAAGAAAAAGACGCCCTGTTTGGGGGGGGGCGTGCTGGC
GGAGGGGCAGGGGCGATGGCGCAACGCCAGAGGTTGTTGGAGACAAATGA
GCGGCTGGCGAATCAAAATCGAACGATCGAGAATGCAAGGAAGGTGATGG
CAGAAACGGAGCAAGTTGGCATTCAGATCGGGGAGGAGCTGGATTCAAAC
AGGGAGAAGATTCAGAACATTCGCGGCAAGGTCTCGGAGGTGGGTGGACT
AACCAACACAGCCCGGCGACTCATCTCCAATATTAGCCGGCGAGAAACTC
AGCAGAAAATGCTATTATGGGGCGTGGCGGGTTCCTTGTTTATCGCTATT
ATCCTGATCATTTATTACTCGTCACGGTAGAGAAGCAGAGGGGAAGGGAA
GGAGGATCGAGAGAGGGTGAGGCCTTACATGATCGTATACCTTAATCTTT
TCAATAATTCAGGTGTATTCTCGTGACCTGCATGTAATACAAAAGCAACT
ACAGGAGGGGTTGTACAAAAGAAAGATAAATTAATGAGATTGCGCGACAG
GACACGAAATGAATTTGTCGCAGGGACGAGGAGAGAGGGAGTAAGAAATT
GCGGA
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protein sequence of NO04G03900.2

>NO04G03900.2-protein ID=NO04G03900.2-protein|Name=NO04G03900.2|organism=Nannochloropsis oceanica|type=polypeptide|length=255bp
MSSSSFHHQQLREEEQESLLLRPHQSHPTASLPAAAMAEIFESYEDEFRS
LASDCQKNLSDLLTYETNRDKRMALLQLATPQVAQLEGIIKQMKVEVRSQ
DPATKAALSIKVQSYEKALAGVKSDLGKAREREEKDALFGGGRAGGGAGA
MAQRQRLLETNERLANQNRTIENARKVMAETEQVGIQIGEELDSNREKIQ
NIRGKVSEVGGLTNTARRLISNISRRETQQKMLLWGVAGSLFIAIILIIY
YSSR*
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mRNA from alignment at chr4:1050433..1053646-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G03900.2 ID=NO04G03900.2|Name=NO04G03900.2|organism=Nannochloropsis oceanica|type=mRNA|length=3214bp|location=Sequence derived from alignment at chr4:1050433..1053646- (Nannochloropsis oceanica)
TGTTTCGCTCCTGGGCCCTAATCTACTCTGTGGACGGCCGATACGAATGA
CGAACAGTACGTACGCCAAAACCGTTTCGACTCTTTTTACAATCCCCCTC
TGCTCTGGTTGCCCACACCACCGCTCTCACTCAAATTCAGTCCCACTCCC
ACGCAATTCTCGCACAGATAAGTTAAGCTGCTCGCGGTTTTGTTCGGGAG
GAAGAGGGCATGGAGCAAGCGAGAGCGAGAAGTGAGGCGAGGGAGAGAGA
CGTCATGGCGCCACGGGACTTGGCTTTGCGCTGGTCATACGCATTGTTCA
AGGGCTCTTGATGTCATGGAAGATGCAGACATGCGGAAAGCAGGGTGTGC
ACGCGATTTGGGATATGAATGTGTGCAGGGAGAGTGAAAATCACGCGACT
GGCAGGCTAGATTTCTCGACGCACCCCCACCCGCTGTACCACCAGTTTCC
AGACTTGCTCATCTGCCTTCTTCAGGCTATGATGAGGCATCGCTGCATCT
TGCGCTATACGTTTCCACTCCGCTCCCTCAACATCCACGCATGCAACCCA
ACCATACCACAGAAGCAAAAGACAAGCCCACCATGCCGGCCGCGACCACC
TCTTTGTGAGCGCGTATGTCGTCGTCGTCGTTTCATCACCAGCAACTGAG
GGAGGAAGAGCAAGAATCCTTGGTAGCTTGACAAGGGGAAGGGAGGGAGG
AGAGGGAAGGGAGAGGGAAATGACGATTAATCTCTGGACCCTCCTTTGGT
CCTGCGCCCGTAACGAAGAAATGGATTAGTTTTGGAGGAGACGAACATGC
GTCGCCCTCTTTGCCGCTGCGTCTCGTGCCCCTTTTTTTACATGACACAA
GGGCATGCAGAGTGTGAATGACCATGAGGTGGCGAATCAGCGACTCGCTA
TGCTTGTCATCCACTCCCGGATTAGTCAGCGCCTTTCCCTTCATGGCGTA
TGGACAGACGTGTCGATGATTGTTACGCGTGGAAGTGAACATGATTTGAT
GGAGAACAGAGATCATCCCAGCCGCCTCATGTCGTCACACGCATGACGTG
CATCCTTTCACTCGTGGTTGAAGGACGCATGCAAAACTGCTTGACCTGTT
TCAACTCTTATTAGAATTGCGTAGAAGATTAGAAGAGCCTTTGCGTTAAT
GCCACGGTGCATGATGGATGACGTGCGAATACTCGTGGCCATCGTCTTGT
ATGTATGCCTTGGGCGATCCTTCGATTCCATCGCACTTATAAATCCCTCC
CTCGCCTCTCTCCCTCCCTTCACCCGTTTTTACCCGCCCATAGCTCCTAC
GCCCGCATCAATCCCACCCCACGGCCTCCCTTCCTGCCGCCGCCATGGCT
GAAATCTTTGAATCCTACGAGGACGAGTTCCGCTCCCTCGCCTCAGACTG
CCAGAAGAATCTCTCCGACCTGCTCACTTACGAGACGAACCGCGACAAAA
GGATGGCCCTCCTCCAACTAGCCACCCCTCAAGGTGAGTAGACACAGCAG
CAGGCATATGGCGTACTGGATGGAAGTGGGGCAGTAGAACAGAATTTTTC
ATGTATGGAGGGGTGAACATGTGTACCCTTGTACCCTCCCTATCTCCTTC
TCTCCCTCCTTTCTTTCACGTCGTATTGTCGCTGAAAAAAGGATATAAGA
TTGTGGGCCTTGACTTCATCTGCCCTACTGTCTCTTTGATTCCCGTTCCT
TCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCAGTCGCCCAACTGG
AAGGTATCATCAAGCAAATGAAGGTGGAGGTGCGTTCGCAAGACCCCGCC
ACCAAAGCTGCTCTCAGCATCAAGGTTCAATCCTATGAAAAGGCCTTGGC
AGGGGTGAAGAGTGACTTGGGGAAGGCCCGCGAGAGGGAAGAAAAAGACG
CCCTGTTTGGGGGGGGGCGTGCTGGCGGAGGGGCAGGGGCGATGGCGCAA
CGCCAGAGGTTGTTGGAGACAAATGAGCGGCTGGCGAATCAAAATCGAAC
GATCGAGAATGCAAGGAAGGTGATGGCAGAAACGGAGCAAGTTGGTAGGT
GAGAGAGGGAGGGAGGGAGAGGGAAAGCGGAAAAGAGGGAAGGACGATAG
AAATTTAGATTTCAATGGCGGTAGCAAGACACGAGCATCATTCAATTATT
ATCATATCGTTATGTTTTTTCCGACCATCCAGGCATTCAGATCGGGGAGG
AGCTGGATTCAAACAGGGAGAAGATTCAGAACATTCGCGGCAAGGTGAGA
TGAGAGATACGCGGAGATGTGTCAGTCAGGGGGGGGGGCATGGCCCATGT
ATTTGGTTGGCGTGCATCCCTTCCCTCTTCCGTCGCGTCTGGAATGCGAG
CAGGAATGTATGACCTCACTCCACAGCAACACGATTTCCCACCTTTTCTC
CTCCTTCCCTCCCTCCTTTCCTCCTTCCCTCCCTCCCTTCATGTTTTTTT
CACAGGTGAGCGAAGTGCAGGGCCTAGCCGGTCAGGCGAAGAAATTAGTC
AAGGACATGGGAAAGCGATGGTTCTAACCCGCTCACGCACTATACGTATA
TATATATATATATATATATTATTCCTCCTCTGAAGAGCCGTGCTGCTGCT
GGCGGATGGATGGGAAGGGAGGAGGGCAAGGGCGCGACGATGTCATTTTC
GCCTCCCCCCTCTCCTTCATCGTTTCCCAAGCTCACTTATGCGTGTAAAA
TTTTGTGCATATACTGTGCCTGTGCGTTTTTTGATTGCACAAGCGAATCG
TACATGACCATCTTCAACCCACCGTCCGTCCTTCCTCCTCTTCCTCTCCC
TCTCCTTCTACCTCTTCATCCATCCCTTCTTGAATCCAGGTCTCGGAGGT
GGGTGGACTAACCAACACAGCCCGGCGACTCATCTCCAATATTAGCCGGC
GAGAAACTCAGCAGAAAATGCTATTATGGGGCGTGGCGGGTTCCTTGTTT
ATCGCTATTATCCTGATCATTTATTACTCGTCACGGTAGAGAAGCAGAGG
GGAAGGGAAGGAGGATCGAGAGAGGGTGAGGCCTTACATGATCGTATACC
TTAATCTTTTCAATAATTCAGGTGTATTCTCGTGACCTGCATGTAATACA
AAAGCAACTACAGGAGGGGTTGTACAAAAGAAAGATAAATTAATGAGATT
GCGCGACAGGACACGAAATGAATTTGTCGCAGGGACGAGGAGAGAGGGAG
TAAGAAATTGCGGA
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Coding sequence (CDS) from alignment at chr4:1050433..1053646-

>NO04G03900.2 ID=NO04G03900.2|Name=NO04G03900.2|organism=Nannochloropsis oceanica|type=CDS|length=765bp|location=Sequence derived from alignment at chr4:1050433..1053646- (Nannochloropsis oceanica)
ATGTCGTCGTCGTCGTTTCATCACCAGCAACTGAGGGAGGAAGAGCAAGA
ATCCTTGCTCCTACGCCCGCATCAATCCCACCCCACGGCCTCCCTTCCTG
CCGCCGCCATGGCTGAAATCTTTGAATCCTACGAGGACGAGTTCCGCTCC
CTCGCCTCAGACTGCCAGAAGAATCTCTCCGACCTGCTCACTTACGAGAC
GAACCGCGACAAAAGGATGGCCCTCCTCCAACTAGCCACCCCTCAAGTCG
CCCAACTGGAAGGTATCATCAAGCAAATGAAGGTGGAGGTGCGTTCGCAA
GACCCCGCCACCAAAGCTGCTCTCAGCATCAAGGTTCAATCCTATGAAAA
GGCCTTGGCAGGGGTGAAGAGTGACTTGGGGAAGGCCCGCGAGAGGGAAG
AAAAAGACGCCCTGTTTGGGGGGGGGCGTGCTGGCGGAGGGGCAGGGGCG
ATGGCGCAACGCCAGAGGTTGTTGGAGACAAATGAGCGGCTGGCGAATCA
AAATCGAACGATCGAGAATGCAAGGAAGGTGATGGCAGAAACGGAGCAAG
TTGGCATTCAGATCGGGGAGGAGCTGGATTCAAACAGGGAGAAGATTCAG
AACATTCGCGGCAAGGTCTCGGAGGTGGGTGGACTAACCAACACAGCCCG
GCGACTCATCTCCAATATTAGCCGGCGAGAAACTCAGCAGAAAATGCTAT
TATGGGGCGTGGCGGGTTCCTTGTTTATCGCTATTATCCTGATCATTTAT
TACTCGTCACGGTAG
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Synonyms
Publications