NO04G03850.1, NO04G03850.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G03850.1
Unique NameNO04G03850.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1341
Alignment locationchr4:1037405..1038745 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1037405..1038745 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G03850.1 vs.
Match: EWM28829.1 (hypothetical protein Naga_100002g118 [Nannochloropsis gaditana])

HSP 1 Score: 581.6 bits (1498), Expect = 2.000e-162
Identity = 281/418 (67.22%), Postives = 332/418 (79.43%), Query Frame = 0 
Query:    4 AGFVDMEAVLSVTRGEADVYVSQSFESRPVYDTGKKKVLNWTARSEKRGSDHVSLPRTLFPACHEDCYFVIGVLGKSVVPKARFSLVVRREDSIVALQDGVALRDEVADDEYVHFSVKVTDPDADLSIHLTPLSGDPDLFVDAFPNTRPTKGNHTWASQSFGSDTLTLQAADMKTHCMPNPAVGLICDYFVSVFGWENASFSILASLHRGWTEPTQLFPGLPQAGEVSQGEYAYYSFYVPPDTLSLRFVLTPQNLAGGGKGGGEDVDGWDSWSDAWEDLPDQDLFLTTSREKEPGEANFDLRSMTWAGVEEITYAKEEMVKGGGEEQAFCTDCTVYLAVYGYAGVGA-YTLRVETGVSTLQNAVPATGHLSGDGTAYYTIYSDDPKAHVLLSLVTLSGDADLYVLAAKYEDEDEGEDE 421
            AG VDM+ VLSV RG+ADV+VSQ+FE RPVYD    KV NWTA+S  RGSD + +PRTLFP C +DCYFV+GV GKSVVP AR+SLV RR + IVALQDGVALRDEV + EY++FS K+TDP+AD+SIHLTP +GDPDLFV   PN RP+  NHTWAS+S G DTLTLQ +DMKTHC P+P+ GL CDYF+SV+G+ENASFS+L SLH+GW EP +LFPGLPQAGEV++GEY YYSFYVPPDT+SL+FVLTPQ+L G  K   ++ D WD WSD W+D+ DQDLFLTTSR++EPGE  FDLRS +WAGVEEITY+  E+     EE  FCT CTVYLAVYGYAG G  YTLRVETG+ TLQNAVP TGHL   G A+Y IYS D  AH+L S VTLSGDADLY+LA +    D+  ++
Sbjct: 1021 AGNVDMDVVLSVIRGQADVFVSQTFEGRPVYDAAHNKVRNWTAKSTSRGSDRLLVPRTLFPPCEKDCYFVLGVFGKSVVPPARYSLVARRAEGIVALQDGVALRDEVGEGEYLYFSFKLTDPEADVSIHLTPFNGDPDLFVAPAPNARPSATNHTWASRSLGPDTLTLQCSDMKTHCAPDPSRGLACDYFISVYGYENASFSLLVSLHQGWREPIELFPGLPQAGEVNEGEYVYYSFYVPPDTVSLQFVLTPQDLWGEDK---DEADDWDVWSDDWDDVADQDLFLTTSRDREPGEDTFDLRSTSWAGVEEITYSAAEL----QEEGVFCTGCTVYLAVYGYAGQGGEYTLRVETGLVTLQNAVPVTGHLVKGGAAHYKIYSRDSNAHLLFSAVTLSGDADLYILAVEPPAADDDNED 1431
The following BLAST results are available for this feature:
BLAST of NO04G03850.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28829.12.000e-16267.22hypothetical protein Naga_100002g118 [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G03850NO04G03850Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G03850.1NO04G03850.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G03850.1.cds1NO04G03850.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G03850.1 ID=NO04G03850.1|Name=NO04G03850.1|organism=Nannochloropsis oceanica|type=mRNA|length=1341bp
ATGGGAGCGGCGGGTTTTGTGGATATGGAGGCGGTGTTGAGCGTGACGAG
GGGGGAAGCGGATGTATATGTCTCGCAAAGCTTTGAGAGTCGGCCGGTGT
ATGATACAGGGAAGAAAAAAGTGTTGAATTGGACGGCCAGGAGCGAGAAG
AGGGGAAGCGATCACGTATCGTTACCTCGCACCTTGTTCCCTGCATGTCA
TGAGGATTGCTATTTTGTCATAGGCGTATTAGGGAAGAGTGTGGTGCCGA
AGGCGAGATTCTCTTTAGTGGTTCGACGAGAAGATAGCATCGTAGCCTTG
CAAGACGGGGTGGCGTTGAGGGACGAAGTAGCAGATGATGAATATGTGCA
TTTTTCGGTGAAGGTCACTGATCCTGATGCGGACCTGAGCATTCATTTAA
CACCTCTGAGTGGGGATCCTGATTTGTTTGTGGATGCATTTCCCAACACA
CGACCTACCAAGGGTAACCATACGTGGGCTAGTCAGTCGTTTGGCTCCGA
CACACTGACCTTACAGGCCGCAGATATGAAGACACACTGCATGCCGAACC
CTGCCGTAGGCTTGATATGCGATTATTTCGTATCGGTTTTTGGGTGGGAG
AATGCGTCGTTTTCGATCTTGGCTTCGCTCCATCGGGGATGGACGGAACC
CACTCAGCTTTTCCCTGGCTTGCCTCAGGCGGGGGAGGTGAGTCAGGGTG
AGTACGCATATTACTCTTTCTATGTGCCCCCGGATACACTTAGCTTGAGG
TTCGTTTTGACACCACAGAACCTGGCGGGAGGGGGCAAGGGGGGAGGCGA
GGATGTGGATGGTTGGGATAGCTGGTCCGATGCATGGGAGGACCTGCCAG
ACCAAGATTTGTTTTTGACGACTTCCCGAGAGAAAGAACCAGGCGAAGCG
AATTTTGACTTGCGGAGTATGACGTGGGCAGGGGTAGAGGAGATCACGTA
TGCTAAGGAGGAGATGGTGAAGGGAGGGGGGGAGGAACAGGCTTTCTGCA
CGGACTGCACGGTTTACTTGGCGGTGTATGGATATGCGGGTGTGGGTGCG
TATACTTTGAGGGTAGAGACGGGCGTGTCGACGCTCCAGAATGCGGTACC
TGCCACGGGGCATCTTTCGGGTGATGGGACTGCATATTATACGATTTATA
GTGATGATCCCAAAGCGCACGTGCTTTTGTCTTTGGTCACTTTATCGGGA
GATGCGGATTTGTATGTGCTTGCTGCGAAGTACGAGGACGAGGATGAAGG
CGAGGACGAGGAAGGGGGGGGGGGAAGCCGCGGTTTTGGCCGAGCAAGGA
CCATTATCATTGGAAGAGCAATCGGGTGGGGGACGATGTAG
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protein sequence of NO04G03850.1

>NO04G03850.1-protein ID=NO04G03850.1-protein|Name=NO04G03850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=447bp
MGAAGFVDMEAVLSVTRGEADVYVSQSFESRPVYDTGKKKVLNWTARSEK
RGSDHVSLPRTLFPACHEDCYFVIGVLGKSVVPKARFSLVVRREDSIVAL
QDGVALRDEVADDEYVHFSVKVTDPDADLSIHLTPLSGDPDLFVDAFPNT
RPTKGNHTWASQSFGSDTLTLQAADMKTHCMPNPAVGLICDYFVSVFGWE
NASFSILASLHRGWTEPTQLFPGLPQAGEVSQGEYAYYSFYVPPDTLSLR
FVLTPQNLAGGGKGGGEDVDGWDSWSDAWEDLPDQDLFLTTSREKEPGEA
NFDLRSMTWAGVEEITYAKEEMVKGGGEEQAFCTDCTVYLAVYGYAGVGA
YTLRVETGVSTLQNAVPATGHLSGDGTAYYTIYSDDPKAHVLLSLVTLSG
DADLYVLAAKYEDEDEGEDEEGGGGSRGFGRARTIIIGRAIGWGTM*
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mRNA from alignment at chr4:1037405..1038745-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G03850.1 ID=NO04G03850.1|Name=NO04G03850.1|organism=Nannochloropsis oceanica|type=mRNA|length=1341bp|location=Sequence derived from alignment at chr4:1037405..1038745- (Nannochloropsis oceanica)
ATGGGAGCGGCGGGTTTTGTGGATATGGAGGCGGTGTTGAGCGTGACGAG
GGGGGAAGCGGATGTATATGTCTCGCAAAGCTTTGAGAGTCGGCCGGTGT
ATGATACAGGGAAGAAAAAAGTGTTGAATTGGACGGCCAGGAGCGAGAAG
AGGGGAAGCGATCACGTATCGTTACCTCGCACCTTGTTCCCTGCATGTCA
TGAGGATTGCTATTTTGTCATAGGCGTATTAGGGAAGAGTGTGGTGCCGA
AGGCGAGATTCTCTTTAGTGGTTCGACGAGAAGATAGCATCGTAGCCTTG
CAAGACGGGGTGGCGTTGAGGGACGAAGTAGCAGATGATGAATATGTGCA
TTTTTCGGTGAAGGTCACTGATCCTGATGCGGACCTGAGCATTCATTTAA
CACCTCTGAGTGGGGATCCTGATTTGTTTGTGGATGCATTTCCCAACACA
CGACCTACCAAGGGTAACCATACGTGGGCTAGTCAGTCGTTTGGCTCCGA
CACACTGACCTTACAGGCCGCAGATATGAAGACACACTGCATGCCGAACC
CTGCCGTAGGCTTGATATGCGATTATTTCGTATCGGTTTTTGGGTGGGAG
AATGCGTCGTTTTCGATCTTGGCTTCGCTCCATCGGGGATGGACGGAACC
CACTCAGCTTTTCCCTGGCTTGCCTCAGGCGGGGGAGGTGAGTCAGGGTG
AGTACGCATATTACTCTTTCTATGTGCCCCCGGATACACTTAGCTTGAGG
TTCGTTTTGACACCACAGAACCTGGCGGGAGGGGGCAAGGGGGGAGGCGA
GGATGTGGATGGTTGGGATAGCTGGTCCGATGCATGGGAGGACCTGCCAG
ACCAAGATTTGTTTTTGACGACTTCCCGAGAGAAAGAACCAGGCGAAGCG
AATTTTGACTTGCGGAGTATGACGTGGGCAGGGGTAGAGGAGATCACGTA
TGCTAAGGAGGAGATGGTGAAGGGAGGGGGGGAGGAACAGGCTTTCTGCA
CGGACTGCACGGTTTACTTGGCGGTGTATGGATATGCGGGTGTGGGTGCG
TATACTTTGAGGGTAGAGACGGGCGTGTCGACGCTCCAGAATGCGGTACC
TGCCACGGGGCATCTTTCGGGTGATGGGACTGCATATTATACGATTTATA
GTGATGATCCCAAAGCGCACGTGCTTTTGTCTTTGGTCACTTTATCGGGA
GATGCGGATTTGTATGTGCTTGCTGCGAAGTACGAGGACGAGGATGAAGG
CGAGGACGAGGAAGGGGGGGGGGGAAGCCGCGGTTTTGGCCGAGCAAGGA
CCATTATCATTGGAAGAGCAATCGGGTGGGGGACGATGTAG
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Coding sequence (CDS) from alignment at chr4:1037405..1038745-

>NO04G03850.1 ID=NO04G03850.1|Name=NO04G03850.1|organism=Nannochloropsis oceanica|type=CDS|length=1341bp|location=Sequence derived from alignment at chr4:1037405..1038745- (Nannochloropsis oceanica)
ATGGGAGCGGCGGGTTTTGTGGATATGGAGGCGGTGTTGAGCGTGACGAG
GGGGGAAGCGGATGTATATGTCTCGCAAAGCTTTGAGAGTCGGCCGGTGT
ATGATACAGGGAAGAAAAAAGTGTTGAATTGGACGGCCAGGAGCGAGAAG
AGGGGAAGCGATCACGTATCGTTACCTCGCACCTTGTTCCCTGCATGTCA
TGAGGATTGCTATTTTGTCATAGGCGTATTAGGGAAGAGTGTGGTGCCGA
AGGCGAGATTCTCTTTAGTGGTTCGACGAGAAGATAGCATCGTAGCCTTG
CAAGACGGGGTGGCGTTGAGGGACGAAGTAGCAGATGATGAATATGTGCA
TTTTTCGGTGAAGGTCACTGATCCTGATGCGGACCTGAGCATTCATTTAA
CACCTCTGAGTGGGGATCCTGATTTGTTTGTGGATGCATTTCCCAACACA
CGACCTACCAAGGGTAACCATACGTGGGCTAGTCAGTCGTTTGGCTCCGA
CACACTGACCTTACAGGCCGCAGATATGAAGACACACTGCATGCCGAACC
CTGCCGTAGGCTTGATATGCGATTATTTCGTATCGGTTTTTGGGTGGGAG
AATGCGTCGTTTTCGATCTTGGCTTCGCTCCATCGGGGATGGACGGAACC
CACTCAGCTTTTCCCTGGCTTGCCTCAGGCGGGGGAGGTGAGTCAGGGTG
AGTACGCATATTACTCTTTCTATGTGCCCCCGGATACACTTAGCTTGAGG
TTCGTTTTGACACCACAGAACCTGGCGGGAGGGGGCAAGGGGGGAGGCGA
GGATGTGGATGGTTGGGATAGCTGGTCCGATGCATGGGAGGACCTGCCAG
ACCAAGATTTGTTTTTGACGACTTCCCGAGAGAAAGAACCAGGCGAAGCG
AATTTTGACTTGCGGAGTATGACGTGGGCAGGGGTAGAGGAGATCACGTA
TGCTAAGGAGGAGATGGTGAAGGGAGGGGGGGAGGAACAGGCTTTCTGCA
CGGACTGCACGGTTTACTTGGCGGTGTATGGATATGCGGGTGTGGGTGCG
TATACTTTGAGGGTAGAGACGGGCGTGTCGACGCTCCAGAATGCGGTACC
TGCCACGGGGCATCTTTCGGGTGATGGGACTGCATATTATACGATTTATA
GTGATGATCCCAAAGCGCACGTGCTTTTGTCTTTGGTCACTTTATCGGGA
GATGCGGATTTGTATGTGCTTGCTGCGAAGTACGAGGACGAGGATGAAGG
CGAGGACGAGGAAGGGGGGGGGGGAAGCCGCGGTTTTGGCCGAGCAAGGA
CCATTATCATTGGAAGAGCAATCGGGTGGGGGACGATGTAG
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Synonyms
Publications