NO04G03700.1, NO04G03700.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G03700.1
Unique NameNO04G03700.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length864
Alignment locationchr4:1002417..1004281 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1002417..1004281 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G03700.1 vs.
Match: EWM28716.1 (h aca ribonucleoprotein complex subunit 2-like protein [Nannochloropsis gaditana])

HSP 1 Score: 235.3 bits (599), Expect = 2.300e-58
Identity = 125/145 (86.21%), Postives = 134/145 (92.41%), Query Frame = 0 
Query:  143 MSDDEG--TKKGAKSYEDRLKAVSIISKPLAGKKLTKKLYKLVKKASSAKNVKRGVKEVVKGLKKGEKGICLIAGDIYPVDVISHLAVLCEEKDTPYIYVPSKHDLGSAAAVKRPTSCVLVSNKDAGKEEKETYAKMVLEIKEAS 286
            MSDDE    KKG K+YEDRLKAVS+IS PLAGKKLTKKLYKLVKKAS++K+VKRGVKEVVKGLKKGEKGICLIAGDIYP+DVISHLAVLCEEKDTPYIYVPSKHDLGSAAAVKRPTSCVLVS K + K++KE YAKM LEIKEAS
Sbjct:    1 MSDDEKDTAKKGTKTYEDRLKAVSVISNPLAGKKLTKKLYKLVKKASASKSVKRGVKEVVKGLKKGEKGICLIAGDIYPIDVISHLAVLCEEKDTPYIYVPSKHDLGSAAAVKRPTSCVLVSVKGSEKDQKELYAKMALEIKEAS 145
The following BLAST results are available for this feature:
BLAST of NO04G03700.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28716.12.300e-5886.21h aca ribonucleoprotein complex subunit 2-like pro... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G03700NO04G03700Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G03700.1NO04G03700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G03700.1.cds1NO04G03700.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03700.1.cds2NO04G03700.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03700.1.cds3NO04G03700.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G03700.1 ID=NO04G03700.1|Name=NO04G03700.1|organism=Nannochloropsis oceanica|type=mRNA|length=864bp
ATGCGATTCGCCAGCTGGGAAGCGGACCTCAAATGTTCTGTCCAATTTGT
TTCGTCCCATGTGATAGCCACGGCACGGCAAATCTCTCCCCTGCAATACT
CGAAAGGGACACTGGTGGGCCACTGCGATGTTGTGGCCAAGCTATGCACT
CTGCCTTTGCTGTGGTGCGCCTCTTGCGCAAGAGAGAGAAGCACATCAGG
CTGCAAAGCAGATGGAGATGTGGGAAGTGCGATGAGGAAGGATGGCAATT
TCGTGCAGCACGCACGAAGCCTGCAACAGGCCGGCGCCAAGCATCAATGG
GGGTTACAGGATTTCGATTTACTGGTGTGTGTATGGGATTCAGTAAATTT
TGTGCCGATGCTTGCGGCGTCTAGAAGTTCCCGAAAACTCAAGAGCAGCA
GAAGAGTCTGCAGTCGCACCGGGAACATGAGCGACGACGAGGGCACGAAG
AAAGGCGCCAAATCCTACGAAGACCGGTTAAAAGCTGTCAGTATCATCTC
CAAGCCTCTGGCCGGTAAGAAATTGACCAAGAAACTTTACAAGCTCGTAA
AAAAAGCCTCGTCCGCCAAGAACGTTAAACGCGGCGTCAAGGAAGTGGTA
AAAGGACTCAAGAAGGGCGAGAAAGGCATCTGTCTCATCGCGGGGGACAT
CTACCCGGTCGACGTCATAAGCCACCTGGCAGTCTTGTGTGAGGAGAAAG
ACACCCCCTATATTTACGTACCGTCCAAGCATGACCTGGGCAGTGCAGCG
GCAGTGAAGCGACCAACAAGTTGTGTGTTGGTGAGCAATAAAGATGCAGG
AAAGGAGGAGAAAGAAACGTATGCCAAGATGGTGCTCGAGATAAAGGAGG
CGTCGACTGCGTGA
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protein sequence of NO04G03700.1

>NO04G03700.1-protein ID=NO04G03700.1-protein|Name=NO04G03700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=288bp
MRFASWEADLKCSVQFVSSHVIATARQISPLQYSKGTLVGHCDVVAKLCT
LPLLWCASCARERSTSGCKADGDVGSAMRKDGNFVQHARSLQQAGAKHQW
GLQDFDLLVCVWDSVNFVPMLAASRSSRKLKSSRRVCSRTGNMSDDEGTK
KGAKSYEDRLKAVSIISKPLAGKKLTKKLYKLVKKASSAKNVKRGVKEVV
KGLKKGEKGICLIAGDIYPVDVISHLAVLCEEKDTPYIYVPSKHDLGSAA
AVKRPTSCVLVSNKDAGKEEKETYAKMVLEIKEASTA*
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mRNA from alignment at chr4:1002417..1004281+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G03700.1 ID=NO04G03700.1|Name=NO04G03700.1|organism=Nannochloropsis oceanica|type=mRNA|length=1865bp|location=Sequence derived from alignment at chr4:1002417..1004281+ (Nannochloropsis oceanica)
ATGCGATTCGCCAGCTGGGAAGCGGACCTCAAATGTTCTGTCCAATTTGT
TTCGTCCCATGTGATAGCCACGGCACGGCAAATCTCTCCCCTGCAATACT
CGAAAGGGACACTGGTGGGCCACTGCGATGTTGTGGCCAAGCTATGCACT
CTGCCTTTGCTGTGGTGCGCCTCTTGCGCAAGAGAGAGAAGCACATCAGG
CTGCAAAGCAGATGGAGATGTGGGAAGTGCGATGAGGAAGGATGGCAATT
TCGTGCAGCACGCACGAAGCCTGCAACAGGCCGGCGCCAAGCATCAATGG
GGGTTACAGGATTTCGATTTACTGGTGTGTGTATGGGATTCAGTAAATTT
TGTGCCGATGCTTGCGGCGTCTAGAAGTTCCCGAAAAGTAAAGTAAGTTC
CCTCACCTTCCATATGGGCATCTGTATGTTCTGTTACCTCACACGAAGTC
ACTTTTATGCTGGGTGGGGGGGGGGGCAGCATTTTAGCTACAAATGAATC
TGAAAATTGACTCAAGCAATCATTGACCGCTTTTTGTAAACCTTGTTCAG
TAAAGAGACTCTCCGGACAAGGTTTACCTTGAGGTATACCATCCATCACA
CGACGCATGCCGACGGGAGAAAAACTCGGCACATCTCGGATATCAATCAA
TGGACCCCAGCTATTTTTTTTCTTTTGCCACTTACTTGCCATGTCACCCT
TTCACCACAATCTTACAGCTCAAGAGCAGCAGAAGAGTCTGCAGTCGCAC
CGGGAACATGAGCGACGACGAGGGCACGAAGAAAGGGTACGTTTGTTCTT
GCACAGCCTCCCCACCCATCCAAGTATACCCTGCCTTCTCGCAATGCATC
CACCTTCTCTATGCCCTGTCGTTGTGGGCTCTTGTTCGCCTCGCCTTTAG
CATACCCTGTTTGAGAGTCTGGCGCGGCGCAGCAAGAATTATAGGCTGTG
AGCAGAGTTTGGCCTGTGCTCACACCAACCCGCACTTGGTACTCCCTGCC
TCGGCCTCTTAACTCGGCCGCCGTGTGCCACGTTTTCCCCAAAATTCAGA
GCCACTATAATGACAAGGCTTTGCGTTCCTCAGAGATCAGGATAAATCAC
TTGAGCACAAGCATGCTTTCGACAAAATGTCGCCCAGTCGTCGTCTCAAA
GTACAACCTCTCCTATCAGCAACGCCCTTGACTCATTTCATTCACACAAT
CGCCCTTCTTGGAATGCAATCATGTCTTTGCATGAATAAATGGTGACCTA
TTCAAGGCCAATATCATTGGCACGCGAACTCTGTGAATCCCACTCCGCTT
ACCTTTCTTCCCCTATCCACTCCCCAAAACAAAGCAGAGCCATGACCCAC
GAAGACATAGTGCTGATAACGTTTCCCCTCCTAACTCTCCCTTCCCGCGC
TCACCATCTCTCACATACGCCACCATCCATCCCTCATCCCTCCACCTAAC
CAACAGCGCCAAATCCTACGAAGACCGGTTAAAAGCTGTCAGTATCATCT
CCAAGCCTCTGGCCGGTAAGAAATTGACCAAGAAACTTTACAAGCTCGTA
AAAAAAGCCTCGTCCGCCAAGAACGTTAAACGCGGCGTCAAGGAAGTGGT
AAAAGGACTCAAGAAGGGCGAGAAAGGCATCTGTCTCATCGCGGGGGACA
TCTACCCGGTCGACGTCATAAGCCACCTGGCAGTCTTGTGTGAGGAGAAA
GACACCCCCTATATTTACGTACCGTCCAAGCATGACCTGGGCAGTGCAGC
GGCAGTGAAGCGACCAACAAGTTGTGTGTTGGTGAGCAATAAAGATGCAG
GAAAGGAGGAGAAAGAAACGTATGCCAAGATGGTGCTCGAGATAAAGGAG
GCGTCGACTGCGTGA
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Coding sequence (CDS) from alignment at chr4:1002417..1004281+

>NO04G03700.1 ID=NO04G03700.1|Name=NO04G03700.1|organism=Nannochloropsis oceanica|type=CDS|length=864bp|location=Sequence derived from alignment at chr4:1002417..1004281+ (Nannochloropsis oceanica)
ATGCGATTCGCCAGCTGGGAAGCGGACCTCAAATGTTCTGTCCAATTTGT
TTCGTCCCATGTGATAGCCACGGCACGGCAAATCTCTCCCCTGCAATACT
CGAAAGGGACACTGGTGGGCCACTGCGATGTTGTGGCCAAGCTATGCACT
CTGCCTTTGCTGTGGTGCGCCTCTTGCGCAAGAGAGAGAAGCACATCAGG
CTGCAAAGCAGATGGAGATGTGGGAAGTGCGATGAGGAAGGATGGCAATT
TCGTGCAGCACGCACGAAGCCTGCAACAGGCCGGCGCCAAGCATCAATGG
GGGTTACAGGATTTCGATTTACTGGTGTGTGTATGGGATTCAGTAAATTT
TGTGCCGATGCTTGCGGCGTCTAGAAGTTCCCGAAAACTCAAGAGCAGCA
GAAGAGTCTGCAGTCGCACCGGGAACATGAGCGACGACGAGGGCACGAAG
AAAGGCGCCAAATCCTACGAAGACCGGTTAAAAGCTGTCAGTATCATCTC
CAAGCCTCTGGCCGGTAAGAAATTGACCAAGAAACTTTACAAGCTCGTAA
AAAAAGCCTCGTCCGCCAAGAACGTTAAACGCGGCGTCAAGGAAGTGGTA
AAAGGACTCAAGAAGGGCGAGAAAGGCATCTGTCTCATCGCGGGGGACAT
CTACCCGGTCGACGTCATAAGCCACCTGGCAGTCTTGTGTGAGGAGAAAG
ACACCCCCTATATTTACGTACCGTCCAAGCATGACCTGGGCAGTGCAGCG
GCAGTGAAGCGACCAACAAGTTGTGTGTTGGTGAGCAATAAAGATGCAGG
AAAGGAGGAGAAAGAAACGTATGCCAAGATGGTGCTCGAGATAAAGGAGG
CGTCGACTGCGTGA
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Synonyms
Publications