NO04G03700, NO04G03700 (gene) Nannochloropsis oceanica

Overview
NameNO04G03700
Unique NameNO04G03700
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1865
Alignment locationchr4:1002417..1004281 +

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Properties
Property NameValue
DescriptionH aca ribonucleoprotein complex subunit 2-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1002417..1004281 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005730nucleolus
GO:0005730nucleolus
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR029064L30e-like
IPR004038Ribosomal_L7Ae/L30e/S12e/Gad45
IPR018492Ribosomal_L7Ae/L8/Nhp2
IPR002415H/ACA_rnp_Nhp2_euk
Homology
[Close]
BLAST of NO04G03700 vs. NCBI_GenBank
Match: EWM28716.1 (h aca ribonucleoprotein complex subunit 2-like protein [Nannochloropsis gaditana])

HSP 1 Score: 170.6 bits (431), Expect = 7.000e-39
Identity = 123/145 (84.83%), Postives = 129/145 (88.97%), Query Frame = 0 
Query:  143 MSDDE--GTKKGAKSYEDRLKAVSIISKPLAGKKLTKKLYXXXXXXXXXXXXXXXXXXXXXXXXXXXXGICLIAGDIYPVDVISHLAVLCEEKDTPYIYVPSKHDLGSAAAVKRPTSCVLVSNKDAGKEEKETYAKMVLEIKEAS 286
            MSDDE    KKG K+YEDRLKAVS+IS PLAGKKL     XXXXXXXXXXXXXXXXXXXXXXXXXXXXGICLIAGDIYP+DVISHLAVLCEEKDTPYIYVPSKHDLGSAAAVKRPTSCVLVS K + K++KE YAKM LEIKEAS
Sbjct:    1 MSDDEKDTAKKGTKTYEDRLKAVSVISNPLAGKKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGICLIAGDIYPIDVISHLAVLCEEKDTPYIYVPSKHDLGSAAAVKRPTSCVLVSVKGSEKDQKELYAKMALEIKEAS 145
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BLAST of NO04G03700 vs. NCBI_GenBank
Match: OWZ10794.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd4 [Phytophthora megakarya])

HSP 1 Score: 119.8 bits (299), Expect = 1.400e-23
Identity = 91/141 (64.54%), Postives = 114/141 (80.85%), Query Frame = 0 
Query:  143 MSDDEGTKKGAKSYEDRLKAVSIISKPLAGKKLTKKLYXXXXXXXXXXXXXXXXXXXXXXXXXXXXGICLIAGDIYPVDVISHLAVLCEEKDTPYIYVPSKHDLGSAAAVKRPTSCVLVSNKDAGKEEKETYAKMVLEIKE 284
            MSD E +KK   +YE+R+K VS+I+KPLA KK TK+ Y XXXXXXXXXXXXXXXXXXXXXXXXXXXG+C+IAGDI PVDVISH+ VLCEE D PYI+ PSK DLG++A  KRPTSC+L++   AG   +E Y +++ ++K+
Sbjct:    1 MSDVESSKK--HNYEERVKHVSVIAKPLANKKQTKRAYKXXXXXXXXXXXXXXXXXXXXXXXXXXXGVCIIAGDISPVDVISHIPVLCEENDIPYIFTPSKVDLGASALSKRPTSCILITPNKAGFNAQEAYDELLEDVKK 139
[Close]
BLAST of NO04G03700 vs. NCBI_GenBank
Match: GAX12666.1 (H/ACA ribonucleoprotein complex subunit 2 [Fistulifera solaris])

HSP 1 Score: 119.4 bits (298), Expect = 1.800e-23
Identity = 62/139 (44.60%), Postives = 85/139 (61.15%), Query Frame = 0 
Query:  145 DDEGTKKGAKSYEDRLKAVSIISKPLAGKKLTKKLYXXXXXXXXXXXXXXXXXXXXXXXXXXXXGICLIAGDIYPVDVISHLAVLCEEKDTPYIYVPSKHDLGSAAAVKRPTSCVLVSNKDAGKEEKETYAKMVLEIKE 284
            D+E TK   K+YE+RL+AV++IS+PLA KK TKK +                            G+ ++AGDIYP+DVISHL +L EEK+ PYI+VPSKHDLG+AA+ KRPTSCVL+       + ++ +  +  E KE
Sbjct:    6 DEEETKTVGKTYEERLEAVNVISQPLASKKSTKKAHKLVKKAAASKHVRRGVKEVVKGLRKGETGLAILAGDIYPIDVISHLPILLEEKNIPYIFVPSKHDLGAAASTKRPTSCVLIRTPKKSFDGQDLFDALTKEAKE 144
[Close]
BLAST of NO04G03700 vs. NCBI_GenBank
Match: XP_009522872.1 (hypothetical protein PHYSODRAFT_496342 [Phytophthora sojae] >EGZ20155.1 hypothetical protein PHYSODRAFT_496342 [Phytophthora sojae])

HSP 1 Score: 119.0 bits (297), Expect = 2.400e-23
Identity = 90/141 (63.83%), Postives = 112/141 (79.43%), Query Frame = 0 
Query:  143 MSDDEGTKKGAKSYEDRLKAVSIISKPLAGKKLTKKLYXXXXXXXXXXXXXXXXXXXXXXXXXXXXGICLIAGDIYPVDVISHLAVLCEEKDTPYIYVPSKHDLGSAAAVKRPTSCVLVSNKDAGKEEKETYAKMVLEIKE 284
            MSD E +KK + SYE+R+K VS+I+KPLA KK      XXXXXXXXXXXXXXXXXXXXXXXXXXXXG+C+IAGDI PVDVISH+ VLCEE D PYI+ PSK DLG++A  KRPTSC+L++   AG   +E Y +++ ++K+
Sbjct:    1 MSDTESSKKSSSSYEERVKHVSVIAKPLATKKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVCIIAGDISPVDVISHIPVLCEENDIPYIFTPSKVDLGASALSKRPTSCILITPNKAGFNAQEAYDELLADVKQ 141
[Close]
BLAST of NO04G03700 vs. NCBI_GenBank
Match: GAX27760.1 (H/ACA ribonucleoprotein complex subunit 2 [Fistulifera solaris])

HSP 1 Score: 118.2 bits (295), Expect = 4.100e-23
Identity = 63/139 (45.32%), Postives = 84/139 (60.43%), Query Frame = 0 
Query:  145 DDEGTKKGAKSYEDRLKAVSIISKPLAGKKLTKKLYXXXXXXXXXXXXXXXXXXXXXXXXXXXXGICLIAGDIYPVDVISHLAVLCEEKDTPYIYVPSKHDLGSAAAVKRPTSCVLVSNKDAGKEEKETYAKMVLEIKE 284
            D+E  K   K+YE+RL+AV++IS+PLA KK TKK +                            G+ ++AGDIYPVDVISHL VL EEK+ PYI+VPSKHDLG+AA+ KRPTSCVL+       + ++ +  +  E KE
Sbjct:    6 DEEEAKTVGKTYEERLEAVNVISQPLASKKSTKKAHKLVKKAAASKHVRRGVKEVVKGLRKGETGLAILAGDIYPVDVISHLPVLLEEKNIPYIFVPSKHDLGAAASTKRPTSCVLIRTPKKSFDGQDLFDALAKEAKE 144
[Close]
BLAST of NO04G03700 vs. NCBI_GenBank
Match: POM71053.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd4 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 117.9 bits (294), Expect = 5.300e-23
Identity = 91/141 (64.54%), Postives = 114/141 (80.85%), Query Frame = 0 
Query:  143 MSDDEGTKKGAKSYEDRLKAVSIISKPLAGKKLTKKLYXXXXXXXXXXXXXXXXXXXXXXXXXXXXGICLIAGDIYPVDVISHLAVLCEEKDTPYIYVPSKHDLGSAAAVKRPTSCVLVSNKDAGKEEKETYAKMVLEIKE 284
            MSD E +KK   +YE+R+K VS+I+KPLA KK TK+  XXXXXXXXXXXXXXXXXXXXXXXXXXXXG+C+IAGDI PVDVISH+ VLCEE D PYI+ PSK DLG++A  KRPTSC+L++   AG   +E Y +++ ++K+
Sbjct:    1 MSDTESSKK--NNYEERVKHVSVIAKPLASKKQTKRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVCIIAGDISPVDVISHIPVLCEENDIPYIFTPSKVDLGASALSKRPTSCILITPNKAGFNAQEAYDELLEDVKK 139
[Close]
BLAST of NO04G03700 vs. NCBI_GenBank
Match: XP_008901963.1 (hypothetical protein PPTG_08962 [Phytophthora parasitica INRA-310] >ETI52144.1 hypothetical protein F443_04663 [Phytophthora parasitica P1569] >ETK92032.1 hypothetical protein L915_04548 [Phytophthora parasitica] >ETL45414.1 hypothetical protein L916_04502 [Phytophthora parasitica] >ETL98593.1 hypothetical protein L917_04381 [Phytophthora parasitica] >ETM51760.1 hypothetical protein L914_04482 [Phytophthora parasitica] >ETN12959.1 hypothetical protein PPTG_08962 [Phytophthora parasitica INRA-310] >ETO80918.1 hypothetical protein F444_04694 [Phytophthora parasitica P1976] >ETP21946.1 hypothetical protein F441_04650 [Phytophthora parasitica CJ01A1] >ETP49851.1 hypothetical protein F442_04711 [Phytophthora parasitica P10297] >KUF88578.1 H/ACA ribonucleoprotein complex subunit 2 [Phytophthora nicotianae])

HSP 1 Score: 117.5 bits (293), Expect = 7.000e-23
Identity = 92/142 (64.79%), Postives = 113/142 (79.58%), Query Frame = 0 
Query:  143 MSDDEGTKKGAKS-YEDRLKAVSIISKPLAGKKLTKKLYXXXXXXXXXXXXXXXXXXXXXXXXXXXXGICLIAGDIYPVDVISHLAVLCEEKDTPYIYVPSKHDLGSAAAVKRPTSCVLVSNKDAGKEEKETYAKMVLEIKE 284
            MSD E +KK + S YE+R+K VS+I+KPLA KK T    XXXXXXXXXXXXXXXXXXXXXXXXXXXXG+C+IAGDI PVDVISH+ VLCEE D PYI+ PSK DLG++A  KRPTSC+L++   AG   KE Y +++ ++K+
Sbjct:    1 MSDTENSKKSSSSNYEERVKHVSVIAKPLATKKQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVCIIAGDISPVDVISHIPVLCEENDIPYIFTPSKVDLGASALSKRPTSCILITPNKAGFNAKEAYDELLEDVKQ 142
[Close]
BLAST of NO04G03700 vs. NCBI_GenBank
Match: GAY05132.1 (ribosomal protein L7Ae/L30e/S12e/Gadd4 putative [Pythium insidiosum])

HSP 1 Score: 117.5 bits (293), Expect = 7.000e-23
Identity = 80/129 (62.02%), Postives = 99/129 (76.74%), Query Frame = 0 
Query:  143 MSDDEGTKKGAKSYEDRLKAVSIISKPLAGKKLTKKLYXXXXXXXXXXXXXXXXXXXXXXXXXXXXGICLIAGDIYPVDVISHLAVLCEEKDTPYIYVPSKHDLGSAAAVKRPTSCVLVSNKDAGKEEK 272
            MSD E  KK   SYEDR+K +S+I+KPLA KK TK++Y  XXXXXXXXXXXXXXXXXXXX      G+C+IAGDI PVDV+SH+ VLCEE D PYI+ PSK DLG++A  KRPTSC+L++   +G + +
Sbjct:    1 MSDVEDNKKSGPSYEDRVKHISVIAKPLASKKHTKRVYKVXXXXXXXXXXXXXXXXXXXXLRKGEKGLCVIAGDISPVDVVSHIPVLCEEHDIPYIFTPSKVDLGASALSKRPTSCILITPNKSGFQRR 129
[Close]
BLAST of NO04G03700 vs. NCBI_GenBank
Match: XP_008880626.1 (hypothetical protein H310_14525 [Aphanomyces invadans] >ETV90736.1 hypothetical protein H310_14525 [Aphanomyces invadans])

HSP 1 Score: 117.1 bits (292), Expect = 9.100e-23
Identity = 62/141 (43.97%), Postives = 87/141 (61.70%), Query Frame = 0 
Query:  143 MSDDEGTKKGAKSYEDRLKAVSIISKPLAGKKLTKKLYXXXXXXXXXXXXXXXXXXXXXXXXXXXXGICLIAGDIYPVDVISHLAVLCEEKDTPYIYVPSKHDLGSAAAVKRPTSCVLVSNKDAGKEEKETYAKMVLEIKE 284
            MSD E   KG  +YE+R+K VS+I++PLA KKLTKKLY                            G+C+IAGDI P+DVISH+ VLCE  D  Y++ PSK DLG++A+ KRPTSC++++    G   +ETY +++ E+K+
Sbjct:    1 MSDTEEVAKGV-TYEERVKHVSVIAQPLAVKKLTKKLYKLVKKSTKVKCTKRGVKEVVKAIRKGEKGLCVIAGDISPIDVISHIPVLCESNDISYVFTPSKVDLGASASSKRPTSCIMITPGKHGFNVQETYDELLAEVKK 140
[Close]
BLAST of NO04G03700 vs. NCBI_GenBank
Match: XP_024580844.1 (nhp2p [Plasmopara halstedii] >CEG44475.1 nhp2p [Plasmopara halstedii])

HSP 1 Score: 117.1 bits (292), Expect = 9.100e-23
Identity = 92/142 (64.79%), Postives = 113/142 (79.58%), Query Frame = 0 
Query:  143 MSDDEGTKKGAKS-YEDRLKAVSIISKPLAGKKLTKKLYXXXXXXXXXXXXXXXXXXXXXXXXXXXXGICLIAGDIYPVDVISHLAVLCEEKDTPYIYVPSKHDLGSAAAVKRPTSCVLVSNKDAGKEEKETYAKMVLEIKE 284
            MSD E +KK + S YEDR+K +S+I+KPLA KK TK+  XXXXXXXXXXXXXXXXXXXXXXXXXXXX  C+IAGDI PVDVISH+ VLCEE D PYI+ PSK DLG++A  KRPTSC+L++   AG   KE Y +++ ++K+
Sbjct:    1 MSDMESSKKRSSSNYEDRVKHISVIAKPLASKKQTKRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCIIAGDISPVDVISHIPVLCEENDIPYIFTPSKVDLGASALSKRPTSCILITPDKAGFNAKEVYDELLKDVKQ 142
The following BLAST results are available for this feature:
BLAST of NO04G03700 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28716.17.000e-3984.83h aca ribonucleoprotein complex subunit 2-like pro... [more]
OWZ10794.11.400e-2364.54Ribosomal protein L7Ae/L30e/S12e/Gadd4 [Phytophtho... [more]
GAX12666.11.800e-2344.60H/ACA ribonucleoprotein complex subunit 2 [Fistuli... [more]
XP_009522872.12.400e-2363.83hypothetical protein PHYSODRAFT_496342 [Phytophtho... [more]
GAX27760.14.100e-2345.32H/ACA ribonucleoprotein complex subunit 2 [Fistuli... [more]
POM71053.15.300e-2364.54Ribosomal protein L7Ae/L30e/S12e/Gadd4 [Phytophtho... [more]
XP_008901963.17.000e-2364.79hypothetical protein PPTG_08962 [Phytophthora para... [more]
GAY05132.17.000e-2362.02ribosomal protein L7Ae/L30e/S12e/Gadd4 putative [P... [more]
XP_008880626.19.100e-2343.97hypothetical protein H310_14525 [Aphanomyces invad... [more]
XP_024580844.19.100e-2364.79nhp2p [Plasmopara halstedii] >CEG44475.1 nhp2p [Pl... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009433NSK009433Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G03700.1NO04G03700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579263gene_2152Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100002g100gene1833Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G03700.1NO04G03700.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G03700 ID=NO04G03700|Name=NO04G03700|organism=Nannochloropsis oceanica|type=gene|length=1865bp
ATGCGATTCGCCAGCTGGGAAGCGGACCTCAAATGTTCTGTCCAATTTGT
TTCGTCCCATGTGATAGCCACGGCACGGCAAATCTCTCCCCTGCAATACT
CGAAAGGGACACTGGTGGGCCACTGCGATGTTGTGGCCAAGCTATGCACT
CTGCCTTTGCTGTGGTGCGCCTCTTGCGCAAGAGAGAGAAGCACATCAGG
CTGCAAAGCAGATGGAGATGTGGGAAGTGCGATGAGGAAGGATGGCAATT
TCGTGCAGCACGCACGAAGCCTGCAACAGGCCGGCGCCAAGCATCAATGG
GGGTTACAGGATTTCGATTTACTGGTGTGTGTATGGGATTCAGTAAATTT
TGTGCCGATGCTTGCGGCGTCTAGAAGTTCCCGAAAAgtaaagtaagttc
cctcaccttccatatgggcatctgtatgttctgttacctcacacgaagtc
acttttatgctgggtgggggggggggcagcattttagctacaaatgaatc
tgaaaattgactcaagcaatcattgaccgctttttgtaaaccttgttcag
taaagagactctccggacaaggtttaccttgaggtataccatccatcaca
cgacgcatgccgacgggagaaaaactcggcacatctcggatatcaatcaa
tggaccccagctattttttttcttttgccacttacttgccatgtcaccct
ttcaccacaatcttacagCTCAAGAGCAGCAGAAGAGTCTGCAGTCGCAC
CGGGAACATGAGCGACGACGAGGGCACGAAGAAAGGgtacgtttgttctt
gcacagcctccccacccatccaagtataccctgccttctcgcaatgcatc
caccttctctatgccctgtcgttgtgggctcttgttcgcctcgcctttag
cataccctgtttgagagtctggcgcggcgcagcaagaattataggctgtg
agcagagtttggcctgtgctcacaccaacccgcacttggtactccctgcc
tcggcctcttaactcggccgccgtgtgccacgttttccccaaaattcaga
gccactataatgacaaggctttgcgttcctcagagatcaggataaatcac
ttgagcacaagcatgctttcgacaaaatgtcgcccagtcgtcgtctcaaa
gtacaacctctcctatcagcaacgcccttgactcatttcattcacacaat
cgcccttcttggaatgcaatcatgtctttgcatgaataaatggtgaccta
ttcaaggccaatatcattggcacgcgaactctgtgaatcccactccgctt
acctttcttcccctatccactccccaaaacaaagcagagccatgacccac
gaagacatagtgctgataacgtttcccctcctaactctcccttcccgcgc
tcaccatctctcacatacgccaccatccatccctcatccctccacctaac
caacagCGCCAAATCCTACGAAGACCGGTTAAAAGCTGTCAGTATCATCT
CCAAGCCTCTGGCCGGTAAGAAATTGACCAAGAAACTTTACAAGCTCGTA
AAAAAAGCCTCGTCCGCCAAGAACGTTAAACGCGGCGTCAAGGAAGTGGT
AAAAGGACTCAAGAAGGGCGAGAAAGGCATCTGTCTCATCGCGGGGGACA
TCTACCCGGTCGACGTCATAAGCCACCTGGCAGTCTTGTGTGAGGAGAAA
GACACCCCCTATATTTACGTACCGTCCAAGCATGACCTGGGCAGTGCAGC
GGCAGTGAAGCGACCAACAAGTTGTGTGTTGGTGAGCAATAAAGATGCAG
GAAAGGAGGAGAAAGAAACGTATGCCAAGATGGTGCTCGAGATAAAGGAG
GCGTCGACTGCGTGA
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protein sequence of NO04G03700.1

>NO04G03700.1-protein ID=NO04G03700.1-protein|Name=NO04G03700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=288bp
MRFASWEADLKCSVQFVSSHVIATARQISPLQYSKGTLVGHCDVVAKLCT
LPLLWCASCARERSTSGCKADGDVGSAMRKDGNFVQHARSLQQAGAKHQW
GLQDFDLLVCVWDSVNFVPMLAASRSSRKLKSSRRVCSRTGNMSDDEGTK
KGAKSYEDRLKAVSIISKPLAGKKLTKKLYKLVKKASSAKNVKRGVKEVV
KGLKKGEKGICLIAGDIYPVDVISHLAVLCEEKDTPYIYVPSKHDLGSAA
AVKRPTSCVLVSNKDAGKEEKETYAKMVLEIKEASTA*
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Synonyms
Publications