NO04G03570.1, NO04G03570.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G03570.1
Unique NameNO04G03570.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1209
Alignment locationchr4:969562..971223 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:969562..971223 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G03570.1 vs.
Match: XP_005856008.1 (ubiquitin thioesterase OTU1, partial [Nannochloropsis gaditana CCMP526]; EKU20356.1 ubiquitin thioesterase OTU1, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 531.9 bits (1369), Expect = 1.700e-147
Identity = 259/365 (70.96%), Postives = 304/365 (83.29%), Query Frame = 0 
Query:   38 SMPLTLKINGPEGKSVVLKGLDDGLTLQQLKDKVQETFGVPGVEQKLRASFPPKDVVMQDETALVTALGIQSGSAITVVREAANESASVAAAAVTITSAVRQLMDMGFPAAVAAKALEMAHNDVGGALELCIGGVVTEESLGSAPAPPPSVPVSTHGGMSTANRVMIRRVVDADNSCLFNAIGYCMEKDRKLGTKLRRIIADCVRNRPDVYTEATLGKTPKEYSDWIQDPTQWGGEIELFVLSQYYGCEIVAVEIKSVHAYVYGEGKNYSRRIYVLYDGVHYDALAMAAGSPTAPESLDMTQFPAGDEGTKDAALAVAAQLKQERQFVDMAGFTLRCLTCMKGLSGQEEAKAHAAATRHQNFGEY 403
            SMPLTLK+NGP GKS +LKGL D  TLQQL+ K++E  GVP  +QKLRA FPPKD+ +QD TA +T+LGIQ+GSAITVV+E    ++   A         +Q++DMGF  AVA KALE++H +V  AL+LC+ G++T+ESL   P  PP VPV++HGGM+TANRVM+RRV+DADNSCLFNA+GYCMEK+R++G KLR+IIADCVRN PDVYTEA LGK PK+YSDWIQDP QWGGEIELF+LSQYYGCE+VA+EIKS HAYVYGEGKNYSRRIY+LYDGVHYDALAMAAGSPTAPESLDMTQFPAGDE +K AALAVAA+LK+ RQFVD+ G TLRC+ C KGLSGQEEA  HA  T HQNFGEY
Sbjct:    1 SMPLTLKVNGPGGKSAILKGLKDSATLQQLQIKIEELLGVPMAQQKLRAGFPPKDMTLQDLTAELTSLGIQTGSAITVVKEDTQVTSGDKAPIPVTLPGAQQIIDMGFSVAVALKALEVSHGEVENALDLCVNGIITDESLEHVPTAPP-VPVTSHGGMTTANRVMVRRVIDADNSCLFNAVGYCMEKNRRIGPKLRKIIADCVRNSPDVYTEAVLGKAPKQYSDWIQDPAQWGGEIELFILSQYYGCEVVAIEIKSAHAYVYGEGKNYSRRIYLLYDGVHYDALAMAAGSPTAPESLDMTQFPAGDESSKQAALAVAAELKEGRQFVDLLGCTLRCMVCNKGLSGQEEALLHARETNHQNFGEY 364
The following BLAST results are available for this feature:
BLAST of NO04G03570.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005856008.11.700e-14770.96ubiquitin thioesterase OTU1, partial [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G03570NO04G03570Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G03570.1NO04G03570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G03570.1.cds1NO04G03570.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03570.1.cds2NO04G03570.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03570.1.cds3NO04G03570.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03570.1.cds4NO04G03570.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G03570.1 ID=NO04G03570.1|Name=NO04G03570.1|organism=Nannochloropsis oceanica|type=mRNA|length=1209bp
ATGGCTGTATGTCTTAGTCGCGTGCTGTGTCCACGCTCGACATACAATAC
ACAGATACAGACATACACACACACACACAGCAGCAGCAGCAGCAACAGCA
GCAGTAGCAACAGCATGCCATTGACCCTGAAGATCAATGGTCCGGAGGGC
AAGAGCGTCGTGCTTAAGGGCTTGGATGACGGGCTGACCCTGCAGCAACT
CAAGGACAAAGTACAGGAAACCTTCGGCGTGCCGGGGGTGGAGCAGAAGC
TTAGGGCCAGCTTCCCGCCCAAAGATGTTGTCATGCAAGATGAGACCGCC
TTGGTGACGGCCTTGGGGATTCAGTCTGGGAGCGCCATCACTGTTGTGCG
GGAGGCGGCAAATGAGTCTGCATCTGTTGCTGCCGCTGCTGTCACCATTA
CCTCGGCAGTGCGACAGCTGATGGACATGGGCTTTCCTGCTGCCGTGGCT
GCCAAGGCGCTGGAAATGGCACACAACGACGTTGGGGGTGCATTGGAGCT
TTGCATTGGTGGGGTAGTGACGGAGGAATCCTTGGGGTCTGCGCCTGCCC
CGCCTCCTTCTGTGCCGGTATCGACTCATGGGGGGATGAGCACCGCGAAT
CGGGTGATGATTCGGCGGGTGGTGGATGCGGACAACAGTTGTTTGTTCAA
TGCCATTGGGTATTGCATGGAGAAGGATCGGAAGTTGGGAACGAAGCTCA
GGAGGATTATTGCTGATTGTGTGAGGAACCGCCCGGACGTGTATACTGAG
GCAACGCTGGGCAAGACGCCGAAGGAGTACTCGGATTGGATTCAGGACCC
AACGCAATGGGGAGGAGAAATCGAGCTCTTTGTCCTCTCTCAGTACTACG
GCTGCGAAATTGTGGCGGTGGAGATCAAGAGCGTCCATGCCTATGTGTAT
GGGGAAGGGAAGAATTACTCAAGGCGGATCTATGTGTTATATGATGGGGT
GCATTATGATGCCCTTGCCATGGCTGCGGGCTCGCCCACCGCGCCTGAGT
CGCTCGACATGACTCAGTTTCCTGCCGGCGACGAGGGGACGAAGGACGCA
GCGTTGGCGGTGGCGGCCCAATTGAAGCAGGAGAGGCAATTTGTTGATAT
GGCTGGGTTTACGTTGAGATGCTTAACGTGTATGAAGGGACTTTCAGGGC
AGGAGGAGGCGAAAGCCCATGCCGCGGCGACACGACATCAAAATTTCGGG
GAGTACTAG
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protein sequence of NO04G03570.1

>NO04G03570.1-protein ID=NO04G03570.1-protein|Name=NO04G03570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=403bp
MAVCLSRVLCPRSTYNTQIQTYTHTHSSSSSNSSSSNSMPLTLKINGPEG
KSVVLKGLDDGLTLQQLKDKVQETFGVPGVEQKLRASFPPKDVVMQDETA
LVTALGIQSGSAITVVREAANESASVAAAAVTITSAVRQLMDMGFPAAVA
AKALEMAHNDVGGALELCIGGVVTEESLGSAPAPPPSVPVSTHGGMSTAN
RVMIRRVVDADNSCLFNAIGYCMEKDRKLGTKLRRIIADCVRNRPDVYTE
ATLGKTPKEYSDWIQDPTQWGGEIELFVLSQYYGCEIVAVEIKSVHAYVY
GEGKNYSRRIYVLYDGVHYDALAMAAGSPTAPESLDMTQFPAGDEGTKDA
ALAVAAQLKQERQFVDMAGFTLRCLTCMKGLSGQEEAKAHAAATRHQNFG
EY*
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mRNA from alignment at chr4:969562..971223+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G03570.1 ID=NO04G03570.1|Name=NO04G03570.1|organism=Nannochloropsis oceanica|type=mRNA|length=1662bp|location=Sequence derived from alignment at chr4:969562..971223+ (Nannochloropsis oceanica)
ATGGCTGTATGTCTTAGTCGCGTGCTGTGTGAGTTAGATTGCTCGCAATT
GTGGGAGGAAAAGGAAAGGAAACATTTCGCCGCACGCCATCAATAATAAT
TAGGGGGTGTGTTCAACTCCGCGCCGTAAATAGCAGCCACTCTTACATAA
TTATTTAAGAGCTCTATCGCCCGCAAAAAACTTGAATGCGCTTTAAGCTT
TCAAGCGTTTCACCCACGCGCCGCCTACCCCATTTTTACTTCACAAACGA
CCACACGCACATGGAACTCACAGCGATCTCGATGAGAACGTGGTTGTATC
TCTGAGGTCCACGCTCGACATACAATGTGAGTCCACAAATGAGAGCGCAC
CCACACACAGTCAAAGCTATGCTCATTCCCATTGCATTCCACCACAGACA
CAGATACAGACATACACACACACACACAGCAGCAGCAGCAGCAACAGCAG
CAGTAGCAACAGCATGCCATTGACCCTGAAGATCAATGGTCCGGAGGGCA
AGAGCGTCGTGCTTAAGGGCTTGGATGACGGGCTGACCCTGCAGCAACTC
AAGGACAAAGTACAGGAAACCTTCGGCGTGCCGGGGGTGGAGCAGAAGCT
TAGGGCCAGCTTCCCGCCCAAAGATGTTGTCATGCAAGATGAGACCGCCT
TGGTGACGGCCTTGGGGATTCAGTCTGGGAGCGCCATCACTGTTGTGCGG
GAGGCGGCAAATGAGTCTGCATCTGTTGCTGCCGCTGCTGTCACCATTAC
CTCGGCAGTGCGACAGCTGATGGACATGGGCTTTCCTGCTGCCGTGGCTG
CCAAGGCGCTGGAAATGGCACACAACGACGTTGGGGGTGCATTGGAGCTT
TGCATTGGTGGGGTAGTGACGGAGGAATCCTTGGGGTCTGCGCCTGCCCC
GCCTCCTTCTGTGCCGGTATCGACTCATGGGGGGATGAGCACCGCGAATC
GGGTGATGATTCGGCGGGTGGTGGATGCGGACAACAGTTGTTTGTTCAAT
GCCATTGGGTATTGCATGGAGAAGGATCGGAAGTTGGGAACGAAGCTCAG
GAGGATTATTGCTGATTGTGTGAGGAACCGCCCGGACGTGTATACTGAGG
CAACGCTGGGCAAGACGCCGAAGGAGTACTCGGATTGGATTCAGGTAGGA
TGCGCGCCAGGGAGGTAGGGAGGGGGAAAGAGGAAAGTGGATAAAGGAAG
TAACGGGACTCAATTTTACCTGTCTTTTTCCTGTCACATTTCTGTCAGGA
CCCAACGCAATGGGGAGGAGAAATCGAGCTCTTTGTCCTCTCTCAGTACT
ACGGCTGCGAAATTGTGGCGGTGGAGATCAAGAGCGTCCATGCCTATGTG
TATGGGGAAGGGAAGAATTACTCAAGGCGGATCTATGTGTTATATGATGG
GGTGCATTATGATGCCCTTGCCATGGCTGCGGGCTCGCCCACCGCGCCTG
AGTCGCTCGACATGACTCAGTTTCCTGCCGGCGACGAGGGGACGAAGGAC
GCAGCGTTGGCGGTGGCGGCCCAATTGAAGCAGGAGAGGCAATTTGTTGA
TATGGCTGGGTTTACGTTGAGATGCTTAACGTGTATGAAGGGACTTTCAG
GGCAGGAGGAGGCGAAAGCCCATGCCGCGGCGACACGACATCAAAATTTC
GGGGAGTACTAG
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Coding sequence (CDS) from alignment at chr4:969562..971223+

>NO04G03570.1 ID=NO04G03570.1|Name=NO04G03570.1|organism=Nannochloropsis oceanica|type=CDS|length=1209bp|location=Sequence derived from alignment at chr4:969562..971223+ (Nannochloropsis oceanica)
ATGGCTGTATGTCTTAGTCGCGTGCTGTGTCCACGCTCGACATACAATAC
ACAGATACAGACATACACACACACACACAGCAGCAGCAGCAGCAACAGCA
GCAGTAGCAACAGCATGCCATTGACCCTGAAGATCAATGGTCCGGAGGGC
AAGAGCGTCGTGCTTAAGGGCTTGGATGACGGGCTGACCCTGCAGCAACT
CAAGGACAAAGTACAGGAAACCTTCGGCGTGCCGGGGGTGGAGCAGAAGC
TTAGGGCCAGCTTCCCGCCCAAAGATGTTGTCATGCAAGATGAGACCGCC
TTGGTGACGGCCTTGGGGATTCAGTCTGGGAGCGCCATCACTGTTGTGCG
GGAGGCGGCAAATGAGTCTGCATCTGTTGCTGCCGCTGCTGTCACCATTA
CCTCGGCAGTGCGACAGCTGATGGACATGGGCTTTCCTGCTGCCGTGGCT
GCCAAGGCGCTGGAAATGGCACACAACGACGTTGGGGGTGCATTGGAGCT
TTGCATTGGTGGGGTAGTGACGGAGGAATCCTTGGGGTCTGCGCCTGCCC
CGCCTCCTTCTGTGCCGGTATCGACTCATGGGGGGATGAGCACCGCGAAT
CGGGTGATGATTCGGCGGGTGGTGGATGCGGACAACAGTTGTTTGTTCAA
TGCCATTGGGTATTGCATGGAGAAGGATCGGAAGTTGGGAACGAAGCTCA
GGAGGATTATTGCTGATTGTGTGAGGAACCGCCCGGACGTGTATACTGAG
GCAACGCTGGGCAAGACGCCGAAGGAGTACTCGGATTGGATTCAGGACCC
AACGCAATGGGGAGGAGAAATCGAGCTCTTTGTCCTCTCTCAGTACTACG
GCTGCGAAATTGTGGCGGTGGAGATCAAGAGCGTCCATGCCTATGTGTAT
GGGGAAGGGAAGAATTACTCAAGGCGGATCTATGTGTTATATGATGGGGT
GCATTATGATGCCCTTGCCATGGCTGCGGGCTCGCCCACCGCGCCTGAGT
CGCTCGACATGACTCAGTTTCCTGCCGGCGACGAGGGGACGAAGGACGCA
GCGTTGGCGGTGGCGGCCCAATTGAAGCAGGAGAGGCAATTTGTTGATAT
GGCTGGGTTTACGTTGAGATGCTTAACGTGTATGAAGGGACTTTCAGGGC
AGGAGGAGGCGAAAGCCCATGCCGCGGCGACACGACATCAAAATTTCGGG
GAGTACTAG
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Synonyms
Publications