NO04G03400.1, NO04G03400.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G03400.1
Unique NameNO04G03400.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1503
Alignment locationchr4:935032..936825 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:935032..936825 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G03400.1 vs.
Match: XP_005855879.1 (hypothetical protein NGA_2005520, partial [Nannochloropsis gaditana CCMP526]; XP_005856003.1 hypothetical protein NGA_2005510, partial [Nannochloropsis gaditana CCMP526]; EKU20351.1 hypothetical protein NGA_2005510, partial [Nannochloropsis gaditana CCMP526]; EKU20472.1 hypothetical protein NGA_2005520, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 410.2 bits (1053), Expect = 9.100e-111
Identity = 251/415 (60.48%), Postives = 298/415 (71.81%), Query Frame = 0 
Query:   90 MTLLHLTVLMTVMALPMGCTFISSLPANHVHLRTLSAGTVARRPGAGLSLQSDFCLVITGDARLR--HLRLLAEETSEDSSAGEEAGGARRKQVMRKKRVRKDRQAIGGRASSTEADEAPVPLDPLLKKAQEDIMSREFDRTLVIEEFSAPRVVDRRR-PTPAEVAAAVAANAAADDDNDDDEDEEGEEGEMKEGN----AVRGRKKIQFQGVAAEAAAAAVKEWTGVPENLRYDPTFELPIPSETVVSLSDIATKFDDAIMTDQAKSLPTLAELGKKAKGSILKRQQEEEEKVAKELEPLDDYDLSAAILGEGRPVLGIGLPYLQSCHTVVILVTLLCAFVEFPGFPLTNFPYELREFLKQGLIVIYAINAVLAWDSIKEAKKREQSVFFWALKCFVLGALAHNELLSIRVKPQ 498
            ++L  +T LM V+A+     F+SS PA +   R+   G V R+      + + F   + G        +RL AEE S++     E  G RR++V+RKKRVRKDR   GG AS  EA EA  P+DP LK+AQEDIM REFDR LV+EEF+ PRV DR R PTP+ V A                D + E+GE +EGN    A + R+K Q +   ++   AA+   +GVPENLRYDPT ELPIPSETVVSLSD+ATKFD AI T +  +LPTLAELGKKAK SIL+RQ EEEEK  KELEP+DDYDLS+AILGEGRPVLGIGLPYLQSCHTV+ILV+LLCAF+EFPGFPLTNFPYELR+FLKQGL+ +Y INAVLAWDSIKEA+KR+QSVFFWALKCFVLGALAHNELL IR KPQ
Sbjct:    6 ISLFQITSLMAVVAVHPVAAFVSSKPAFNFRSRSFY-GIVNRQ-----EITTPFRANLVGPVNPSPCRVRLKAEEASKEP----EGDGGRRRKVIRKKRVRKDRSQEGGAAS--EAGEASPPMDPRLKQAQEDIMRREFDRELVLEEFATPRVKDRVRIPTPSAVVA----------------DRQLEKGE-REGNGRYEAKQDRQKEQNE--RSDTLDAAIN--SGVPENLRYDPTLELPIPSETVVSLSDLATKFDAAIET-KGTALPTLAELGKKAKVSILRRQLEEEEKATKELEPIDDYDLSSAILGEGRPVLGIGLPYLQSCHTVIILVSLLCAFIEFPGFPLTNFPYELRDFLKQGLVAVYLINAVLAWDSIKEARKRDQSVFFWALKCFVLGALAHNELLLIREKPQ 386
The following BLAST results are available for this feature:
BLAST of NO04G03400.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855879.19.100e-11160.48hypothetical protein NGA_2005520, partial [Nannoch... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G03400NO04G03400Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G03400.1NO04G03400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G03400.1.cds1NO04G03400.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03400.1.cds2NO04G03400.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G03400.1.cds3NO04G03400.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G03400.1 ID=NO04G03400.1|Name=NO04G03400.1|organism=Nannochloropsis oceanica|type=mRNA|length=1503bp
ATGAGGGCTCACCCACCTCAGACTTGTCCGTGGTTATTGGGCCACCAGCA
GGCACAGGTGGCTTCTCCTGCTCCATCCTTCCGTGAATTGGAACCTGTCG
CAAACGCACTCATTTTGCTCATTGTCGTCCCCCCTGGCCCCCACCCCCAA
GGCAGACCAAGAAGCACGCAGGTGTACCTTCGACTAGACGAGGGGCGAAC
CGACATCCTGGAAGTTTTAAGACGTAACAGCAGCACACAGCACCTGTCGG
CTATGCCATCATTACTCATGACCCTCCTGCACCTTACGGTGCTCATGACC
GTCATGGCCCTCCCTATGGGTTGCACCTTTATTTCCTCGTTGCCAGCCAA
TCATGTACATTTGCGCACTCTATCAGCGGGCACAGTCGCTCGACGACCGG
GAGCAGGCCTGTCTCTTCAGTCTGATTTTTGTCTCGTCATCACGGGGGAT
GCACGACTCCGCCATTTACGCTTACTGGCGGAGGAAACATCGGAGGATAG
CAGTGCTGGAGAGGAGGCTGGCGGGGCACGACGCAAGCAAGTAATGAGGA
AAAAGCGCGTGCGCAAGGACCGACAAGCAATTGGGGGCCGTGCCTCATCT
ACAGAGGCGGATGAGGCCCCAGTGCCCCTAGACCCACTCCTAAAGAAAGC
CCAAGAAGATATCATGAGCAGAGAATTCGATCGAACGCTGGTGATTGAGG
AGTTTTCCGCCCCCCGTGTCGTTGACCGTAGAAGGCCGACCCCTGCTGAG
GTGGCTGCGGCAGTGGCTGCTAATGCTGCAGCTGACGACGATAATGACGA
CGATGAAGATGAAGAAGGAGAGGAGGGCGAGATGAAAGAAGGAAATGCGG
TTCGCGGGCGAAAGAAGATACAATTTCAAGGTGTGGCGGCGGAAGCCGCG
GCTGCTGCCGTGAAGGAGTGGACGGGCGTGCCGGAGAACCTGAGGTACGA
TCCGACTTTTGAATTGCCTATCCCTTCGGAGACGGTGGTGTCACTCTCGG
ATATAGCCACCAAATTCGACGATGCCATTATGACTGATCAAGCAAAGTCT
TTGCCGACTCTGGCGGAGCTGGGCAAGAAGGCAAAGGGGTCGATTTTGAA
GCGGCAACAAGAGGAGGAGGAGAAGGTGGCAAAGGAGCTAGAGCCTCTTG
ATGATTACGATTTAAGCGCAGCCATTTTGGGAGAGGGTCGACCTGTCTTA
GGCATTGGTTTACCTTATTTGCAGAGTTGCCACACTGTTGTTATTCTTGT
GACGTTGCTTTGTGCGTTTGTGGAGTTCCCTGGGTTTCCCTTGACCAATT
TTCCTTATGAGCTGCGGGAGTTCCTGAAGCAGGGGTTGATAGTGATCTAT
GCTATTAATGCCGTTTTGGCGTGGGATAGCATCAAGGAGGCAAAGAAACG
GGAGCAGAGTGTATTCTTTTGGGCGCTGAAGTGCTTTGTGCTGGGTGCGT
TGGCACATAATGAACTGTTATCGATCAGGGTAAAGCCCCAAGCATCCAGC
TGA
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protein sequence of NO04G03400.1

>NO04G03400.1-protein ID=NO04G03400.1-protein|Name=NO04G03400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=501bp
MRAHPPQTCPWLLGHQQAQVASPAPSFRELEPVANALILLIVVPPGPHPQ
GRPRSTQVYLRLDEGRTDILEVLRRNSSTQHLSAMPSLLMTLLHLTVLMT
VMALPMGCTFISSLPANHVHLRTLSAGTVARRPGAGLSLQSDFCLVITGD
ARLRHLRLLAEETSEDSSAGEEAGGARRKQVMRKKRVRKDRQAIGGRASS
TEADEAPVPLDPLLKKAQEDIMSREFDRTLVIEEFSAPRVVDRRRPTPAE
VAAAVAANAAADDDNDDDEDEEGEEGEMKEGNAVRGRKKIQFQGVAAEAA
AAAVKEWTGVPENLRYDPTFELPIPSETVVSLSDIATKFDDAIMTDQAKS
LPTLAELGKKAKGSILKRQQEEEEKVAKELEPLDDYDLSAAILGEGRPVL
GIGLPYLQSCHTVVILVTLLCAFVEFPGFPLTNFPYELREFLKQGLIVIY
AINAVLAWDSIKEAKKREQSVFFWALKCFVLGALAHNELLSIRVKPQASS
*
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mRNA from alignment at chr4:935032..936825-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G03400.1 ID=NO04G03400.1|Name=NO04G03400.1|organism=Nannochloropsis oceanica|type=mRNA|length=1794bp|location=Sequence derived from alignment at chr4:935032..936825- (Nannochloropsis oceanica)
ATGAGGGCTCACCCACCTCAGACTTGTCCGTGGTTATTGGGCCACCAGCA
GGCACAGGTGGCTTCTCCTGCTCCATCCTTCCGTGAATTGGAACCTGTGT
AGGATTTCGTGTTGTGAGGTATGGAGTACAGTAGAGGAGGAGAAGCAGCT
GTGGCAGCTTGCATCATAATCGTCACAAGAAGCACATGTCTTGTACCAAT
GCTATAATATCCTTTTGCTGAAGCTTAACTCAATCCTGCTGTGGTCCATG
TAGGCTTACAGCGCAAACGCACTCATTTTGCTCATTGTCGTCCCCCCTGG
CCCCCACCCCCAAGGCAGACCAAGAAGCACGCAGGTGTACCTTCGACTAG
ACGAGGGGCGAACCGACATCCTGGAAGTTTTAAGACGTAACAGCAGCACA
CAGGTAAGGTAGAAAGGATCATCACCATTTCTATATTTCCTTCGGATGCC
TATCCTTCTCGTTCCTCTCCGGGAGGACTGCAACTGGGAAGCTAACTGCA
TCTAAACCCCCCTTCAACTCCCACTCAACAGCACCTGTCGGCTATGCCAT
CATTACTCATGACCCTCCTGCACCTTACGGTGCTCATGACCGTCATGGCC
CTCCCTATGGGTTGCACCTTTATTTCCTCGTTGCCAGCCAATCATGTACA
TTTGCGCACTCTATCAGCGGGCACAGTCGCTCGACGACCGGGAGCAGGCC
TGTCTCTTCAGTCTGATTTTTGTCTCGTCATCACGGGGGATGCACGACTC
CGCCATTTACGCTTACTGGCGGAGGAAACATCGGAGGATAGCAGTGCTGG
AGAGGAGGCTGGCGGGGCACGACGCAAGCAAGTAATGAGGAAAAAGCGCG
TGCGCAAGGACCGACAAGCAATTGGGGGCCGTGCCTCATCTACAGAGGCG
GATGAGGCCCCAGTGCCCCTAGACCCACTCCTAAAGAAAGCCCAAGAAGA
TATCATGAGCAGAGAATTCGATCGAACGCTGGTGATTGAGGAGTTTTCCG
CCCCCCGTGTCGTTGACCGTAGAAGGCCGACCCCTGCTGAGGTGGCTGCG
GCAGTGGCTGCTAATGCTGCAGCTGACGACGATAATGACGACGATGAAGA
TGAAGAAGGAGAGGAGGGCGAGATGAAAGAAGGAAATGCGGTTCGCGGGC
GAAAGAAGATACAATTTCAAGGTGTGGCGGCGGAAGCCGCGGCTGCTGCC
GTGAAGGAGTGGACGGGCGTGCCGGAGAACCTGAGGTACGATCCGACTTT
TGAATTGCCTATCCCTTCGGAGACGGTGGTGTCACTCTCGGATATAGCCA
CCAAATTCGACGATGCCATTATGACTGATCAAGCAAAGTCTTTGCCGACT
CTGGCGGAGCTGGGCAAGAAGGCAAAGGGGTCGATTTTGAAGCGGCAACA
AGAGGAGGAGGAGAAGGTGGCAAAGGAGCTAGAGCCTCTTGATGATTACG
ATTTAAGCGCAGCCATTTTGGGAGAGGGTCGACCTGTCTTAGGCATTGGT
TTACCTTATTTGCAGAGTTGCCACACTGTTGTTATTCTTGTGACGTTGCT
TTGTGCGTTTGTGGAGTTCCCTGGGTTTCCCTTGACCAATTTTCCTTATG
AGCTGCGGGAGTTCCTGAAGCAGGGGTTGATAGTGATCTATGCTATTAAT
GCCGTTTTGGCGTGGGATAGCATCAAGGAGGCAAAGAAACGGGAGCAGAG
TGTATTCTTTTGGGCGCTGAAGTGCTTTGTGCTGGGTGCGTTGGCACATA
ATGAACTGTTATCGATCAGGGTAAAGCCCCAAGCATCCAGCTGA
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Coding sequence (CDS) from alignment at chr4:935032..936825-

>NO04G03400.1 ID=NO04G03400.1|Name=NO04G03400.1|organism=Nannochloropsis oceanica|type=CDS|length=1503bp|location=Sequence derived from alignment at chr4:935032..936825- (Nannochloropsis oceanica)
ATGAGGGCTCACCCACCTCAGACTTGTCCGTGGTTATTGGGCCACCAGCA
GGCACAGGTGGCTTCTCCTGCTCCATCCTTCCGTGAATTGGAACCTGTCG
CAAACGCACTCATTTTGCTCATTGTCGTCCCCCCTGGCCCCCACCCCCAA
GGCAGACCAAGAAGCACGCAGGTGTACCTTCGACTAGACGAGGGGCGAAC
CGACATCCTGGAAGTTTTAAGACGTAACAGCAGCACACAGCACCTGTCGG
CTATGCCATCATTACTCATGACCCTCCTGCACCTTACGGTGCTCATGACC
GTCATGGCCCTCCCTATGGGTTGCACCTTTATTTCCTCGTTGCCAGCCAA
TCATGTACATTTGCGCACTCTATCAGCGGGCACAGTCGCTCGACGACCGG
GAGCAGGCCTGTCTCTTCAGTCTGATTTTTGTCTCGTCATCACGGGGGAT
GCACGACTCCGCCATTTACGCTTACTGGCGGAGGAAACATCGGAGGATAG
CAGTGCTGGAGAGGAGGCTGGCGGGGCACGACGCAAGCAAGTAATGAGGA
AAAAGCGCGTGCGCAAGGACCGACAAGCAATTGGGGGCCGTGCCTCATCT
ACAGAGGCGGATGAGGCCCCAGTGCCCCTAGACCCACTCCTAAAGAAAGC
CCAAGAAGATATCATGAGCAGAGAATTCGATCGAACGCTGGTGATTGAGG
AGTTTTCCGCCCCCCGTGTCGTTGACCGTAGAAGGCCGACCCCTGCTGAG
GTGGCTGCGGCAGTGGCTGCTAATGCTGCAGCTGACGACGATAATGACGA
CGATGAAGATGAAGAAGGAGAGGAGGGCGAGATGAAAGAAGGAAATGCGG
TTCGCGGGCGAAAGAAGATACAATTTCAAGGTGTGGCGGCGGAAGCCGCG
GCTGCTGCCGTGAAGGAGTGGACGGGCGTGCCGGAGAACCTGAGGTACGA
TCCGACTTTTGAATTGCCTATCCCTTCGGAGACGGTGGTGTCACTCTCGG
ATATAGCCACCAAATTCGACGATGCCATTATGACTGATCAAGCAAAGTCT
TTGCCGACTCTGGCGGAGCTGGGCAAGAAGGCAAAGGGGTCGATTTTGAA
GCGGCAACAAGAGGAGGAGGAGAAGGTGGCAAAGGAGCTAGAGCCTCTTG
ATGATTACGATTTAAGCGCAGCCATTTTGGGAGAGGGTCGACCTGTCTTA
GGCATTGGTTTACCTTATTTGCAGAGTTGCCACACTGTTGTTATTCTTGT
GACGTTGCTTTGTGCGTTTGTGGAGTTCCCTGGGTTTCCCTTGACCAATT
TTCCTTATGAGCTGCGGGAGTTCCTGAAGCAGGGGTTGATAGTGATCTAT
GCTATTAATGCCGTTTTGGCGTGGGATAGCATCAAGGAGGCAAAGAAACG
GGAGCAGAGTGTATTCTTTTGGGCGCTGAAGTGCTTTGTGCTGGGTGCGT
TGGCACATAATGAACTGTTATCGATCAGGGTAAAGCCCCAAGCATCCAGC
TGA
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Synonyms
Publications