NO04G03230, NO04G03230 (gene) Nannochloropsis oceanica

Overview
NameNO04G03230
Unique NameNO04G03230
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1563
Alignment locationchr4:900411..901973 -

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Properties
Property NameValue
DescriptionPin domain containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:900411..901973 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010298DUF901
Homology
BLAST of NO04G03230 vs. NCBI_GenBank
Match: EWM28811.1 (pin domain containing protein [Nannochloropsis gaditana])

HSP 1 Score: 363.6 bits (932), Expect = 6.800e-97
Identity = 197/268 (73.51%), Postives = 224/268 (83.58%), Query Frame = 0
Query:   90 SRDGVVRYGTKGRKKHRTS-RCRK-SDDGEYCEDS----DECEAPRVSSQINIPVRRQIAFVKQMKKLMKAEERPK-EVAKKVRRKKDSAQREAISGDYARFDQTMCSTYLLVDGYNVINNWSKMIKARSIAGMPSARQALLEQLRYIYHSRRWKVVVAYDEHTPGAELRVMEGDVDEVYTGALDSADSYIERRAVELCKKSAGPRVKVATDDRTIQVVSLASGAEMMSTSSLIKEIYLARRELLFQRDNSDWRSKKAFDDAQEYFID 351
            +R  V  + ++  KK RTS R RK S D E  ++     D+ +APRVSSQINIPVRRQIAFVKQMKK++K EERP   V KK R+KK   QREAI+ DYA F  ++C+TYLLVDGYNVINNW+KMIKARS+AGMPSARQALLEQLRYI+HSRRWKVVVAYDEHTPG+ELR+MEGDVDEV+TG  DSADSYIERRAVELCK     RVKVATDDRTIQVVS+ASGAE MSTSSLI+EIYLARRELLFQRD +DWR+ K+FDDAQEYF+D
Sbjct:   79 TRQQVACFASRASKKRRTSGRIRKESADNERNDEGGIQRDQQDAPRVSSQINIPVRRQIAFVKQMKKIVKEEERPNTAVTKKARKKKVLGQREAIASDYASFKPSVCTTYLLVDGYNVINNWTKMIKARSVAGMPSARQALLEQLRYIHHSRRWKVVVAYDEHTPGSELRIMEGDVDEVFTGERDSADSYIERRAVELCKSGDVLRVKVATDDRTIQVVSMASGAETMSTSSLIREIYLARRELLFQRDGTDWRTTKSFDDAQEYFVD 346          
BLAST of NO04G03230 vs. NCBI_GenBank
Match: WP_041243740.1 (NYN domain-containing protein [Gloeobacter kilaueensis])

HSP 1 Score: 88.6 bits (218), Expect = 4.200e-14
Identity = 52/143 (36.36%), Postives = 82/143 (57.34%), Query Frame = 0
Query:  186 QTMCSTYLLVDGYNVINNWSKMIKARSIAGMPSARQALLEQLRYIYHSRRWKVVVAYDEHTPGAEL--RVMEGDVDEVYTGALDSADSYIERRAVELCKKSAGPRVKVATDDRTIQVVSLASGAEMMSTSSLIKEIYLARREL 327
            +T   T LLVDGYNV+ +W K+++ R    + +AR AL+EQL      R +  V+ +D     + L  +V    ++  +T    +ADS+IE+ + EL ++  G RV VAT DR  Q++ LA GA  +S   L+KE+  AR ++
Sbjct:    2 ETAVQTILLVDGYNVVGSWPKLVRLRDSVSLEAARNALIEQLADFASFRGYYTVLVFDSQLVLSPLARKVETASLEICFTDYEQTADSFIEKFSYELLRE--GRRVMVATSDRAQQLLILAQGAGWLSAQQLLKEVKAARHQM 142          
BLAST of NO04G03230 vs. NCBI_GenBank
Match: WP_011142986.1 (NYN domain-containing protein [Gloeobacter violaceus] >NP_925939.1 hypothetical protein glr2993 [Gloeobacter violaceus PCC 7421] >BAC90934.1 glr2993 [Gloeobacter violaceus PCC 7421])

HSP 1 Score: 87.8 bits (216), Expect = 7.200e-14
Identity = 57/152 (37.50%), Postives = 87/152 (57.24%), Query Frame = 0
Query:  191 TYLLVDGYNVINNWSKMIKARSIAGMPSARQALLEQLRYIYHSRRWKVVVAYDEHTPGAEL-RVMEGDVDEV-YTGALDSADSYIERRAVELCKKSAGPRVKVATDDRTIQVVSLASGAEMMSTSSLIKEIYLARRELLFQRDNSDWRSKKA 341
            T LLVDGYNV+  W ++ + R    + +AR  L+EQL      R ++ V+ +D     + L R  E    EV +T    +ADS+IE+ + +L +++   RV VAT DR  QV+ LA GA+ +S+  L+KE+  ARR+L       D R++KA
Sbjct:    3 TILLVDGYNVVGAWPRLARLRDRHSLEAARNELVEQLAGYASFRGYRAVLVFDAQLVTSPLVRASETPHLEVCFTDYEQTADSFIEQYSYQLLRENRRRRVMVATSDRAQQVLVLAQGADWLSSEQLLKEVEAARRQL-----REDLRNRKA 149          
BLAST of NO04G03230 vs. NCBI_GenBank
Match: GAQ88575.1 (hypothetical protein KFL_004410030 [Klebsormidium nitens])

HSP 1 Score: 87.4 bits (215), Expect = 9.400e-14
Identity = 86/257 (33.46%), Postives = 116/257 (45.14%), Query Frame = 0
Query:   87 ACNSRDGVVRYGTKGRKKHRTSRCRKSDDGEYCEDSDECEAPRVSSQINIPVRRQIAFVKQMKKLMK-AEERPKEVAKKVRRKKD--SAQREAISGDYARFDQTMCS-----------TYLLVDGYNVINNWSKMIKARSIAGMPSARQALLEQLRYIYHSRRWKVVVAYDEHTPGAELRVMEGDVDEVYTGALDSADSYIERRAVELCKKSAGPRVKVATDDRTIQVVSLASGAEMMSTSSLIKEIYLARRELLFQ 330
            +C  R G +  G K   K       KSD      D  +   PRVS+ INIPVR Q+ +VK +K+  K A   P   A   RRKK+  S      SGD      ++               LLVDGYN+   W K+ K  S   + +AR  L+ +L+     +  KVVV +D    G +         +V   A D+ADS+IER A  L  K     V V T D   Q ++   GA + S   LI+EI  AR+E+L Q
Sbjct:  124 SCRRRRGRITCGAKKGAKGGGDEGPKSD-----TDGRQSTPPRVSTNINIPVRYQLRYVKALKEYQKNASGPPVRQATGYRRKKERPSESSGVASGDVVAPSTSLMGQGVMEELNLEPPVLLVDGYNMCGYWPKLKKHFSKGDLEAARAKLIVELQTYGACKGIKVVVVFDAQKSGLQSHSEGDKYLKVVYSADDTADSWIEREAKNLHDK-GNHNVWVVTSDLAQQSMAYGVGATVWSCGLLIQEINQARKEMLKQ 374          
BLAST of NO04G03230 vs. NCBI_GenBank
Match: AGY57298.1 (hypothetical protein GKIL_1052 [Gloeobacter kilaueensis JS1])

HSP 1 Score: 86.7 bits (213), Expect = 1.600e-13
Identity = 51/138 (36.96%), Postives = 80/138 (57.97%), Query Frame = 0
Query:  191 TYLLVDGYNVINNWSKMIKARSIAGMPSARQALLEQLRYIYHSRRWKVVVAYDEHTPGAEL--RVMEGDVDEVYTGALDSADSYIERRAVELCKKSAGPRVKVATDDRTIQVVSLASGAEMMSTSSLIKEIYLARREL 327
            T LLVDGYNV+ +W K+++ R    + +AR AL+EQL      R +  V+ +D     + L  +V    ++  +T    +ADS+IE+ + EL ++  G RV VAT DR  Q++ LA GA  +S   L+KE+  AR ++
Sbjct:    3 TILLVDGYNVVGSWPKLVRLRDSVSLEAARNALIEQLADFASFRGYYTVLVFDSQLVLSPLARKVETASLEICFTDYEQTADSFIEKFSYELLRE--GRRVMVATSDRAQQLLILAQGAGWLSAQQLLKEVKAARHQM 138          
BLAST of NO04G03230 vs. NCBI_GenBank
Match: CBJ31618.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 83.2 bits (204), Expect = 1.800e-12
Identity = 61/188 (32.45%), Postives = 97/188 (51.60%), Query Frame = 0
Query:  148 MKKLMKAEERPKE-VAKKVRRKKDSAQREAIS-GDYARFDQTMCSTYLLVDGYNVINNWSKMIKARSIAGMPSARQALLEQLRYIYHSRRWKVVVAYDEHTPGAELR--VMEGDVDEVYTGALDSADSYIERRAVELCKKSAGPRVKVATDDRTIQVVSLASGAEMMSTSSLIKEIYLARRELLFQRD 332
            M+K M+    PK+ V  K RR K++   + +   D +       +  L+VDGYN+I +WSK         +  AR+ L+E+L  +   R W V V +D +      R  V   ++D V+T   +SAD Y+ER   +L K S  P V VAT D+ +Q + + +GAE+ S   +I+EI ++  E +   D
Sbjct:    1 MRKSMERSNGPKKMVHNKYRRVKNTDYEDIVEPEDLSHIYMPDIAPALMVDGYNIIFHWSKCSIVADNGDLEGARRILVEELDTLAAMRGWTVTVVFDAYKRKGRARKYVTPNEIDVVFTSNGESADMYVERLTEQL-KDSGCPNVMVATGDKLMQSLVVGAGAEVFSPDRIIEEIEISHSEAVAYTD 187          
BLAST of NO04G03230 vs. NCBI_GenBank
Match: WP_035381815.1 (NYN domain-containing protein [Fervidicella metallireducens] >EYE87222.1 tetracycline resistance protein [Fervidicella metallireducens AeB])

HSP 1 Score: 77.8 bits (190), Expect = 7.500e-11
Identity = 47/137 (34.31%), Postives = 77/137 (56.20%), Query Frame = 0
Query:  192 YLLVDGYNVINNWSKMIKARSIAGMPSARQALLEQLRYIYHSRRWKVVVAYDEH-TPGAELR-VMEGDVDEVYTGALDSADSYIERRAVELCKKSAGPRVKVATDDRTIQVVSLASGAEMMSTSSLIKEIYLARREL 327
            YL VDGYN+IN+W K +K      +  AR  L++ LR     +  K++V +D H   G+ ++ + +G++D V+T   ++AD YIER   EL +K+    V VAT D   Q + L  G   ++ + L+ EI L + ++
Sbjct:    6 YLFVDGYNIINSW-KELKVLKDENLEDARDKLVDMLREFAAYKGIKIIVVFDAHMVKGSSVKHIKQGEIDVVFTKEQETADCYIERNVAELSRKN---EVYVATSDYLEQRIVLQMGGIRITPAELLNEISLTKTKI 138          
BLAST of NO04G03230 vs. NCBI_GenBank
Match: XP_005824212.1 (hypothetical protein GUITHDRAFT_145185 [Guillardia theta CCMP2712] >EKX37232.1 hypothetical protein GUITHDRAFT_145185 [Guillardia theta CCMP2712])

HSP 1 Score: 76.6 bits (187), Expect = 1.700e-10
Identity = 66/233 (28.33%), Postives = 113/233 (48.50%), Query Frame = 0
Query:  111 RKSDDGEYCEDSDECEAPRVSSQINIPVRRQIAFVKQMKKLMKAEERPKEVAKKVRR-------KKDSAQREAISGDYARFDQTMCSTYLLVDGYNVINNWSKMIKARSIAGMPSARQALLEQLRYIYHSRRWKVVVAYDE--HTPG---AELRVMEGDVDEVYTGALDSADSYIERRAVELC--KKSAG---PRVKVATDDRTIQVVSLASGAEMMSTSSLIKEIYLARREL 327
            ++   GE  +  +   +PR+ S I I ++ Q+  VK  +++ +A  +      K RR       K+D    E +S  +AR D         VDGYNVI  W+K+ K R    +  AR  L +++    H R  +  + YD   +T G    +  +    V+ VY    +SAD+YI+ R  E+   K+  G   P+V + + DR I  ++   GA ++S++  I+EI  A++E+
Sbjct:   45 KQGSSGEASDGGEGRMSPRIRSDIGISMKTQLKIVKAYREMERASTK-MVTRTKFRRAKASGPGKEDEMGPEVLSNIWARED---VPPIFFVDGYNVIGQWNKLKKKRDNGDISGARDVLYDEISQFAHYRGCQCTIVYDAVGYTAGLPITQAEMTRAGVEVVYVRD-ESADTYIQARTAEISTWKEKDGIKPPKVYMCSSDRAISDIATGHGALVLSSALFIQEIKRAKKEM 272          
BLAST of NO04G03230 vs. NCBI_GenBank
Match: WP_068871315.1 (NYN domain-containing protein [Planococcus plakortidis] >ANU20897.1 hypothetical protein BBI15_12200 [Planococcus plakortidis])

HSP 1 Score: 76.6 bits (187), Expect = 1.700e-10
Identity = 51/155 (32.90%), Postives = 80/155 (51.61%), Query Frame = 0
Query:  193 LLVDGYNVINNWSKMIKARSIAGMPSARQALLEQLRYIYHSRRWKVVVAYDEH-TPGAELRVMEGDVDEVYTGALDSADSYIERRAVELCKKSAGPRVKVATDDRTIQVVSLASGAEMMSTSSLIKEIYLARRELLFQRDNSDWRSKKAFDDAQE 347
            LLVDGYN+I +W + +KA     +  AR  L+E++      + W+V+V +D H  PG E + +  DV+ ++T + ++AD  IE+ A  L   S   ++ VAT D T Q V  A GA           + ++ REL  + +  D R  K   + QE
Sbjct:    4 LLVDGYNIIGDWEE-LKALKKERLADARDKLIERMAEYQGFKGWRVIVVFDAHLVPGIEAKNLHSDVEVIFTRSSETADERIEKLAASL--NSRRDQIYVATSDSTEQWVIFAKGA-----------LRISARELEIEMEEIDKRIAKKVREIQE 144          
BLAST of NO04G03230 vs. NCBI_GenBank
Match: WP_058382189.1 (NYN domain-containing protein [Planococcus rifietoensis] >ALS75485.1 hypothetical protein AUC31_09770 [Planococcus rifietoensis])

HSP 1 Score: 76.3 bits (186), Expect = 2.200e-10
Identity = 49/155 (31.61%), Postives = 81/155 (52.26%), Query Frame = 0
Query:  193 LLVDGYNVINNWSKMIKARSIAGMPSARQALLEQLRYIYHSRRWKVVVAYDEH-TPGAELRVMEGDVDEVYTGALDSADSYIERRAVELCKKSAGPRVKVATDDRTIQVVSLASGAEMMSTSSLIKEIYLARRELLFQRDNSDWRSKKAFDDAQE 347
            LLVDGYN+I +W+++   +    +  AR  L+E++      + W+V+V +D H  PG E + +  DV+ ++T + ++AD  IE+ A+ L   S   ++ VAT D T Q V  A GA           + ++ REL  + +  D R  K   + QE
Sbjct:    4 LLVDGYNIIGDWAELTALKK-ERLADARDRLIERMAEYQGFKGWRVIVVFDAHLVPGIEAKNLHSDVEVIFTRSSETADERIEKLAISL--NSRRDQIYVATSDSTEQWVIFAKGA-----------LRISARELEIEMEEIDKRIAKKVREIQE 144          
The following BLAST results are available for this feature:
BLAST of NO04G03230 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28811.16.800e-9773.51pin domain containing protein [Nannochloropsis gad... [more]
WP_041243740.14.200e-1436.36NYN domain-containing protein [Gloeobacter kilauee... [more]
WP_011142986.17.200e-1437.50NYN domain-containing protein [Gloeobacter violace... [more]
GAQ88575.19.400e-1433.46hypothetical protein KFL_004410030 [Klebsormidium ... [more]
AGY57298.11.600e-1336.96hypothetical protein GKIL_1052 [Gloeobacter kilaue... [more]
CBJ31618.11.800e-1232.45conserved unknown protein [Ectocarpus siliculosus][more]
WP_035381815.17.500e-1134.31NYN domain-containing protein [Fervidicella metall... [more]
XP_005824212.11.700e-1028.33hypothetical protein GUITHDRAFT_145185 [Guillardia... [more]
WP_068871315.11.700e-1032.90NYN domain-containing protein [Planococcus plakort... [more]
WP_058382189.12.200e-1031.61NYN domain-containing protein [Planococcus rifieto... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL076nonsL076Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR106ngnoR106Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009471NSK009471Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G03230.1NO04G03230.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|538222gene_2098Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100002g65gene1865Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G03230.1NO04G03230.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G03230 ID=NO04G03230|Name=NO04G03230|organism=Nannochloropsis oceanica|type=gene|length=1563bp
ACAGCTTCCCTGCCACTTCACACCTCCCGCACCTGCAACGCGACGGAAAC
ACCACGTCGTTTTCCCCGATCGACGCAATCGATTTCTATTTTGCCTTACT
TCTGCAATTCAATGGGTCAAAGCGAGCCGTGAAAGGCAGCCAAGAGATGC
GTTGGCAGCACTATTCTGGTGACCGTCAGCGGGTCCCGCTTCTTCGTCTG
CCGCTAACCGTGCTCCTCCTTACGCTCCTCGGCCTCTGCCCCCTCAAATG
TTTTGCGGCCGCTGCCACGTCAAGATCACGCATCGGAGATTACCGGGGGG
CTTCGCTGGCGTTTACGCCGGTCTTTACTGCGTCCGTAAATGTATGGTGC
CGTTCGATACAACGTAGCAGCCAGCTTGCTGTCTGCAGCACCTGTCCGCT
TCTGGCATGCAACAGCCGCGATGGGGTGGTGCGATATGGAACCAAGGGTA
GAAAGAAGCATCGGACGAGTCGGTGCAGGAAAAGTGACGATGGCGAATAC
TGCGAAGACAGTGATGAGTGTGAGGCTCCGCGCGTCTCGTCTCAAATCAA
TATCCCAGTCAGACGGCAGATAGCGTTTGTTAAGCAAATGAAAAAGCTCA
TGAAAGCTGAGGAGAGACCCAAAGAAGTGGCAAAGAAAGTGCGCCGCAAA
AAGGATTCGGCACAGCGAGAGGCAATTTCAGGCGATTATGCACGTTTTGA
CCAGACCATGTGCAGCACCTACCTTCTGGTGGACGGCTACAACGTGATAA
Agtaagtttttctccgattagataaatatgcttgtctggaggacctctgc
gcatgtatgtatacccccgtcagtgtgtgtctggccttgattatcataac
ttgtcaatgtttcaatggccttttgttgaaagtatgaggtaagtgggtgt
ttcatcttggcgtgtattttttttcacgtaatatatttcctcggatcggt
ctttcactcattcttgtttctctccgattatatcatatacacagCAATTG
GTCCAAGATGATAAAGGCCCGGAGCATAGCAGGAATGCCAAGCGCACGGC
AGGCGCTGTTAGAGCAGCTTCGGTACATCTACCACTCCCGACGCTGGAAA
GTCGTGGTGGCGTACGACGAGCACACGCCGGGCGCGGAGCTGCGGGTGAT
GGAGGGGGACGTGGACGAGGTCTACACCGGCGCGCTTGACTCGGCGGATT
CTTACATCGAGAGACGGGCAGTAGAGCTTTGTAAGAAGTCGGCGGGTCCT
CGAGTCAAGGTTGCCACGGATGATCGAACCATTCAAGTAGTGAGCCTAGC
TTCCGGTGCGGAGATGATGTCCACGAGCAGTCTGATCAAAGAGATTTACC
TGGCCAGGCGCGAGCTGCTGTTTCAGCGGGATAATTCAGACTGGCGGTCA
AAGAAGGCCTTTGACGATGCGCAAGAATACTTCATTGATTAGGCCTAGGC
AAGGGAGGCAGGAGTGCAGGAGTCTGGGGATATACAGTCCAGCTCACAAG
AACGTAGTTGTAGAAAAATATGGCAATGTATCATATCAATCATAGAATAG
AAGCAATGAGACG
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protein sequence of NO04G03230.1

>NO04G03230.1-protein ID=NO04G03230.1-protein|Name=NO04G03230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=351bp
MRWQHYSGDRQRVPLLRLPLTVLLLTLLGLCPLKCFAAAATSRSRIGDYR
GASLAFTPVFTASVNVWCRSIQRSSQLAVCSTCPLLACNSRDGVVRYGTK
GRKKHRTSRCRKSDDGEYCEDSDECEAPRVSSQINIPVRRQIAFVKQMKK
LMKAEERPKEVAKKVRRKKDSAQREAISGDYARFDQTMCSTYLLVDGYNV
INNWSKMIKARSIAGMPSARQALLEQLRYIYHSRRWKVVVAYDEHTPGAE
LRVMEGDVDEVYTGALDSADSYIERRAVELCKKSAGPRVKVATDDRTIQV
VSLASGAEMMSTSSLIKEIYLARRELLFQRDNSDWRSKKAFDDAQEYFID
*
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Synonyms
Publications