NO04G02940, NO04G02940 (gene) Nannochloropsis oceanica

Overview
NameNO04G02940
Unique NameNO04G02940
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1457
Alignment locationchr4:779751..781207 -

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Properties
Property NameValue
DescriptionRna binding protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:779751..781207 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006413translational initiation
GO:0006413translational initiation
Vocabulary: Molecular Function
TermDefinition
GO:0003743translation initiation factor activity
GO:0003743translation initiation factor activity
Vocabulary: INTERPRO
TermDefinition
IPR036877SUI1_dom_sf
IPR005872SUI1_arc_bac
IPR001950TIF_SUI1
Homology
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BLAST of NO04G02940 vs. NCBI_GenBank
Match: XP_005854975.1 (rna binding protein [Nannochloropsis gaditana CCMP526] >EKU21386.1 rna binding protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 204.9 bits (520), Expect = 2.800e-49
Identity = 135/211 (63.98%), Postives = 156/211 (73.93%), Query Frame = 0 
Query:   39 PLVRRSGILYCGVCSIPPEFCEYNPPELYADCLQWQAEHHPELLPEGKTLEDMLAKLSLKNGSRDGVGSAKPSGD--------XXXXXXXXXXXXXXXXXXXXXEGKKKRGGPKGIKKKDTAGSGGKVTIMRMSRNKRKSITVITGLDTYRELKLKDIAKAMGKLFASGASVSDTASGGKEIVIQGDVIEGVAAMLENKYQVPRENIILKS 242
            PL +R+ ILYCGVCSIPPE+C +NPP+LYADCL+WQA+ H ELLPEG +++DMLAKL+L N      G    SGD        XXXXXXXXXXXXXXXXXXXXX                     GKV IMRMSRNKRKSITV+TGLD+Y +LKLKD+AKA+GK FASGASVSDT SGGKEIVIQGDVI+ +A MLE KY+VP  NI++KS
Sbjct:   34 PLEKRTDILYCGVCSIPPEYCIFNPPDLYADCLRWQAKCHTELLPEGASVDDMLAKLNLHNSGSG--GKINSSGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKVLIMRMSRNKRKSITVVTGLDSYPDLKLKDVAKALGKAFASGASVSDTGSGGKEIVIQGDVIDSLAIMLEEKYKVPATNIMIKS 242
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BLAST of NO04G02940 vs. NCBI_GenBank
Match: EWM28669.1 (translation machinery-associated protein 22 [Nannochloropsis gaditana])

HSP 1 Score: 201.4 bits (511), Expect = 3.100e-48
Identity = 132/189 (69.84%), Postives = 151/189 (79.89%), Query Frame = 0 
Query:   51 VCSIPPEFCEYNPPELYADCLQWQAEHHPELLPEGKTLEDMLAKLSLKNGSRDG-------VGSAKPSGDXXXXXXXXXXXXXXXXXXXXXEGKKKRGGPKGIKKKDTAGSGGKVTIMRMSRNKRKSITVITGLDTYRELKLKDIAKAMGKLFASGASVSDTASGGKEIVIQGDVIEGVAAMLENKYQV 233
            VCSIPPE+C +NPP+LYADCL+WQA+ H ELLPEG +++DMLAKL+L N    G                XXXXXXXXXXXXXXXXXXXXX     +GGPKGIKKK+TA SGGKV IMRMSRNKRKSITV+TGLD+Y +LKLKD+AKA+GK FASGASVSDT SGGKEIVIQGDVI+ +A MLE KY+V
Sbjct:   14 VCSIPPEYCIFNPPDLYADCLRWQAKCHTELLPEGASVDDMLAKLNLHNSGSGGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGGPKGIKKKETA-SGGKVLIMRMSRNKRKSITVVTGLDSYPDLKLKDVAKALGKAFASGASVSDTGSGGKEIVIQGDVIDSLAIMLEEKYKV 201
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BLAST of NO04G02940 vs. NCBI_GenBank
Match: EME50057.1 (hypothetical protein DOTSEDRAFT_107825, partial [Dothistroma septosporum NZE10])

HSP 1 Score: 102.8 bits (255), Expect = 1.500e-18
Identity = 72/199 (36.18%), Postives = 104/199 (52.26%), Query Frame = 0 
Query:   46 ILYCGVCSIPPEFCEYNPPELYADCLQWQAEHHPEL---LPEGKTLEDMLAKLSL---KNGSRDGVGSAKPSGDXXXXXXXXXXXXXXXXXXXXXEGKKKRGGPKGIKKKDTAGSGGKVTIMRMSRNKRKSITVITGLDTYRELKLKDIAKAMGKLFASGASVSDTASGGKEIVIQGDVIEGVAAMLENKY-QVPRENI 238
            I YCGVCS+PPE+CEY        C +W   +HP+L   L   + L   L+ LS+   K   +D +  A  +                       E ++K+        +D A S  KV I R+ RNKRK +T ++GL+ +  L LK +AK  GK FA+G+SV+ TASGG+EI IQGDV + V   LE  + ++P +N+
Sbjct:   18 ITYCGVCSLPPEYCEYGGTT--KKCQEWLENNHPDLYSRLYSDEALSSNLSTLSVDAQKRAEKDAIKKAAKA-----------------------EAQEKKAA------EDRASS--KVYIKRVERNKRKYVTEVSGLEAF-GLDLKKVAKEFGKKFATGSSVTKTASGGEEITIQGDVSDDVVEWLEEHHEEIPEDNV 182
[Close]
BLAST of NO04G02940 vs. NCBI_GenBank
Match: KFX90781.1 (hypothetical protein O988_08034 [Pseudogymnoascus sp. VKM F-3808])

HSP 1 Score: 102.4 bits (254), Expect = 2.000e-18
Identity = 71/206 (34.47%), Postives = 104/206 (50.49%), Query Frame = 0 
Query:   39 PLVRRSGILYCGVCSIPPEFCEYNPPELYADCLQWQAEHHPEL---LPEGKTLEDMLAKLSLKNGSRDGVGSAKPSGDXXXXXXXXXXXXXXXXXXXXXEGKKKRGGPKGIKKKDTAGSGGKVTIMRMSRNKRKSITVITGLDTYRELKLKDIAKAMGKLFASGASVSDTASGGKEIVIQGDVIEGVAAMLENKY--QVPRENIIL 240
            P ++   I+YCGVC++PPE+CE+        C +W  EHHP++   +     LE   + LSL    R    SA                            KK        +K  +A +  ++ I R+ RNKRK +T ++GL+ +  L+LK ++K  GK FA+G+SV+ TASGG+EIV+QGDV   +   L  KY   VP +NI L
Sbjct:    8 PELQARHIVYCGVCTLPPEYCEFGGTT--KKCQEWLEEHHPDMSERIYSADALEAATSTLSLDAQKRANKDSA----------------------------KKXXXXXXXEQKHASALAASRIIIKRVERNKRKYVTAVSGLEAF-GLELKKVSKDFGKKFATGSSVTKTASGGEEIVVQGDVSTEIEDFLLEKYGDLVPGDNIEL 182
[Close]
BLAST of NO04G02940 vs. NCBI_GenBank
Match: KFY39933.1 (hypothetical protein V495_05687 [Pseudogymnoascus sp. VKM F-4514 (FW-929)] >KFY59274.1 hypothetical protein V497_04395 [Pseudogymnoascus sp. VKM F-4516 (FW-969)])

HSP 1 Score: 101.3 bits (251), Expect = 4.400e-18
Identity = 70/199 (35.18%), Postives = 101/199 (50.75%), Query Frame = 0 
Query:   46 ILYCGVCSIPPEFCEYNPPELYADCLQWQAEHHPEL---LPEGKTLEDMLAKLSLKNGSRDGVGSAKPSGDXXXXXXXXXXXXXXXXXXXXXEGKKKRGGPKGIKKKDTAGSGGKVTIMRMSRNKRKSITVITGLDTYRELKLKDIAKAMGKLFASGASVSDTASGGKEIVIQGDVIEGVAAMLENKY--QVPRENIIL 240
            I+YCGVC++PPE+CE+        C +W  EHHP++   +     LE   + LSL    R    SA                            KK        +K  +A +  ++ I R+ RNKRK +T ++GL+ +  L+LK ++K  GK FA+G+SV+ TASGG+EIV+QGDV   +   L  KY   VP +NI L
Sbjct:   15 IVYCGVCTLPPEYCEFGGTT--KKCQEWLEEHHPDMSERIYSADALEAATSTLSLDAQKRANKDSA----------------------------KKXXXXXXXEQKHASALAASRIIIKRVERNKRKYVTAVSGLEAF-GLELKKVSKDFGKKFATGSSVTKTASGGEEIVVQGDVSTEIEDFLLEKYGDLVPGDNIEL 182
[Close]
BLAST of NO04G02940 vs. NCBI_GenBank
Match: KKY32279.1 (putative translation machinery-associated protein 22 [Diaporthe ampelina])

HSP 1 Score: 98.6 bits (244), Expect = 2.800e-17
Identity = 67/199 (33.67%), Postives = 100/199 (50.25%), Query Frame = 0 
Query:   46 ILYCGVCSIPPEFCEYNPPELYADCLQWQAEHHPEL---LPEGKTLEDMLAKLSL---KNGSRDGVGSAKPSGDXXXXXXXXXXXXXXXXXXXXXEGKKKRGGPKGIKKKDTAGSGGKVTIMRMSRNKRKSITVITGLDTYRELKLKDIAKAMGKLFASGASVSDTASGGKEIVIQGDVIEGVAAMLENKY-QVPRENI 238
            +LYCGVC++PPE+CEY        C +W  ++H +L   +   + L    A LS+   K   +D +                               KK        +K+    +   VTI R+ RNKRK +T ++GL+ + +L LK +AK  GK FA+G+SV+ T SGG+EIV+QGDV + +   L  KY Q+P +NI
Sbjct:   16 VLYCGVCTLPPEYCEYG--GTVKKCQEWLQKNHNDLYETIWSPEALAASTANLSVEAQKRAEKDAL-------------------------------KKTAKAEAAEQKQADKRAASVVTIKRIERNKRKYVTAVSGLEAF-DLDLKKVAKEFGKKFATGSSVTKTPSGGEEIVVQGDVSDEIEDFLNEKYKQIPEDNI 180
[Close]
BLAST of NO04G02940 vs. NCBI_GenBank
Match: PHH59701.1 (hypothetical protein CDD81_2647 [Ophiocordyceps australis])

HSP 1 Score: 97.8 bits (242), Expect = 4.800e-17
Identity = 68/198 (34.34%), Postives = 102/198 (51.52%), Query Frame = 0 
Query:   46 ILYCGVCSIPPEFCEYNPPELYADCLQWQAEHHP---ELLPEGKTLEDMLAKLSLKNGSRDGVGSAKPSGDXXXXXXXXXXXXXXXXXXXXXEGKKKRGGPKGIKKKDTAGSGGKVTIMRMSRNKRKSITVITGLDTYRELKLKDIAKAMGKLFASGASVSDTASGGKEIVIQGDVIEGVAAMLENKY-QVPRENIIL 240
            ++YCGVC++PPE+CEY        C +W  + HP   E +   + LE   A LS++  +R    + K +                       E  +++   K  K          VTI R+ RNK+K +T + GL+ +  L LK +AK +GK FA+G+SV+  ASGG+EIV+QGDV + V   L  KY ++P +NI L
Sbjct:   18 VVYCGVCTLPPEYCEYG--GTVRKCQEWLEQKHPAMYERIWSTEALEAATASLSVEAQARAAKDAQKKTA--------------------KAEAAEQKHADKLAK--------SVVTIKRIERNKKKFVTAVMGLEAF-GLDLKKVAKDLGKKFATGSSVTKVASGGEEIVVQGDVSDEVEEFLIEKYKEIPEDNIEL 184
[Close]
BLAST of NO04G02940 vs. NCBI_GenBank
Match: KFY10525.1 (hypothetical protein V492_04976 [Pseudogymnoascus sp. VKM F-4246])

HSP 1 Score: 97.4 bits (241), Expect = 6.300e-17
Identity = 70/199 (35.18%), Postives = 99/199 (49.75%), Query Frame = 0 
Query:   46 ILYCGVCSIPPEFCEYNPPELYADCLQWQAEHHP---ELLPEGKTLEDMLAKLSLKNGSRDGVGSAKPSGDXXXXXXXXXXXXXXXXXXXXXEGKKKRGGPKGIKKKDTAGSGGKVTIMRMSRNKRKSITVITGLDTYRELKLKDIAKAMGKLFASGASVSDTASGGKEIVIQGDVIEGVAAMLENKY--QVPRENIIL 240
            I+YCGVC++PPE+CE+        C +W  E HP   E +     LE   + LSL    R    SA                            KK        +K  +A +  ++ I R+ RNKRK +T ++GL+ +  L+LK ++K  GK FA+G+SV+ TASGG+EIV+QGDV   +   L  KY   VP +NI L
Sbjct:   15 IVYCGVCTLPPEYCEFGGTT--KKCQEWLEEKHPKMSERIYSADALEAATSTLSLDAQKRANKDSA----------------------------KKXXXXXXXEQKHASALAASRIIIKRVERNKRKYVTAVSGLEAF-GLELKKVSKDFGKKFATGSSVTKTASGGEEIVVQGDVSTEIEDFLLEKYGDLVPGDNIEL 182
[Close]
BLAST of NO04G02940 vs. NCBI_GenBank
Match: KFY33805.1 (hypothetical protein V494_07307 [Pseudogymnoascus sp. VKM F-4513 (FW-928)])

HSP 1 Score: 97.4 bits (241), Expect = 6.300e-17
Identity = 70/199 (35.18%), Postives = 99/199 (49.75%), Query Frame = 0 
Query:   46 ILYCGVCSIPPEFCEYNPPELYADCLQWQAEHHP---ELLPEGKTLEDMLAKLSLKNGSRDGVGSAKPSGDXXXXXXXXXXXXXXXXXXXXXEGKKKRGGPKGIKKKDTAGSGGKVTIMRMSRNKRKSITVITGLDTYRELKLKDIAKAMGKLFASGASVSDTASGGKEIVIQGDVIEGVAAMLENKY--QVPRENIIL 240
            I+YCGVC++PPE+CE+        C +W  E HP   E +     LE   + LSL    R    SA                            KK        +K  +A +  ++ I R+ RNKRK +T ++GL+ +  L+LK ++K  GK FA+G+SV+ TASGG+EIV+QGDV   +   L  KY   VP +NI L
Sbjct:  149 IVYCGVCTLPPEYCEFGGTT--KKCQEWLEEKHPKMSERIYSADALEAATSTLSLDAQKRANKDSA----------------------------KKXXXXXXXEQKHASALAASRIIIKRVERNKRKYVTAVSGLEAF-GLELKKVSKDFGKKFATGSSVTKTASGGEEIVVQGDVSTEIEDFLLEKYGDLVPGDNIEL 316
[Close]
BLAST of NO04G02940 vs. NCBI_GenBank
Match: KKY19334.1 (putative translation machinery-associated protein 22 [Diplodia seriata])

HSP 1 Score: 97.4 bits (241), Expect = 6.300e-17
Identity = 67/203 (33.00%), Postives = 98/203 (48.28%), Query Frame = 0 
Query:   39 PLVRRSGILYCGVCSIPPEFCEYNPPELYADCLQWQAEHHPEL---LPEGKTLEDMLAKLSLKNGSRDGVGSAKPSGDXXXXXXXXXXXXXXXXXXXXXEGKKKRGGPKGIKKKDTAGSGGKVTIMRMSRNKRKSITVITGLDTYRELKLKDIAKAMGKLFASGASVSDTASGGKEIVIQGDVIEGVAAMLENKY-QVPRENI 238
            PL     ++YCGVC++PPE+CE+        C +W  EHHP++   L     LE  ++ LS++   R                               X                      KVTI R+ RNKRK +T I GL+ +  L+LK +AK +GK FA+GASV+   +GG+EI +QGD+ + VA  L +KY +VP +N+
Sbjct:    8 PLPEAKQVVYCGVCTLPPEYCEFGGTT--KKCEEWLQEHHPDMHARLYSADALEANMSSLSVEAQQR----------------------------AEKXXXXXXXXXXXXXXXXXXXXXXSKVTIKRIERNKRKYVTAIVGLEAF-GLELKKVAKDLGKKFATGASVTKLPAGGEEITLQGDLSDDVAEFLVDKYEEVPEDNV 179
The following BLAST results are available for this feature:
BLAST of NO04G02940 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005854975.12.800e-4963.98rna binding protein [Nannochloropsis gaditana CCMP... [more]
EWM28669.13.100e-4869.84translation machinery-associated protein 22 [Nanno... [more]
EME50057.11.500e-1836.18hypothetical protein DOTSEDRAFT_107825, partial [D... [more]
KFX90781.12.000e-1834.47hypothetical protein O988_08034 [Pseudogymnoascus ... [more]
KFY39933.14.400e-1835.18hypothetical protein V495_05687 [Pseudogymnoascus ... [more]
KKY32279.12.800e-1733.67putative translation machinery-associated protein ... [more]
PHH59701.14.800e-1734.34hypothetical protein CDD81_2647 [Ophiocordyceps au... [more]
KFY10525.16.300e-1735.18hypothetical protein V492_04976 [Pseudogymnoascus ... [more]
KFY33805.16.300e-1735.18hypothetical protein V494_07307 [Pseudogymnoascus ... [more]
KKY19334.16.300e-1733.00putative translation machinery-associated protein ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL081nonsL081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR111ngnoR111Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G02940.1NO04G02940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|637101gene_2065Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100002g16gene1916Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G02940.1NO04G02940.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G02940 ID=NO04G02940|Name=NO04G02940|organism=Nannochloropsis oceanica|type=gene|length=1457bp
ATGGCAGACGTCATTGAGGAGAAGCCGTCCGCCGTGGCCGCCGCGAAAAG
AATGGGAGGCGATGGGCAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAATTGGTACCGCTGGTGCGGCGTTCTGGCATCCTGTATTGTGGC
Ggtgagtacaggggacggcagttgaaaagaagaggggcttgcgggcgccg
acaaccatgccattctcataatctcttccctctccctttttcagTGTGCA
GCATTCCGCCCGAGTTCTGTGAGTACAATCCCCCAGAACTCTACGCCGAC
TGCCTCCAATGGCAAGCCGAGCATCATCCTGAGTTATTGCCTGAGgtaag
caatagtgaatagagacagatctgcatttgttgatggacgaatagatggg
tatccataacttcatgggtatgtgcctcacgtctcccttctatttccttc
cttttttagGGTAAAACGCTGGAGGATATGCTGGCGAAATTGAGCCTTAA
AAATGGCAGCAGGGACGGTGTAGGTTCAGCTAAGCCTAGTGGTGATGCTG
CAGCAGAGGGCGAGGGTTGCGCAGGGGATGTTGGGGAGgtcagtcttttt
gagggggcagtcggatgttcatttcctaagatatatcacacattctcttt
cttgctcatttattttcctgaacagGAAGGGGAAGTCGATGATGAAGgta
aacaacttgcaaattaagagggaatgtctgtgtgtacgaaaaagcgcaaa
tcactttgttctaatcagtcccccgcactcatagAGGGCAAGAAGAAGAG
GGGTGGGCCCAAGGGCATCAAGAAAAAGGATACTGCGGGATCAGGGGGGA
AGGTGACCATCATGCGCATGTCACGTAACAAACGGAAATCCATAACGGTC
ATCACGGGCCTCGACACGTACCGAGgtgagggcgagaagggaggggaacg
gaggcgagatatgtagcttatgagtggaatgtggcaaggcgtctgtagat
ttccatcgcatgcgcatcttgagtcatacttgttcttaaggaacacacaa
cacccgtgtgtgaatgtacataaatacatatgtggacatatataaatata
tgtaaatatatttatatatatattcctctcgtaccaccactctcagAGTT
GAAACTCAAGGACATTGCCAAGGCCATGGGCAAGTTGTTCGCATCGGGGG
CCTCAGTGTCTGACACGGCCAGCGGAGGCAAGGAGATTGTCATCCAGGGC
GACGTGATCGAGGGCGTGGCCGCCATGCTCGAGAACAAGTACCAGgtaag
ggaacggggagaaaagggagggaataggggccattttcgggggcatttgc
aataaaaaagaagcttgcttttaagtcgaatacaaaatcgcatttcctcc
cctcccctcgtttttgttctttagGTGCCGCGGGAAAACATTATTCTCAA
GTCGTAG
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protein sequence of NO04G02940.1

>NO04G02940.1-protein ID=NO04G02940.1-protein|Name=NO04G02940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=242bp
MADVIEEKPSAVAAAKRMGGDGQEEEEEEEEEEEEELVPLVRRSGILYCG
VCSIPPEFCEYNPPELYADCLQWQAEHHPELLPEGKTLEDMLAKLSLKNG
SRDGVGSAKPSGDAAAEGEGCAGDVGEEGEVDDEEGKKKRGGPKGIKKKD
TAGSGGKVTIMRMSRNKRKSITVITGLDTYRELKLKDIAKAMGKLFASGA
SVSDTASGGKEIVIQGDVIEGVAAMLENKYQVPRENIILKS*
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Synonyms
Publications