NO04G02720, NO04G02720 (gene) Nannochloropsis oceanica

Overview
NameNO04G02720
Unique NameNO04G02720
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length867
Alignment locationchr4:719381..720247 -

Link to JBrowse

Properties
Property NameValue
DescriptionRNAse P, Rpr2/Rpp21 subunit
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:719381..720247 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007175Rpr2
Homology
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BLAST of NO04G02720 vs. NCBI_GenBank
Match: XP_005856161.1 (hypothetical protein NGA_2086900 [Nannochloropsis gaditana CCMP526] >EKU20200.1 hypothetical protein NGA_2086900 [Nannochloropsis gaditana CCMP526] >EWM28656.1 RNAse P, Rpr2/Rpp21 subunit [Nannochloropsis gaditana])

HSP 1 Score: 173.3 bits (438), Expect = 1.100e-39
Identity = 122/286 (42.66%), Postives = 159/286 (55.59%), Query Frame = 0 
Query:    8 RLLQGCHVPLSILAPP-PINQRGSLAAFPPMDPALLLRLEFLWQQSLAHLPTNPTYSRVLSRQLVRARDVALAHVALHPRLPDLLCPDCGVILVPGLTARARLHPRRTSCPVNANRXXXXXXXXXXXXXDRTSGGENSRRPVP-MLRNEVAYACLLC-QGIRKRDGVPRRTGAATTSIGKESCVNVKVQGSIITTALPSPPSEQRTERQSILAPAEEEDFIPLHPESGK---KRPYQPQAQRLLLDAKPRKRKGKEEMKKLXXXXXLKSESRSIGQLRGFLSSLKK 288
            RLL+   VP S LAP   I+ +    A   ++PALLLRL++LW+Q+L+HLPTN TYSR LSR+ +R RD+  AH  LHP L D LCP CGVIL PG+TAR R+         NA R             D  SG   +   VP  L+N V YAC+LC +G R  DG  RR+    +++G+      K + S++        S   + +Q +    EEEDFIPL  ES +   K        RLLLD KPRKRK +EE  +       KS SRS+GQ+RGFL+S +K
Sbjct:   14 RLLESFRVPSSALAPRLSISAQRGKPASDNVEPALLLRLDYLWKQALSHLPTNQTYSRALSRKFIRLRDLFSAHEVLHPHLSDCLCPVCGVILFPGVTARTRVQHGAKRSQANARR---KWMRLSNQNSDPRSGYAAN---VPCSLKNRVTYACMLCNRGSRTMDGATRRSEDKRSTLGEAR----KAETSLLCPGASGELSS--SSKQQVPDTTEEEDFIPLQSESFRQLQKHQKTLAPPRLLLDPKPRKRKRQEEPSR----DGQKSVSRSLGQVRGFLASFQK 283
The following BLAST results are available for this feature:
BLAST of NO04G02720 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005856161.11.100e-3942.66hypothetical protein NGA_2086900 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL081nonsL081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR111ngnoR111Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009546NSK009546Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G02720.1NO04G02720.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G02720.1NO04G02720.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G02720 ID=NO04G02720|Name=NO04G02720|organism=Nannochloropsis oceanica|type=gene|length=867bp
ATGGCCACAACGTCCCTCCATCGTCTTCTGCAAGGATGCCATGTGCCCCT
CTCCATCCTCGCCCCTCCCCCAATCAACCAAAGAGGCTCCCTTGCCGCAT
TCCCCCCCATGGATCCGGCCTTGCTTTTGCGCCTTGAGTTCTTATGGCAA
CAATCTTTGGCTCACCTCCCCACCAATCCCACCTACTCTCGAGTTCTCTC
CCGGCAACTTGTTCGCGCTCGCGACGTTGCCCTCGCTCATGTCGCACTTC
ACCCGCGTTTGCCCGACTTGCTCTGTCCAGATTGCGGCGTCATACTCGTC
CCCGGGCTCACGGCCCGCGCCCGTCTTCACCCTCGACGCACATCCTGCCC
CGTCAACGCAAACCGTCGCCGTCGTAACGACGAGAAGCATCATCGTCATC
AGCATGACCGCACTAGCGGTGGTGAGAATAGCAGGAGGCCAGTCCCGATG
CTCAGAAATGAGGTAGCTTACGCCTGCTTGCTTTGCCAGGGGATTCGCAA
ACGGGATGGCGTGCCACGGAGGACAGGAGCTGCTACTACTTCTATTGGCA
AGGAATCTTGCGTCAATGTTAAAGTCCAAGGCTCCATAATAACTACGGCA
CTACCATCACCACCATCAGAACAGCGAACAGAGCGACAATCTATACTCGC
GCCGGCAGAGGAAGAGGACTTCATCCCTCTACACCCTGAATCAGGGAAAA
AACGACCGTACCAGCCACAAGCCCAACGCTTGCTTTTGGATGCCAAGCCC
CGCAAACGGAAGGGAAAAGAGGAAATGAAAAAGCTGCAGCAGCAACAACA
ATTAAAGTCAGAATCCCGTTCAATAGGGCAGCTCCGGGGTTTCCTTTCGT
CTCTGAAGAAGCCATGA
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protein sequence of NO04G02720.1

>NO04G02720.1-protein ID=NO04G02720.1-protein|Name=NO04G02720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=289bp
MATTSLHRLLQGCHVPLSILAPPPINQRGSLAAFPPMDPALLLRLEFLWQ
QSLAHLPTNPTYSRVLSRQLVRARDVALAHVALHPRLPDLLCPDCGVILV
PGLTARARLHPRRTSCPVNANRRRRNDEKHHRHQHDRTSGGENSRRPVPM
LRNEVAYACLLCQGIRKRDGVPRRTGAATTSIGKESCVNVKVQGSIITTA
LPSPPSEQRTERQSILAPAEEEDFIPLHPESGKKRPYQPQAQRLLLDAKP
RKRKGKEEMKKLQQQQQLKSESRSIGQLRGFLSSLKKP*
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Synonyms
Publications