NO04G02690.1, NO04G02690.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G02690.1
Unique NameNO04G02690.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1763
Alignment locationchr4:714616..716705 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:714616..716705 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO04G02690.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G02690NO04G02690Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G02690.1NO04G02690.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G02690.1.cds1NO04G02690.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G02690.1.cds2NO04G02690.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G02690.1 ID=NO04G02690.1|Name=NO04G02690.1|organism=Nannochloropsis oceanica|type=mRNA|length=1763bp
GGGAGTTGAACATCGCAAGAGGAGGTTTTTGATGCCCCCTTCTGTTCCAC
TTCATGCAGATGGATATTTCGCCCTTAGATTGCATGTGAGCACTTCGAAC
GCCTTGAACCGCTCGCAAGGGAACATGGACTGAGGAATGGGAGATGCTTT
GTATCAGTGACAGAGCTGGGAGCAGTTGTACTCTGAAGTCGGAGGGCAGG
GCAGCTGTACCTCCTCGGCCCGGGACGCAATCTTCGTCCTTTTCAGAGCT
TTACTTGTCGAGAGAGAGCAAGCATTTATCTAATATGCGGCATCACGGTC
ACCCTCGCGCTTCGTTTACTCCGAATCATCCTCCTGACCCCCTTCCTTCT
CTCCAACACTTTGTCTCCTCCCCCCCCCTCGTTCACTTTAGCTACTTCAA
GCACATTTACCCTCATACCCTCAGCCTCGTTAGCCATGTCTGACTCCAAG
CTCTCCCGCAAGCTGAGCCGCACCTCCGATGAGCCTTATCTTTACGAGTC
CTACTCCAAGGATAGTGAGGAAGGAAAATACACTAAGACAGACTGCCTGC
GCTTGGCGAAGACCCTGACGGATCTGGCCCAGGTCCCCGCCCCATGCAAG
GAAGTCGTCCAAAACGAGCAAGCCATGCGTAAGGCCTTCGAGGGTGCCAC
TGTCACCGACCGAGCTCGCCACGCAATTGCCACGCGTAAGGGCACGGTGT
CTCACCACCAGCTACAACGGCGCTTGACATCCACTTCTGAGACTATGGCC
CGTTAATTTGGCCTCGTTCTGACACTGTGCGTGTGGGAGTGCTTGTATGT
TTGGTGTCTCGGTTGGTAAGGCGAGAAAGAGAAAAAGAGAGAGACATCAA
GAAGAAAATGTAAAACGCAGAGACCAGCAGAGTACGTGTGGCTGGTGTCT
TCTTCTTTTTATAAATAACGGCAGCAATGGCGGAAAGCGGAAAGTTACTG
GAGGAAGGAATAAGAGCTACTTAAAAATGCACCAGCACGCACCATGATCA
TGATCATCGTCGATAAGCATAGGAGAGTGACGAAGGGCTGTCATGCCTTC
CTTCCCCTCCCCCCCCCCCCCCCCCACAAAACGAAAAAATCATTTTTTTA
GAACAATGCAATCAAACAAGCGAGTAAATGGAAGGCAAGAAACAAGAGAT
GACAAAAAGAGAGGAACAAGATATACAATATTCAAGAATAGGGGTCAGAG
ATGAAAAAAGCGAAAACAGTTCTCAATCCAAAAAAAGTGCTTTTGAAAGC
AGGTGAGCGTGTATGAGCGTGGCTTCTTTTGGTGCATGGACAAGCGTAGA
GGATCGGAAGGTTCTCGGCCGCCCCCCTTCCCCCTTTTACCACCTCGCCA
CATTTTTTCCAGCAGAAATTGGCCCTTCATACTGTCTCTTAGATTCCTGC
TTGTACATGCTGTTACCTAGATAGAAAGCTACAGGCAGAGGATGGTTTGA
AGACGAAGAAGGGAGAGACTTCCTAAAGCCATTTACCTTAAGAGAAGGGA
AAGAGAACAAAGGAGCAAACCACAAGAATGCGGCGAAGATAAAAACCAAG
AATCAGCAATCTGAGGGAGGAAGAAAGAGAGGCATGTTTTGTTTGTTTGA
GGGTGTGTGTGGTGTTCAGGTGCATGCGTGCATGAATATTTGTGTGTGCG
TGTATTCAAGGTGGACGTAAAGAACCGCACGTCGTCTTTGTCGTAGTGGA
TCGACAACTTTCAAACGGAGAAGGATATGAGTGAGGGAAAAGAAATGATA
AGAAGACGAATTC
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protein sequence of NO04G02690.1

>NO04G02690.1-protein ID=NO04G02690.1-protein|Name=NO04G02690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=107bp
MSDSKLSRKLSRTSDEPYLYESYSKDSEEGKYTKTDCLRLAKTLTDLAQV
PAPCKEVVQNEQAMRKAFEGATVTDRARHAIATRKGTVSHHQLQRRLTST
SETMAR*
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mRNA from alignment at chr4:714616..716705-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G02690.1 ID=NO04G02690.1|Name=NO04G02690.1|organism=Nannochloropsis oceanica|type=mRNA|length=2090bp|location=Sequence derived from alignment at chr4:714616..716705- (Nannochloropsis oceanica)
GGGAGTTGAACATCGCAAGAGGAGGTTTTTGATGCCCCCTTCTGTTCCAC
TTCATGCAGATGGATATTTCGCCCTTAGATTGCATGTGAGCACTTCGAAC
GCCTTGAACCGCTCGCAAGGGAACATGGACTGAGGAATGGGAGATGCTTT
GTATCAGTGACAGAGCTGGGAGCAGTTGTACTCTGAAGTCGGAGGGCAGG
GCAGCTGTACCTCCTCGGCCCGGGACGCAATCTTCGTCCTTTTCAGAGCT
TTACTTGTCGAGAGAGAGCAAGCATTTATCTAATATGCGGCATCACGGTC
ACCCTCGCGCTTCGTTTACTCCGAATCATCCTCCTGACCCCCTTCCTTCT
CTCCAACACTTTGTCTCCTCCCCCCCCCTCGTTCACTTTAGCTACTTCAA
GCACATTTACCCTCATACCCTCAGCCTCGTTAGCCATGTCTGACTCCAAG
CTCTCCCGCAAGCTGAGCCGCACCTCCGATGAGCCTTATCTTTACGAGTC
CTACTCCAAGGATAGTGGTATGTGGAGTGGTGGGATGGGTGGGTGGGGTA
GGGCAAAAAGGATGCGAGCCTGATGGCGGCAGTTATTCGTTCTTTTTGAT
ATCCAAGGCACTTTGTATATCGCGTGCTTGTGAGCTTGCATGCATCGAAG
GCATGTATGGCAAACATTCATGTATTTCTGTGCCTTATGGGAGCAAGAAG
CGATTTGCCATGCGCATGCACCCGTCAAAATGACCCCCTCTTTCCACGGT
CCCCGAATACTTTTTTCGGAAATGTTTTTAAGGGCCACCGGCACTCCCTC
TCCCTCACTTACACCCACACATCCCACCGACCACCAAAATATAGAGGAAG
GAAAATACACTAAGACAGACTGCCTGCGCTTGGCGAAGACCCTGACGGAT
CTGGCCCAGGTCCCCGCCCCATGCAAGGAAGTCGTCCAAAACGAGCAAGC
CATGCGTAAGGCCTTCGAGGGTGCCACTGTCACCGACCGAGCTCGCCACG
CAATTGCCACGCGTAAGGGCACGGTGTCTCACCACCAGCTACAACGGCGC
TTGACATCCACTTCTGAGACTATGGCCCGTTAATTTGGCCTCGTTCTGAC
ACTGTGCGTGTGGGAGTGCTTGTATGTTTGGTGTCTCGGTTGGTAAGGCG
AGAAAGAGAAAAAGAGAGAGACATCAAGAAGAAAATGTAAAACGCAGAGA
CCAGCAGAGTACGTGTGGCTGGTGTCTTCTTCTTTTTATAAATAACGGCA
GCAATGGCGGAAAGCGGAAAGTTACTGGAGGAAGGAATAAGAGCTACTTA
AAAATGCACCAGCACGCACCATGATCATGATCATCGTCGATAAGCATAGG
AGAGTGACGAAGGGCTGTCATGCCTTCCTTCCCCTCCCCCCCCCCCCCCC
CCACAAAACGAAAAAATCATTTTTTTAGAACAATGCAATCAAACAAGCGA
GTAAATGGAAGGCAAGAAACAAGAGATGACAAAAAGAGAGGAACAAGATA
TACAATATTCAAGAATAGGGGTCAGAGATGAAAAAAGCGAAAACAGTTCT
CAATCCAAAAAAAGTGCTTTTGAAAGCAGGTGAGCGTGTATGAGCGTGGC
TTCTTTTGGTGCATGGACAAGCGTAGAGGATCGGAAGGTTCTCGGCCGCC
CCCCTTCCCCCTTTTACCACCTCGCCACATTTTTTCCAGCAGAAATTGGC
CCTTCATACTGTCTCTTAGATTCCTGCTTGTACATGCTGTTACCTAGATA
GAAAGCTACAGGCAGAGGATGGTTTGAAGACGAAGAAGGGAGAGACTTCC
TAAAGCCATTTACCTTAAGAGAAGGGAAAGAGAACAAAGGAGCAAACCAC
AAGAATGCGGCGAAGATAAAAACCAAGAATCAGCAATCTGAGGGAGGAAG
AAAGAGAGGCATGTTTTGTTTGTTTGAGGGTGTGTGTGGTGTTCAGGTGC
ATGCGTGCATGAATATTTGTGTGTGCGTGTATTCAAGGTGGACGTAAAGA
ACCGCACGTCGTCTTTGTCGTAGTGGATCGACAACTTTCAAACGGAGAAG
GATATGAGTGAGGGAAAAGAAATGATAAGAAGACGAATTC
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Coding sequence (CDS) from alignment at chr4:714616..716705-

>NO04G02690.1 ID=NO04G02690.1|Name=NO04G02690.1|organism=Nannochloropsis oceanica|type=CDS|length=321bp|location=Sequence derived from alignment at chr4:714616..716705- (Nannochloropsis oceanica)
ATGTCTGACTCCAAGCTCTCCCGCAAGCTGAGCCGCACCTCCGATGAGCC
TTATCTTTACGAGTCCTACTCCAAGGATAGTGAGGAAGGAAAATACACTA
AGACAGACTGCCTGCGCTTGGCGAAGACCCTGACGGATCTGGCCCAGGTC
CCCGCCCCATGCAAGGAAGTCGTCCAAAACGAGCAAGCCATGCGTAAGGC
CTTCGAGGGTGCCACTGTCACCGACCGAGCTCGCCACGCAATTGCCACGC
GTAAGGGCACGGTGTCTCACCACCAGCTACAACGGCGCTTGACATCCACT
TCTGAGACTATGGCCCGTTAA
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Synonyms
Publications