NO04G02620.1, NO04G02620.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G02620.1
Unique NameNO04G02620.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1506
Alignment locationchr4:698613..700330 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:698613..700330 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G02620.1 vs.
Match: EWM28649.1 (hypothetical protein Naga_100177g15 [Nannochloropsis gaditana])

HSP 1 Score: 245.4 bits (625), Expect = 3.300e-61
Identity = 166/423 (39.24%), Postives = 234/423 (55.32%), Query Frame = 0 
Query:   13 PDKKRTKLDTMD--NDSDDDDFFDRMVGAATSADA-EETLVMGSEEQSPPHHENDGREQDEDAEWCRAMQEHAMATSVVKDEADPIWFEHILRGVLGHSGGTDIAAYALDTDVKIIILTRFLGARRGGGEASLLSKSLLWDAVEQATLTTASSKLNSSSYSSSSNSSSSGSSSTFFLDNLFTPQVALAVRQDSSAGLPPSTFQVLFHALNTSAVLAVLACLGFGVPASPISAWHLQHVDPLHESGLLSHIAESPILTLTHRESEYLYALPPSLPSSSFCLASPLPPFPPAP--FLIRAFPPQLYEHKGTLKDGYELTCNDISLCAVYRREEEGGAWRLQTTATFRGRGYEGELLKYV---LNDRRAKGGREKEEVMKVWVRYDDDGEEGKEVGAVGGLVGE---KGILEGMGSRCLGVGVDLW 425
            PDKKR K    +  +D DDDD+      AA SA A  ET      E    H EN  RE+++   WC AM E+AM  S +++EADP+W++H+LR VLGH   TD+AAY +DTDVK ++ ++FLGAR G    SLLS+ L+  A EQ                S ++      S   +L++LF P+ A+A+ +   AG  PS  +VL H+L+T A+L+ LACLGFGV ++P + W LQ VDPLHE+ LL H+   P L+L  R+SE LYA P   P     LA+P  P PP P  F  +AF          ++ G+ L+C D SLCAVYR     G+WRL+T+     +GYEG LL+++   +        +E+ + + VWV  D   E        GG +GE   + +L  +G    G+GV ++
Sbjct:   21 PDKKRIKTKEAEAGDDDDDDDYH-----AANSAGAGHETRGTLEVENVTSHVENHRREEEK---WCNAMVEYAMTMSAIREEADPVWYQHVLRSVLGHGPETDVAAYLIDTDVKRLVFSQFLGARGG---TSLLSQELMRKAFEQCVA------------KSEASPGDPDDSPALYLNSLFDPRAAIALHRRPGAGQFPSASEVLVHSLDTDALLSALACLGFGVVSAPSTEWRLQRVDPLHEASLLGHVRACPHLSLRLRQSESLYAFPLGAP----LLAAPPEPTPPFPASFSFQAFSTHT-SGAEDMEAGFHLSCGDTSLCAVYRDRLWPGSWRLRTSPPVERKGYEGVLLRFLCQKIVQEEEHEAQERGKDLLVWVSDDASSE--------GGAIGEADIQNVLCNLGFVRKGMGVTIY 407
The following BLAST results are available for this feature:
BLAST of NO04G02620.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
200400600800100012001400Expect = 3.30e-61 / Id = 39.24SequenceEWM28649.1
Match NameE-valueIdentityDescription
EWM28649.13.300e-6139.24hypothetical protein Naga_100177g15 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G02620NO04G02620Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G02620.1NO04G02620.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G02620.1.cds1NO04G02620.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G02620.1.cds2NO04G02620.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G02620.1 ID=NO04G02620.1|Name=NO04G02620.1|organism=Nannochloropsis oceanica|type=mRNA|length=1506bp
CTCAGATGACGGCAGCGATATACTCTTCTTACTCTTGAACCCGTACAAAA
AGCCGCACATAGGCCCGTAAACAAGCTATGGAGGTCGACAACGTCGATAC
AATCATAGCCAGCCCGGACAAGAAGCGAACCAAGCTTGACACGATGGACA
ACGATAGCGACGACGATGATTTCTTCGACCGCATGGTGGGTGCCGCGACG
TCTGCCGACGCCGAAGAAACCTTGGTTATGGGCTCAGAAGAGCAAAGCCC
ACCCCACCACGAAAATGACGGGCGAGAGCAAGATGAGGATGCGGAATGGT
GCCGTGCAATGCAGGAGCATGCCATGGCGACTTCCGTTGTGAAAGACGAG
GCGGACCCCATTTGGTTTGAGCATATTTTACGCGGCGTGTTAGGTCACAG
CGGCGGAACAGATATTGCAGCATACGCACTCGACACAGACGTAAAAATAA
TAATCCTCACCCGCTTCCTGGGCGCCCGACGGGGGGGAGGAGAAGCGTCT
TTGCTTAGCAAGTCGTTACTCTGGGACGCGGTGGAACAAGCCACGCTTAC
CACCGCCAGTAGCAAACTCAACAGCAGCAGCTACAGCAGTAGCAGCAATA
GCAGCAGCAGTGGTTCCTCTTCCACCTTCTTCCTCGACAACCTCTTCACC
CCACAAGTGGCCTTAGCTGTTCGTCAGGATTCTTCTGCCGGCCTCCCACC
CTCCACCTTCCAAGTCCTCTTCCATGCCCTTAACACAAGCGCCGTCCTGG
CCGTGCTTGCTTGTCTAGGATTCGGTGTTCCTGCTTCGCCTATCTCCGCC
TGGCATCTGCAGCACGTGGACCCGCTACACGAATCCGGCCTCTTGTCACA
CATCGCGGAGAGCCCAATTCTGACACTGACGCACCGGGAGAGCGAGTACC
TGTATGCCCTCCCTCCCTCCCTTCCTTCCTCCTCTTTCTGCCTAGCATCA
CCACTACCACCCTTCCCGCCAGCGCCGTTCCTCATTCGAGCCTTCCCCCC
GCAATTGTATGAACACAAAGGTACTTTGAAGGATGGGTATGAATTGACGT
GTAACGATATTTCATTGTGTGCAGTGTATAGAAGAGAGGAGGAAGGAGGG
GCCTGGAGGCTGCAAACAACAGCAACATTCAGAGGGAGGGGGTATGAAGG
GGAGTTACTGAAGTACGTTTTGAATGATAGGCGGGCGAAGGGAGGGAGAG
AAAAAGAGGAGGTCATGAAGGTGTGGGTAAGGTATGACGACGATGGGGAA
GAGGGGAAGGAGGTCGGGGCCGTTGGAGGGCTGGTAGGCGAGAAGGGGAT
CTTGGAGGGCATGGGATCAAGGTGTTTGGGAGTGGGGGTGGATTTATGGG
TGGCGCACCAGTCGCAATAGTAGCAACAACAGTAACAGCGGCAGCGAGAG
CAGAAGCAGGAGCAGGGGCAGGAGCAGGAGCAGTAGAAGAAGTACTGATG
AGATAATTTTGATTTACAAAGTGAAAGGAAAGGGCATAAGGGGATAAATA
AATGTG
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protein sequence of NO04G02620.1

>NO04G02620.1-protein ID=NO04G02620.1-protein|Name=NO04G02620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=431bp
MEVDNVDTIIASPDKKRTKLDTMDNDSDDDDFFDRMVGAATSADAEETLV
MGSEEQSPPHHENDGREQDEDAEWCRAMQEHAMATSVVKDEADPIWFEHI
LRGVLGHSGGTDIAAYALDTDVKIIILTRFLGARRGGGEASLLSKSLLWD
AVEQATLTTASSKLNSSSYSSSSNSSSSGSSSTFFLDNLFTPQVALAVRQ
DSSAGLPPSTFQVLFHALNTSAVLAVLACLGFGVPASPISAWHLQHVDPL
HESGLLSHIAESPILTLTHRESEYLYALPPSLPSSSFCLASPLPPFPPAP
FLIRAFPPQLYEHKGTLKDGYELTCNDISLCAVYRREEEGGAWRLQTTAT
FRGRGYEGELLKYVLNDRRAKGGREKEEVMKVWVRYDDDGEEGKEVGAVG
GLVGEKGILEGMGSRCLGVGVDLWVAHQSQ*
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mRNA from alignment at chr4:698613..700330-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G02620.1 ID=NO04G02620.1|Name=NO04G02620.1|organism=Nannochloropsis oceanica|type=mRNA|length=1718bp|location=Sequence derived from alignment at chr4:698613..700330- (Nannochloropsis oceanica)
CTCAGATGACGGCAGCGATATACTCTTCTTACTCTTGAACCCGTACAAAA
AGCCGCACATAGGCCCGTAAACAAGCTATGGAGGTCGACAACGTCGATAC
AATCATAGCCAGCCCGGACAAGAAGCGAACCAAGCTTGACACGATGGACA
ACGATAGCGACGACGATGATGTAAGTCCCGCCCTCTAATTCACCGCGCAT
GACCACCCTGCATGCATACCTCAATTCGTTGCTGAAAGGGTTCGTCCTGC
AGGCGTATTCCCAGCCACGGCCAGCGCTGGGCTGTGATTCTGGCGCGTTG
CAGTCCTGCGTGTTGCTGCTGCTAGATTTAGTCTCGTAATTTCACTCCGT
CCTTTCATCCCCTGCTTTCATTTATTATACAGTTCTTCGACCGCATGGTG
GGTGCCGCGACGTCTGCCGACGCCGAAGAAACCTTGGTTATGGGCTCAGA
AGAGCAAAGCCCACCCCACCACGAAAATGACGGGCGAGAGCAAGATGAGG
ATGCGGAATGGTGCCGTGCAATGCAGGAGCATGCCATGGCGACTTCCGTT
GTGAAAGACGAGGCGGACCCCATTTGGTTTGAGCATATTTTACGCGGCGT
GTTAGGTCACAGCGGCGGAACAGATATTGCAGCATACGCACTCGACACAG
ACGTAAAAATAATAATCCTCACCCGCTTCCTGGGCGCCCGACGGGGGGGA
GGAGAAGCGTCTTTGCTTAGCAAGTCGTTACTCTGGGACGCGGTGGAACA
AGCCACGCTTACCACCGCCAGTAGCAAACTCAACAGCAGCAGCTACAGCA
GTAGCAGCAATAGCAGCAGCAGTGGTTCCTCTTCCACCTTCTTCCTCGAC
AACCTCTTCACCCCACAAGTGGCCTTAGCTGTTCGTCAGGATTCTTCTGC
CGGCCTCCCACCCTCCACCTTCCAAGTCCTCTTCCATGCCCTTAACACAA
GCGCCGTCCTGGCCGTGCTTGCTTGTCTAGGATTCGGTGTTCCTGCTTCG
CCTATCTCCGCCTGGCATCTGCAGCACGTGGACCCGCTACACGAATCCGG
CCTCTTGTCACACATCGCGGAGAGCCCAATTCTGACACTGACGCACCGGG
AGAGCGAGTACCTGTATGCCCTCCCTCCCTCCCTTCCTTCCTCCTCTTTC
TGCCTAGCATCACCACTACCACCCTTCCCGCCAGCGCCGTTCCTCATTCG
AGCCTTCCCCCCGCAATTGTATGAACACAAAGGTACTTTGAAGGATGGGT
ATGAATTGACGTGTAACGATATTTCATTGTGTGCAGTGTATAGAAGAGAG
GAGGAAGGAGGGGCCTGGAGGCTGCAAACAACAGCAACATTCAGAGGGAG
GGGGTATGAAGGGGAGTTACTGAAGTACGTTTTGAATGATAGGCGGGCGA
AGGGAGGGAGAGAAAAAGAGGAGGTCATGAAGGTGTGGGTAAGGTATGAC
GACGATGGGGAAGAGGGGAAGGAGGTCGGGGCCGTTGGAGGGCTGGTAGG
CGAGAAGGGGATCTTGGAGGGCATGGGATCAAGGTGTTTGGGAGTGGGGG
TGGATTTATGGGTGGCGCACCAGTCGCAATAGTAGCAACAACAGTAACAG
CGGCAGCGAGAGCAGAAGCAGGAGCAGGGGCAGGAGCAGGAGCAGTAGAA
GAAGTACTGATGAGATAATTTTGATTTACAAAGTGAAAGGAAAGGGCATA
AGGGGATAAATAAATGTG
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Coding sequence (CDS) from alignment at chr4:698613..700330-

>NO04G02620.1 ID=NO04G02620.1|Name=NO04G02620.1|organism=Nannochloropsis oceanica|type=CDS|length=1293bp|location=Sequence derived from alignment at chr4:698613..700330- (Nannochloropsis oceanica)
ATGGAGGTCGACAACGTCGATACAATCATAGCCAGCCCGGACAAGAAGCG
AACCAAGCTTGACACGATGGACAACGATAGCGACGACGATGATTTCTTCG
ACCGCATGGTGGGTGCCGCGACGTCTGCCGACGCCGAAGAAACCTTGGTT
ATGGGCTCAGAAGAGCAAAGCCCACCCCACCACGAAAATGACGGGCGAGA
GCAAGATGAGGATGCGGAATGGTGCCGTGCAATGCAGGAGCATGCCATGG
CGACTTCCGTTGTGAAAGACGAGGCGGACCCCATTTGGTTTGAGCATATT
TTACGCGGCGTGTTAGGTCACAGCGGCGGAACAGATATTGCAGCATACGC
ACTCGACACAGACGTAAAAATAATAATCCTCACCCGCTTCCTGGGCGCCC
GACGGGGGGGAGGAGAAGCGTCTTTGCTTAGCAAGTCGTTACTCTGGGAC
GCGGTGGAACAAGCCACGCTTACCACCGCCAGTAGCAAACTCAACAGCAG
CAGCTACAGCAGTAGCAGCAATAGCAGCAGCAGTGGTTCCTCTTCCACCT
TCTTCCTCGACAACCTCTTCACCCCACAAGTGGCCTTAGCTGTTCGTCAG
GATTCTTCTGCCGGCCTCCCACCCTCCACCTTCCAAGTCCTCTTCCATGC
CCTTAACACAAGCGCCGTCCTGGCCGTGCTTGCTTGTCTAGGATTCGGTG
TTCCTGCTTCGCCTATCTCCGCCTGGCATCTGCAGCACGTGGACCCGCTA
CACGAATCCGGCCTCTTGTCACACATCGCGGAGAGCCCAATTCTGACACT
GACGCACCGGGAGAGCGAGTACCTGTATGCCCTCCCTCCCTCCCTTCCTT
CCTCCTCTTTCTGCCTAGCATCACCACTACCACCCTTCCCGCCAGCGCCG
TTCCTCATTCGAGCCTTCCCCCCGCAATTGTATGAACACAAAGGTACTTT
GAAGGATGGGTATGAATTGACGTGTAACGATATTTCATTGTGTGCAGTGT
ATAGAAGAGAGGAGGAAGGAGGGGCCTGGAGGCTGCAAACAACAGCAACA
TTCAGAGGGAGGGGGTATGAAGGGGAGTTACTGAAGTACGTTTTGAATGA
TAGGCGGGCGAAGGGAGGGAGAGAAAAAGAGGAGGTCATGAAGGTGTGGG
TAAGGTATGACGACGATGGGGAAGAGGGGAAGGAGGTCGGGGCCGTTGGA
GGGCTGGTAGGCGAGAAGGGGATCTTGGAGGGCATGGGATCAAGGTGTTT
GGGAGTGGGGGTGGATTTATGGGTGGCGCACCAGTCGCAATAG
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Synonyms
Publications