NO04G02620, NO04G02620 (gene) Nannochloropsis oceanica

Overview
NameNO04G02620
Unique NameNO04G02620
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1718
Alignment locationchr4:698613..700330 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:698613..700330 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO04G02620 vs. NCBI_GenBank
Match: EWM28649.1 (hypothetical protein Naga_100177g15 [Nannochloropsis gaditana])

HSP 1 Score: 233.0 bits (593), Expect = 1.700e-57
Identity = 141/363 (38.84%), Postives = 202/363 (55.65%), Query Frame = 0 
Query:   70 EDAEWCRAMQEHAMATSVVKDEADPIWFEHILRGVLGHSGGTDIAAYALDTDVKIIILTRFLGARRGGGEASLLSKSLLWDAVEQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDNLFTPQVALAVRQDSSAGLPPSTFQVLFHALNTSAVLAVLACLGFGVPASPISAWHLQHVDPLHESGLLSHIAESPILTLTHRESEYLYALPPSLPSSSFCLASPLPPFPPAP--FLIRAFPPQLYEHKGTLKDGYELTCNDISLCAVYRREEEGGAWRLQTTATFRGRGYEGELLKYV---LNDRRAKGGREKEEVMKVWVRYDDDGEEGKEVGAVGGLVGE---KGILEGMGSRCLGVGVDLW 425
            E+ +WC AM E+AM  S +++EADP+W++H+LR VLGH   TD+AAY +DTDVK ++ ++FLGAR   G  SLLS+ L+  A EQ                               L++LF P+ A+A+ +   AG  PS  +VL H+L+T A+L+ LACLGFGV ++P + W LQ VDPLHE+ LL H+   P L+L  R+SE LYA P   P     LA+P  P PP P  F  +AF          ++ G+ L+C D SLCAVYR     G+WRL+T+     +GYEG LL+++   +        +E+ + + VWV  D   E        GG +GE   + +L  +G    G+GV ++
Sbjct:   73 EEEKWCNAMVEYAMTMSAIREEADPVWYQHVLRSVLGHGPETDVAAYLIDTDVKRLVFSQFLGAR---GGTSLLSQELMRKAFEQC------------VAKSEASPGDPDDSPALYLNSLFDPRAAIALHRRPGAGQFPSASEVLVHSLDTDALLSALACLGFGVVSAPSTEWRLQRVDPLHEASLLGHVRACPHLSLRLRQSESLYAFPLGAP----LLAAPPEPTPPFPASFSFQAFSTHT-SGAEDMEAGFHLSCGDTSLCAVYRDRLWPGSWRLRTSPPVERKGYEGVLLRFLCQKIVQEEEHEAQERGKDLLVWVSDDASSE--------GGAIGEADIQNVLCNLGFVRKGMGVTIY 407
The following BLAST results are available for this feature:
BLAST of NO04G02620 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28649.11.700e-5738.84hypothetical protein Naga_100177g15 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL081nonsL081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR111ngnoR111Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009556NSK009556Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G02620.1NO04G02620.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|291790gene_2032Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100177g15gene1945Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G02620.1NO04G02620.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G02620 ID=NO04G02620|Name=NO04G02620|organism=Nannochloropsis oceanica|type=gene|length=1718bp
CTCAGATGACGGCAGCGATATACTCTTCTTACTCTTGAACCCGTACAAAA
AGCCGCACATAGGCCCGTAAACAAGCTATGGAGGTCGACAACGTCGATAC
AATCATAGCCAGCCCGGACAAGAAGCGAACCAAGCTTGACACGATGGACA
ACGATAGCGACGACGATGATgtaagtcccgccctctaattcaccgcgcat
gaccaccctgcatgcatacctcaattcgttgctgaaagggttcgtcctgc
aggcgtattcccagccacggccagcgctgggctgtgattctggcgcgttg
cagtcctgcgtgttgctgctgctagatttagtctcgtaatttcactccgt
cctttcatcccctgctttcatttattatacagTTCTTCGACCGCATGGTG
GGTGCCGCGACGTCTGCCGACGCCGAAGAAACCTTGGTTATGGGCTCAGA
AGAGCAAAGCCCACCCCACCACGAAAATGACGGGCGAGAGCAAGATGAGG
ATGCGGAATGGTGCCGTGCAATGCAGGAGCATGCCATGGCGACTTCCGTT
GTGAAAGACGAGGCGGACCCCATTTGGTTTGAGCATATTTTACGCGGCGT
GTTAGGTCACAGCGGCGGAACAGATATTGCAGCATACGCACTCGACACAG
ACGTAAAAATAATAATCCTCACCCGCTTCCTGGGCGCCCGACGGGGGGGA
GGAGAAGCGTCTTTGCTTAGCAAGTCGTTACTCTGGGACGCGGTGGAACA
AGCCACGCTTACCACCGCCAGTAGCAAACTCAACAGCAGCAGCTACAGCA
GTAGCAGCAATAGCAGCAGCAGTGGTTCCTCTTCCACCTTCTTCCTCGAC
AACCTCTTCACCCCACAAGTGGCCTTAGCTGTTCGTCAGGATTCTTCTGC
CGGCCTCCCACCCTCCACCTTCCAAGTCCTCTTCCATGCCCTTAACACAA
GCGCCGTCCTGGCCGTGCTTGCTTGTCTAGGATTCGGTGTTCCTGCTTCG
CCTATCTCCGCCTGGCATCTGCAGCACGTGGACCCGCTACACGAATCCGG
CCTCTTGTCACACATCGCGGAGAGCCCAATTCTGACACTGACGCACCGGG
AGAGCGAGTACCTGTATGCCCTCCCTCCCTCCCTTCCTTCCTCCTCTTTC
TGCCTAGCATCACCACTACCACCCTTCCCGCCAGCGCCGTTCCTCATTCG
AGCCTTCCCCCCGCAATTGTATGAACACAAAGGTACTTTGAAGGATGGGT
ATGAATTGACGTGTAACGATATTTCATTGTGTGCAGTGTATAGAAGAGAG
GAGGAAGGAGGGGCCTGGAGGCTGCAAACAACAGCAACATTCAGAGGGAG
GGGGTATGAAGGGGAGTTACTGAAGTACGTTTTGAATGATAGGCGGGCGA
AGGGAGGGAGAGAAAAAGAGGAGGTCATGAAGGTGTGGGTAAGGTATGAC
GACGATGGGGAAGAGGGGAAGGAGGTCGGGGCCGTTGGAGGGCTGGTAGG
CGAGAAGGGGATCTTGGAGGGCATGGGATCAAGGTGTTTGGGAGTGGGGG
TGGATTTATGGGTGGCGCACCAGTCGCAATAGTAGCAACAACAGTAACAG
CGGCAGCGAGAGCAGAAGCAGGAGCAGGGGCAGGAGCAGGAGCAGTAGAA
GAAGTACTGATGAGATAATTTTGATTTACAAAGTGAAAGGAAAGGGCATA
AGGGGATAAATAAATGTG
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protein sequence of NO04G02620.1

>NO04G02620.1-protein ID=NO04G02620.1-protein|Name=NO04G02620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=431bp
MEVDNVDTIIASPDKKRTKLDTMDNDSDDDDFFDRMVGAATSADAEETLV
MGSEEQSPPHHENDGREQDEDAEWCRAMQEHAMATSVVKDEADPIWFEHI
LRGVLGHSGGTDIAAYALDTDVKIIILTRFLGARRGGGEASLLSKSLLWD
AVEQATLTTASSKLNSSSYSSSSNSSSSGSSSTFFLDNLFTPQVALAVRQ
DSSAGLPPSTFQVLFHALNTSAVLAVLACLGFGVPASPISAWHLQHVDPL
HESGLLSHIAESPILTLTHRESEYLYALPPSLPSSSFCLASPLPPFPPAP
FLIRAFPPQLYEHKGTLKDGYELTCNDISLCAVYRREEEGGAWRLQTTAT
FRGRGYEGELLKYVLNDRRAKGGREKEEVMKVWVRYDDDGEEGKEVGAVG
GLVGEKGILEGMGSRCLGVGVDLWVAHQSQ*
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Synonyms
Publications