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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr4 | genome | chr4:635786..638064 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO04G02210.1 vs.
Match: EWM28630.1 (hypothetical protein Naga_100182g13 [Nannochloropsis gaditana]) HSP 1 Score: 99.8 bits (247), Expect = 2.000e-17 Identity = 101/276 (36.59%), Postives = 134/276 (48.55%), Query Frame = 0
Query: 5 LASSRRRERVLLGLDQAFAPSLATASSSRNTVAGTESVGAAAGQAGGTTASSNNALYAELPTQI-----STIDIRLRSDKTATPTT--VEGALQDLLLRNTKDLQLKGKTVTLDNVRGQKEHQQKEVRLRRQLLRGRTRFSVRIVEEGGKTATTGIEGNKADNDNDDTLSNNRKRKRKRWVASPQDYVALEGAWQGYMQQLLGVHKEEKEEKKKQEDEGRETEDRDSNVNVGAVMASRSSSAKPAFSSKRSAERNVVGADMHGAPLRVVASKCPSE 274
L SSRRRER+LLGLDQAF S + R + + T S+ Y++LP+ + S + + + P+T VE LQ LLLRN+KDLQL+GKTV++DN RGQ E Q R RQ R TR SVR G I GN + S++ KRK R VAS Y L+ AWQGY Q LL + +E K + R + + SSS K K+S ER++ AD G ++++ SKC SE
Sbjct: 8 LGSSRRRERILLGLDQAFGISTVGEAERRKDKVSSSNQEV--------TMSTKEPYYSDLPSHLWEALKSASEEKSLQSEDVLPSTSSVEDVLQRLLLRNSKDLQLRGKTVSMDNARGQNE--QLRSRASRQQTRRCTRLSVRTSNLGNSL----ISGNGVE-------SSDVKRK-PRDVASLDSYEGLKSAWQGYAQDLLTLCQENAMRTKGGMSPISPAQSRQN-------ILPCSSSLKR--GPKKSLERSLAMADFSGCQIKILDSKCVSE 252
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G02210.1 ID=NO04G02210.1|Name=NO04G02210.1|organism=Nannochloropsis oceanica|type=mRNA|length=2205bp
GGAGGACTAGCTTGCTGATGGGCATTTCATTGATGATTTATTCTTTGTCG
GCAACCACAGGGACTTCTTGACAAAGTTCCCAACCATACCGACAGGTAGA
AAAGGAACTTATGCAGCCGGCCCCGCTAGTCTGCTAATTAGAAGACCGTA
TCAGCGCTTTGCTTGGTGATTTTTCGCGGGCAGCCATGTTTCCGACCTCC
CCGATACCTCCCCATGGACTCTGAGTCGACGGTCGATATTGCATCCCCCA
CCCACACAGCATGTTCACAGGTCTGGCCAGCAGCAGGAGACGGGAGCGTG
TCCTTCTGGGTCTCGATCAGGCCTTTGCTCCCTCTCTCGCGACGGCATCA
TCGTCTCGAAATACGGTGGCGGGAACAGAGTCCGTAGGAGCAGCAGCAGG
CCAAGCAGGAGGCACGACCGCCAGCAGTAACAACGCCTTGTACGCAGAAT
TGCCGACACAGATATCGACGATTGACATACGATTACGCAGTGATAAGACG
GCCACTCCCACCACTGTCGAAGGCGCTTTGCAAGACCTTCTGTTGCGCAA
CACCAAAGACCTACAACTCAAAGGGAAAACCGTTACTTTAGACAACGTGC
GTGGACAGAAAGAACATCAACAGAAGGAGGTCCGCCTGCGTCGGCAGCTG
CTGAGAGGACGGACACGTTTCTCGGTCCGTATTGTAGAGGAAGGAGGAAA
AACTGCAACAACGGGCATAGAAGGAAATAAGGCTGATAACGATAATGATG
ACACATTAAGCAACAATAGAAAAAGGAAGAGGAAGAGATGGGTGGCTTCT
CCTCAAGATTACGTGGCGTTGGAAGGAGCCTGGCAAGGGTACATGCAGCA
ACTATTGGGCGTACACAAGGAGGAGAAAGAGGAGAAGAAGAAGCAGGAGG
ATGAAGGGAGGGAGACAGAGGACCGAGATAGCAACGTCAATGTTGGAGCT
GTCATGGCATCAAGAAGCAGCAGCGCCAAGCCTGCTTTCTCGTCGAAGAG
AAGCGCCGAGAGGAATGTGGTAGGAGCTGACATGCATGGGGCCCCGCTGC
GTGTGGTGGCTTCCAAGTGCCCTTCAGAGGTGGGTTTGGAAGGATTAGTT
CTACGAGAGAGCCGTGGGGCCTTGCACATACTGCCAATGTCGGACGGGCA
TCGACGGGTGAGAATCGTGCCGAAAGCCGGGCGTCGTTTTCAGGCCACGG
TGGGGGTAGGGAGAAATAAAGCAGGTGGGGGGGGGAGTGCAGGTGGGAGT
GAAGGTAAGAAGGAGTTGAAATTAATTCTGCATGGTAACGGATTGGTGGG
TCGAGGGCGGGCGATTGCGTCACCCTTATTGATAAGGCGGGATAAGGGCG
GGGGAGGGGAAGCGGGGAGGTTGTTGAAAACGACGGAGGTGTAAAAAGAG
AGTGTACACATTACGTGTAATTCAAAAAAGATGACCACACCAATTATTAC
AACGGTCAGTCTTCCTCAATCCTCATGTGGACCCCTCAGGGATGCCACTA
GGATAAACGGTTGTGTATGAAAGGAGGCCACTTTTTTAAAGAGACCGCCT
ATCTCGGTGTTTCTCGGTATTGTCGCTGTGCGGTCATCGCCCACTTACGG
GACTTAACCTTGTGTCCTGTGTGTGTTGCCACCAAATCACACCATAGTTC
ATGCCTCCGCTGCATCCACTTACCCCTGCCTTACATCATATCGGTAAGTA
GCTTTGCCACTCAAGGCACGTGCATTTTCTTACCGAGGGGGCCGGACTCC
GGAGTAGGCTTGCTTTGTCACAGACAATTTGAATTGCCTTCTTGACACAG
CGACGGGTGATACTAACGCTGGCCATCGTACCAGCTTAATTTGGAGAAAG
AAAAAATTTTCAAATGACGATCAGGTGCCGCCTGACGTCCTCTTTGCGTG
GGCTGGTTGAAGCCCCTGGGGCTTGCAAGCGCAATAGCTCAGGGACGGAT
GAGCAGCGTCTGAGGAGTGCCACATGCACCCAACACCCATAATCATGGAG
GCACGGAGACAGACATAGGACCTGCTGCAGCCACTACCAAACAATCAAGG
CACAACGAATCAACAAGCGTGCTTTTGGAATGCTGGTGTCTTCACGACTA
GACCTAAAGTTGTCTTATAACTCAGAAGACATGCTTTCAGTGTCCGCTTA
ACGCTCTTGAGCATCCCTCGCTTTTGAACTCCAGCCTTATTTTGTTCCCC
ATCCC back to topprotein sequence of NO04G02210.1 >NO04G02210.1-protein ID=NO04G02210.1-protein|Name=NO04G02210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=378bp
MFTGLASSRRRERVLLGLDQAFAPSLATASSSRNTVAGTESVGAAAGQAG
GTTASSNNALYAELPTQISTIDIRLRSDKTATPTTVEGALQDLLLRNTKD
LQLKGKTVTLDNVRGQKEHQQKEVRLRRQLLRGRTRFSVRIVEEGGKTAT
TGIEGNKADNDNDDTLSNNRKRKRKRWVASPQDYVALEGAWQGYMQQLLG
VHKEEKEEKKKQEDEGRETEDRDSNVNVGAVMASRSSSAKPAFSSKRSAE
RNVVGADMHGAPLRVVASKCPSEVGLEGLVLRESRGALHILPMSDGHRRV
RIVPKAGRRFQATVGVGRNKAGGGGSAGGSEGKKELKLILHGNGLVGRGR
AIASPLLIRRDKGGGGEAGRLLKTTEV* back to topmRNA from alignment at chr4:635786..638064- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO04G02210.1 ID=NO04G02210.1|Name=NO04G02210.1|organism=Nannochloropsis oceanica|type=mRNA|length=2279bp|location=Sequence derived from alignment at chr4:635786..638064- (Nannochloropsis oceanica)
GGAGGACTAGCTTGCTGATGGGCATTTCATTGATGATTTATTCTTTGTCG
GCAACCACAGGGACTTCTTGACAAAGTTCCCAACCATACCGACAGGTAGA
AAAGGAACTTATGCAGCCGGCCCCGCTAGTCTGCTAATTAGAAGACCGTA
TCAGCGCTTTGCTTGGTGATTTTTCGCGGGCAGCCATGTTTCCGACCTCC
CCGATACCTCCCCATGGACTCTGAGTCGACGGTCGATATTGCATCCCCCA
CCCACACAGCATGTTCACAGGTCTGGCCAGCAGCAGGAGACGGGAGCGTG
TCCTTCTGGGTCTCGATCAGGCCTTTGCTCCCTCTCTCGCGACGGCATCA
TCGTCTCGAAATACGGTGGCGGGAACAGAGTCCGTAGGAGCAGCAGCAGG
CCAAGCAGGAGGCACGACCGCCAGCAGTAACAACGCCTTGTACGCAGAAT
TGCCGACACAGATATCGACGATTGACATACGATTACGCAGTGATAAGGTT
AGTTTTCTTTCTGGGGAGACCTCCGACCGCTCAATCAGCTCATTCATCCC
CTCCCCCTCTTTCTCCCCCAGACGGCCACTCCCACCACTGTCGAAGGCGC
TTTGCAAGACCTTCTGTTGCGCAACACCAAAGACCTACAACTCAAAGGGA
AAACCGTTACTTTAGACAACGTGCGTGGACAGAAAGAACATCAACAGAAG
GAGGTCCGCCTGCGTCGGCAGCTGCTGAGAGGACGGACACGTTTCTCGGT
CCGTATTGTAGAGGAAGGAGGAAAAACTGCAACAACGGGCATAGAAGGAA
ATAAGGCTGATAACGATAATGATGACACATTAAGCAACAATAGAAAAAGG
AAGAGGAAGAGATGGGTGGCTTCTCCTCAAGATTACGTGGCGTTGGAAGG
AGCCTGGCAAGGGTACATGCAGCAACTATTGGGCGTACACAAGGAGGAGA
AAGAGGAGAAGAAGAAGCAGGAGGATGAAGGGAGGGAGACAGAGGACCGA
GATAGCAACGTCAATGTTGGAGCTGTCATGGCATCAAGAAGCAGCAGCGC
CAAGCCTGCTTTCTCGTCGAAGAGAAGCGCCGAGAGGAATGTGGTAGGAG
CTGACATGCATGGGGCCCCGCTGCGTGTGGTGGCTTCCAAGTGCCCTTCA
GAGGTGGGTTTGGAAGGATTAGTTCTACGAGAGAGCCGTGGGGCCTTGCA
CATACTGCCAATGTCGGACGGGCATCGACGGGTGAGAATCGTGCCGAAAG
CCGGGCGTCGTTTTCAGGCCACGGTGGGGGTAGGGAGAAATAAAGCAGGT
GGGGGGGGGAGTGCAGGTGGGAGTGAAGGTAAGAAGGAGTTGAAATTAAT
TCTGCATGGTAACGGATTGGTGGGTCGAGGGCGGGCGATTGCGTCACCCT
TATTGATAAGGCGGGATAAGGGCGGGGGAGGGGAAGCGGGGAGGTTGTTG
AAAACGACGGAGGTGTAAAAAGAGAGTGTACACATTACGTGTAATTCAAA
AAAGATGACCACACCAATTATTACAACGGTCAGTCTTCCTCAATCCTCAT
GTGGACCCCTCAGGGATGCCACTAGGATAAACGGTTGTGTATGAAAGGAG
GCCACTTTTTTAAAGAGACCGCCTATCTCGGTGTTTCTCGGTATTGTCGC
TGTGCGGTCATCGCCCACTTACGGGACTTAACCTTGTGTCCTGTGTGTGT
TGCCACCAAATCACACCATAGTTCATGCCTCCGCTGCATCCACTTACCCC
TGCCTTACATCATATCGGTAAGTAGCTTTGCCACTCAAGGCACGTGCATT
TTCTTACCGAGGGGGCCGGACTCCGGAGTAGGCTTGCTTTGTCACAGACA
ATTTGAATTGCCTTCTTGACACAGCGACGGGTGATACTAACGCTGGCCAT
CGTACCAGCTTAATTTGGAGAAAGAAAAAATTTTCAAATGACGATCAGGT
GCCGCCTGACGTCCTCTTTGCGTGGGCTGGTTGAAGCCCCTGGGGCTTGC
AAGCGCAATAGCTCAGGGACGGATGAGCAGCGTCTGAGGAGTGCCACATG
CACCCAACACCCATAATCATGGAGGCACGGAGACAGACATAGGACCTGCT
GCAGCCACTACCAAACAATCAAGGCACAACGAATCAACAAGCGTGCTTTT
GGAATGCTGGTGTCTTCACGACTAGACCTAAAGTTGTCTTATAACTCAGA
AGACATGCTTTCAGTGTCCGCTTAACGCTCTTGAGCATCCCTCGCTTTTG
AACTCCAGCCTTATTTTGTTCCCCATCCC back to topCoding sequence (CDS) from alignment at chr4:635786..638064- >NO04G02210.1 ID=NO04G02210.1|Name=NO04G02210.1|organism=Nannochloropsis oceanica|type=CDS|length=1134bp|location=Sequence derived from alignment at chr4:635786..638064- (Nannochloropsis oceanica)
ATGTTCACAGGTCTGGCCAGCAGCAGGAGACGGGAGCGTGTCCTTCTGGG
TCTCGATCAGGCCTTTGCTCCCTCTCTCGCGACGGCATCATCGTCTCGAA
ATACGGTGGCGGGAACAGAGTCCGTAGGAGCAGCAGCAGGCCAAGCAGGA
GGCACGACCGCCAGCAGTAACAACGCCTTGTACGCAGAATTGCCGACACA
GATATCGACGATTGACATACGATTACGCAGTGATAAGACGGCCACTCCCA
CCACTGTCGAAGGCGCTTTGCAAGACCTTCTGTTGCGCAACACCAAAGAC
CTACAACTCAAAGGGAAAACCGTTACTTTAGACAACGTGCGTGGACAGAA
AGAACATCAACAGAAGGAGGTCCGCCTGCGTCGGCAGCTGCTGAGAGGAC
GGACACGTTTCTCGGTCCGTATTGTAGAGGAAGGAGGAAAAACTGCAACA
ACGGGCATAGAAGGAAATAAGGCTGATAACGATAATGATGACACATTAAG
CAACAATAGAAAAAGGAAGAGGAAGAGATGGGTGGCTTCTCCTCAAGATT
ACGTGGCGTTGGAAGGAGCCTGGCAAGGGTACATGCAGCAACTATTGGGC
GTACACAAGGAGGAGAAAGAGGAGAAGAAGAAGCAGGAGGATGAAGGGAG
GGAGACAGAGGACCGAGATAGCAACGTCAATGTTGGAGCTGTCATGGCAT
CAAGAAGCAGCAGCGCCAAGCCTGCTTTCTCGTCGAAGAGAAGCGCCGAG
AGGAATGTGGTAGGAGCTGACATGCATGGGGCCCCGCTGCGTGTGGTGGC
TTCCAAGTGCCCTTCAGAGGTGGGTTTGGAAGGATTAGTTCTACGAGAGA
GCCGTGGGGCCTTGCACATACTGCCAATGTCGGACGGGCATCGACGGGTG
AGAATCGTGCCGAAAGCCGGGCGTCGTTTTCAGGCCACGGTGGGGGTAGG
GAGAAATAAAGCAGGTGGGGGGGGGAGTGCAGGTGGGAGTGAAGGTAAGA
AGGAGTTGAAATTAATTCTGCATGGTAACGGATTGGTGGGTCGAGGGCGG
GCGATTGCGTCACCCTTATTGATAAGGCGGGATAAGGGCGGGGGAGGGGA
AGCGGGGAGGTTGTTGAAAACGACGGAGGTGTAA back to top
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