NO04G02210, NO04G02210 (gene) Nannochloropsis oceanica

Overview
NameNO04G02210
Unique NameNO04G02210
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2279
Alignment locationchr4:635786..638064 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:635786..638064 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0030677ribonuclease P complex
Vocabulary: Molecular Function
TermDefinition
GO:0004540ribonuclease activity
GO:0003723RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
Vocabulary: INTERPRO
TermDefinition
IPR023534Rof/RNase_P-like
IPR002730RNase_P/MRP_p29
Homology
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BLAST of NO04G02210 vs. NCBI_GenBank
Match: EWM28630.1 (hypothetical protein Naga_100182g13 [Nannochloropsis gaditana])

HSP 1 Score: 98.6 bits (244), Expect = 4.400e-17
Identity = 94/276 (34.06%), Postives = 124/276 (44.93%), Query Frame = 0 
Query:    5 LASSRRRERVLLGLDQAFAPSLATASSSRNTVAGTESVGAAAGQAGGTTASSNNALYAELPTQI-----STIDIRLRSDKTATPTT--VEGALQDLLLRNTKDLQLKGKTVTLDNVRGQKEHQQKEVRLRRQLLRGRTRFSVRIVEEGGKTATTGIEGNKADNXXXXXXXXXXXXXXXXWVASPQDYVALEGAWQGYMQQLLGVHKEXXXXXXXXXXXXXXXXXXXXXXXXXAVMASRSSSAKPAFSSKRSAERNVVGADMHGAPLRVVASKCPSE 274
            L SSRRRER+LLGLDQAF  S    +  R     + +           T S+    Y++LP+ +     S  + +    +   P+T  VE  LQ LLLRN+KDLQL+GKTV++DN RGQ E  Q   R  RQ  R  TR SVR    G       I GN  ++                 VAS   Y  L+ AWQGY Q LL + +E                           +   SSS K     K+S ER++  AD  G  ++++ SKC SE
Sbjct:    8 LGSSRRRERILLGLDQAFGISTVGEAERRKDKVSSSN--------QEVTMSTKEPYYSDLPSHLWEALKSASEEKSLQSEDVLPSTSSVEDVLQRLLLRNSKDLQLRGKTVSMDNARGQNE--QLRSRASRQQTRRCTRLSVRTSNLGNSL----ISGNGVESSDVKRKPRD--------VASLDSYEGLKSAWQGYAQDLLTLCQENAMRTKGGMSPISPAQSRQN-------ILPCSSSLKR--GPKKSLERSLAMADFSGCQIKILDSKCVSE 252
The following BLAST results are available for this feature:
BLAST of NO04G02210 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28630.14.400e-1734.06hypothetical protein Naga_100182g13 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL079nonsL079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR109ngnoR109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G02210.1NO04G02210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|659824gene_2014Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100182g13gene1961Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G02210.1NO04G02210.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G02210 ID=NO04G02210|Name=NO04G02210|organism=Nannochloropsis oceanica|type=gene|length=2279bp
GGAGGACTAGCTTGCTGATGGGCATTTCATTGATGATTTATTCTTTGTCG
GCAACCACAGGGACTTCTTGACAAAGTTCCCAACCATACCGACAGGTAGA
AAAGGAACTTATGCAGCCGGCCCCGCTAGTCTGCTAATTAGAAGACCGTA
TCAGCGCTTTGCTTGGTGATTTTTCGCGGGCAGCCATGTTTCCGACCTCC
CCGATACCTCCCCATGGACTCTGAGTCGACGGTCGATATTGCATCCCCCA
CCCACACAGCATGTTCACAGGTCTGGCCAGCAGCAGGAGACGGGAGCGTG
TCCTTCTGGGTCTCGATCAGGCCTTTGCTCCCTCTCTCGCGACGGCATCA
TCGTCTCGAAATACGGTGGCGGGAACAGAGTCCGTAGGAGCAGCAGCAGG
CCAAGCAGGAGGCACGACCGCCAGCAGTAACAACGCCTTGTACGCAGAAT
TGCCGACACAGATATCGACGATTGACATACGATTACGCAGTGATAAGgtt
agttttctttctggggagacctccgaccgctcaatcagctcattcatccc
ctccccctctttctcccccagACGGCCACTCCCACCACTGTCGAAGGCGC
TTTGCAAGACCTTCTGTTGCGCAACACCAAAGACCTACAACTCAAAGGGA
AAACCGTTACTTTAGACAACGTGCGTGGACAGAAAGAACATCAACAGAAG
GAGGTCCGCCTGCGTCGGCAGCTGCTGAGAGGACGGACACGTTTCTCGGT
CCGTATTGTAGAGGAAGGAGGAAAAACTGCAACAACGGGCATAGAAGGAA
ATAAGGCTGATAACGATAATGATGACACATTAAGCAACAATAGAAAAAGG
AAGAGGAAGAGATGGGTGGCTTCTCCTCAAGATTACGTGGCGTTGGAAGG
AGCCTGGCAAGGGTACATGCAGCAACTATTGGGCGTACACAAGGAGGAGA
AAGAGGAGAAGAAGAAGCAGGAGGATGAAGGGAGGGAGACAGAGGACCGA
GATAGCAACGTCAATGTTGGAGCTGTCATGGCATCAAGAAGCAGCAGCGC
CAAGCCTGCTTTCTCGTCGAAGAGAAGCGCCGAGAGGAATGTGGTAGGAG
CTGACATGCATGGGGCCCCGCTGCGTGTGGTGGCTTCCAAGTGCCCTTCA
GAGGTGGGTTTGGAAGGATTAGTTCTACGAGAGAGCCGTGGGGCCTTGCA
CATACTGCCAATGTCGGACGGGCATCGACGGGTGAGAATCGTGCCGAAAG
CCGGGCGTCGTTTTCAGGCCACGGTGGGGGTAGGGAGAAATAAAGCAGGT
GGGGGGGGGAGTGCAGGTGGGAGTGAAGGTAAGAAGGAGTTGAAATTAAT
TCTGCATGGTAACGGATTGGTGGGTCGAGGGCGGGCGATTGCGTCACCCT
TATTGATAAGGCGGGATAAGGGCGGGGGAGGGGAAGCGGGGAGGTTGTTG
AAAACGACGGAGGTGTAAAAAGAGAGTGTACACATTACGTGTAATTCAAA
AAAGATGACCACACCAATTATTACAACGGTCAGTCTTCCTCAATCCTCAT
GTGGACCCCTCAGGGATGCCACTAGGATAAACGGTTGTGTATGAAAGGAG
GCCACTTTTTTAAAGAGACCGCCTATCTCGGTGTTTCTCGGTATTGTCGC
TGTGCGGTCATCGCCCACTTACGGGACTTAACCTTGTGTCCTGTGTGTGT
TGCCACCAAATCACACCATAGTTCATGCCTCCGCTGCATCCACTTACCCC
TGCCTTACATCATATCGGTAAGTAGCTTTGCCACTCAAGGCACGTGCATT
TTCTTACCGAGGGGGCCGGACTCCGGAGTAGGCTTGCTTTGTCACAGACA
ATTTGAATTGCCTTCTTGACACAGCGACGGGTGATACTAACGCTGGCCAT
CGTACCAGCTTAATTTGGAGAAAGAAAAAATTTTCAAATGACGATCAGGT
GCCGCCTGACGTCCTCTTTGCGTGGGCTGGTTGAAGCCCCTGGGGCTTGC
AAGCGCAATAGCTCAGGGACGGATGAGCAGCGTCTGAGGAGTGCCACATG
CACCCAACACCCATAATCATGGAGGCACGGAGACAGACATAGGACCTGCT
GCAGCCACTACCAAACAATCAAGGCACAACGAATCAACAAGCGTGCTTTT
GGAATGCTGGTGTCTTCACGACTAGACCTAAAGTTGTCTTATAACTCAGA
AGACATGCTTTCAGTGTCCGCTTAACGCTCTTGAGCATCCCTCGCTTTTG
AACTCCAGCCTTATTTTGTTCCCCATCCC
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protein sequence of NO04G02210.1

>NO04G02210.1-protein ID=NO04G02210.1-protein|Name=NO04G02210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=378bp
MFTGLASSRRRERVLLGLDQAFAPSLATASSSRNTVAGTESVGAAAGQAG
GTTASSNNALYAELPTQISTIDIRLRSDKTATPTTVEGALQDLLLRNTKD
LQLKGKTVTLDNVRGQKEHQQKEVRLRRQLLRGRTRFSVRIVEEGGKTAT
TGIEGNKADNDNDDTLSNNRKRKRKRWVASPQDYVALEGAWQGYMQQLLG
VHKEEKEEKKKQEDEGRETEDRDSNVNVGAVMASRSSSAKPAFSSKRSAE
RNVVGADMHGAPLRVVASKCPSEVGLEGLVLRESRGALHILPMSDGHRRV
RIVPKAGRRFQATVGVGRNKAGGGGSAGGSEGKKELKLILHGNGLVGRGR
AIASPLLIRRDKGGGGEAGRLLKTTEV*
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Synonyms
Publications