NO04G02000.1, NO04G02000.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G02000.1
Unique NameNO04G02000.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length504
Alignment locationchr4:582804..583307 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:582804..583307 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G02000.1 vs.
Match: EWM28556.1 (Ribosomal protein L49/IMG2 [Nannochloropsis gaditana])

HSP 1 Score: 285.4 bits (729), Expect = 1.100e-73
Identity = 141/167 (84.43%), Postives = 148/167 (88.62%), Query Frame = 0 
Query:    1 MERVSPLLGRFGGHLRKHSNSAKKRIFGSRKYYEEVIKPAREEAANAPPTPLKYPLTYTPERVLPNGWSAPPDPAMMGATSLPRDTLPFQVERTDKGRWLPVYTDVRKGRTQLITMVRKVSGDLEEMRQEMSKVCANQEVRIRTGPRLEVKGRYTTQLRGWLAGLGF 168
            MER SPLL RFGGHLRKHSN AKKRIFGSR  YE+VI+PARE+AA  PP PLKYP TY P RVLPNGWSAPPDPA +G   LP+ +LPFQVERTDKGRWLPVYTDVRKGRTQLIT+VRKVSGDLEEMR EMSKVCANQEVRIRTGPRLEVKGRYT QLR WLAGLGF
Sbjct:    1 MERASPLLARFGGHLRKHSNRAKKRIFGSRTRYEDVIRPAREQAAAEPPAPLKYPPTYQPSRVLPNGWSAPPDPATVG---LPKTSLPFQVERTDKGRWLPVYTDVRKGRTQLITLVRKVSGDLEEMRGEMSKVCANQEVRIRTGPRLEVKGRYTAQLRQWLAGLGF 164
The following BLAST results are available for this feature:
BLAST of NO04G02000.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28556.11.100e-7384.43Ribosomal protein L49/IMG2 [Nannochloropsis gadita... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G02000NO04G02000Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G02000.1NO04G02000.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G02000.1.cds1NO04G02000.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G02000.1 ID=NO04G02000.1|Name=NO04G02000.1|organism=Nannochloropsis oceanica|type=mRNA|length=504bp
ATGGAGCGTGTCTCGCCTCTCTTGGGCCGCTTTGGGGGCCACCTGCGCAA
GCACTCCAACAGCGCCAAGAAGCGTATCTTTGGCAGTCGCAAGTACTACG
AGGAAGTCATCAAACCTGCCCGGGAAGAGGCCGCCAATGCCCCCCCGACT
CCTCTTAAGTACCCACTCACGTATACGCCTGAGCGGGTCTTGCCCAATGG
ATGGTCTGCGCCACCCGACCCAGCTATGATGGGCGCCACCTCCTTGCCTC
GCGACACCCTCCCCTTCCAAGTCGAACGGACAGACAAAGGCCGATGGCTT
CCCGTGTACACAGACGTGCGAAAAGGCCGCACGCAGCTGATTACGATGGT
GCGCAAGGTCTCGGGCGACCTGGAAGAGATGCGGCAGGAAATGTCCAAGG
TGTGTGCGAACCAGGAGGTTAGAATACGGACGGGCCCGCGGTTGGAGGTC
AAAGGCCGATACACGACGCAACTACGGGGTTGGTTGGCGGGCTTAGGGTT
CTAG
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protein sequence of NO04G02000.1

>NO04G02000.1-protein ID=NO04G02000.1-protein|Name=NO04G02000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=168bp
MERVSPLLGRFGGHLRKHSNSAKKRIFGSRKYYEEVIKPAREEAANAPPT
PLKYPLTYTPERVLPNGWSAPPDPAMMGATSLPRDTLPFQVERTDKGRWL
PVYTDVRKGRTQLITMVRKVSGDLEEMRQEMSKVCANQEVRIRTGPRLEV
KGRYTTQLRGWLAGLGF*
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mRNA from alignment at chr4:582804..583307-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G02000.1 ID=NO04G02000.1|Name=NO04G02000.1|organism=Nannochloropsis oceanica|type=mRNA|length=504bp|location=Sequence derived from alignment at chr4:582804..583307- (Nannochloropsis oceanica)
ATGGAGCGTGTCTCGCCTCTCTTGGGCCGCTTTGGGGGCCACCTGCGCAA
GCACTCCAACAGCGCCAAGAAGCGTATCTTTGGCAGTCGCAAGTACTACG
AGGAAGTCATCAAACCTGCCCGGGAAGAGGCCGCCAATGCCCCCCCGACT
CCTCTTAAGTACCCACTCACGTATACGCCTGAGCGGGTCTTGCCCAATGG
ATGGTCTGCGCCACCCGACCCAGCTATGATGGGCGCCACCTCCTTGCCTC
GCGACACCCTCCCCTTCCAAGTCGAACGGACAGACAAAGGCCGATGGCTT
CCCGTGTACACAGACGTGCGAAAAGGCCGCACGCAGCTGATTACGATGGT
GCGCAAGGTCTCGGGCGACCTGGAAGAGATGCGGCAGGAAATGTCCAAGG
TGTGTGCGAACCAGGAGGTTAGAATACGGACGGGCCCGCGGTTGGAGGTC
AAAGGCCGATACACGACGCAACTACGGGGTTGGTTGGCGGGCTTAGGGTT
CTAG
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Coding sequence (CDS) from alignment at chr4:582804..583307-

>NO04G02000.1 ID=NO04G02000.1|Name=NO04G02000.1|organism=Nannochloropsis oceanica|type=CDS|length=504bp|location=Sequence derived from alignment at chr4:582804..583307- (Nannochloropsis oceanica)
ATGGAGCGTGTCTCGCCTCTCTTGGGCCGCTTTGGGGGCCACCTGCGCAA
GCACTCCAACAGCGCCAAGAAGCGTATCTTTGGCAGTCGCAAGTACTACG
AGGAAGTCATCAAACCTGCCCGGGAAGAGGCCGCCAATGCCCCCCCGACT
CCTCTTAAGTACCCACTCACGTATACGCCTGAGCGGGTCTTGCCCAATGG
ATGGTCTGCGCCACCCGACCCAGCTATGATGGGCGCCACCTCCTTGCCTC
GCGACACCCTCCCCTTCCAAGTCGAACGGACAGACAAAGGCCGATGGCTT
CCCGTGTACACAGACGTGCGAAAAGGCCGCACGCAGCTGATTACGATGGT
GCGCAAGGTCTCGGGCGACCTGGAAGAGATGCGGCAGGAAATGTCCAAGG
TGTGTGCGAACCAGGAGGTTAGAATACGGACGGGCCCGCGGTTGGAGGTC
AAAGGCCGATACACGACGCAACTACGGGGTTGGTTGGCGGGCTTAGGGTT
CTAG
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Synonyms
Publications