NO04G02000, NO04G02000 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO04G02000 vs. NCBI_GenBank
Match: EWM28556.1 (Ribosomal protein L49/IMG2 [Nannochloropsis gaditana]) HSP 1 Score: 285.4 bits (729), Expect = 1.100e-73 Identity = 141/167 (84.43%), Postives = 148/167 (88.62%), Query Frame = 0 Query: 1 MERVSPLLGRFGGHLRKHSNSAKKRIFGSRKYYEEVIKPAREEAANAPPTPLKYPLTYTPERVLPNGWSAPPDPAMMGATSLPRDTLPFQVERTDKGRWLPVYTDVRKGRTQLITMVRKVSGDLEEMRQEMSKVCANQEVRIRTGPRLEVKGRYTTQLRGWLAGLGF 168 MER SPLL RFGGHLRKHSN AKKRIFGSR YE+VI+PARE+AA PP PLKYP TY P RVLPNGWSAPPDPA +G LP+ +LPFQVERTDKGRWLPVYTDVRKGRTQLIT+VRKVSGDLEEMR EMSKVCANQEVRIRTGPRLEVKGRYT QLR WLAGLGF Sbjct: 1 MERASPLLARFGGHLRKHSNRAKKRIFGSRTRYEDVIRPAREQAAAEPPAPLKYPPTYQPSRVLPNGWSAPPDPATVG---LPKTSLPFQVERTDKGRWLPVYTDVRKGRTQLITLVRKVSGDLEEMRGEMSKVCANQEVRIRTGPRLEVKGRYTAQLRQWLAGLGF 164
BLAST of NO04G02000 vs. NCBI_GenBank
Match: XP_009519864.1 (hypothetical protein PHYSODRAFT_252435 [Phytophthora sojae] >EGZ24576.1 hypothetical protein PHYSODRAFT_252435 [Phytophthora sojae]) HSP 1 Score: 117.5 bits (293), Expect = 4.100e-23 Identity = 68/155 (43.87%), Postives = 91/155 (58.71%), Query Frame = 0 Query: 19 SNSAKKRIFGSRKYYEEVIKPAREEAANAPP------TPLKYPLTYTPERVLPNGWSAPPDPAMMGATSLPRDTLPFQVERTDKGRWLPVYTDVRKGRTQLITMVRKVSGDLEEMRQEMSKVCANQEVRIRTGPRLEVKGRYTTQLRGWLAGLGF 168 S +A +R+ +R+ + PA A P PLKY TY PE+V NGWS P+ + G LPFQV+RT G LPVY D R GRT+++T++R+ GD +E+R EMSKVC +EV +R G RLEV G + + +R WL GLGF Sbjct: 9 SVNAVERVASNRQIRRKARHPANLRALQRQPQEEVVVPPLKYEPTYVPEKVSFNGWSPAPEAPLPG--------LPFQVKRTAVGMQLPVYRDFRNGRTRVLTILRRYKGDEQELRDEMSKVCQGKEVVVRPG-RLEVVGDHASDIRKWLVGLGF 154
BLAST of NO04G02000 vs. NCBI_GenBank
Match: XP_002903250.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY55674.1 conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 116.3 bits (290), Expect = 9.100e-23 Identity = 67/155 (43.23%), Postives = 90/155 (58.06%), Query Frame = 0 Query: 19 SNSAKKRIFGSRKYYEEVIKPAREEAANAPP------TPLKYPLTYTPERVLPNGWSAPPDPAMMGATSLPRDTLPFQVERTDKGRWLPVYTDVRKGRTQLITMVRKVSGDLEEMRQEMSKVCANQEVRIRTGPRLEVKGRYTTQLRGWLAGLGF 168 S +A +R+ +R+ + PA A P PLKY TY PE+V NGWS P+ + G LPF V+RT G LPVY D R GRT+++T++R+ GD +E+R EMSKVC +EV +R G RLEV G + + +R WL GLGF Sbjct: 9 SVNAVERVASNRQIRRKTRHPANLRALQRQPQEEVVVPPLKYEPTYVPEKVSFNGWSPAPEAPLSG--------LPFHVKRTATGMQLPVYRDFRNGRTRVLTILRRYKGDEQELRDEMSKVCQGKEVIVRPG-RLEVVGDHASDIRKWLVGLGF 154
BLAST of NO04G02000 vs. NCBI_GenBank
Match: XP_008893337.1 (hypothetical protein PPTG_01705 [Phytophthora parasitica INRA-310] >ETI45080.1 hypothetical protein F443_10260 [Phytophthora parasitica P1569] >ETK85055.1 hypothetical protein L915_10035 [Phytophthora parasitica] >ETL38477.1 hypothetical protein L916_09942 [Phytophthora parasitica] >ETL91597.1 hypothetical protein L917_09865 [Phytophthora parasitica] >ETM44891.1 hypothetical protein L914_09916 [Phytophthora parasitica] >ETN21556.1 hypothetical protein PPTG_01705 [Phytophthora parasitica INRA-310] >ETO73743.1 hypothetical protein F444_10359 [Phytophthora parasitica P1976] >ETP14897.1 hypothetical protein F441_10197 [Phytophthora parasitica CJ01A1] >ETP42965.1 hypothetical protein F442_10164 [Phytophthora parasitica P10297]) HSP 1 Score: 115.5 bits (288), Expect = 1.500e-22 Identity = 67/155 (43.23%), Postives = 90/155 (58.06%), Query Frame = 0 Query: 19 SNSAKKRIFGSRKYYEEVIKPAREEAANAPP------TPLKYPLTYTPERVLPNGWSAPPDPAMMGATSLPRDTLPFQVERTDKGRWLPVYTDVRKGRTQLITMVRKVSGDLEEMRQEMSKVCANQEVRIRTGPRLEVKGRYTTQLRGWLAGLGF 168 S +A +R+ +R+ + PA A P PLKY TY PE+V NGWS P+ + G LPF V+RT G LPVY D R GRT+++T++R+ GD +E+R EMSKVC +EV +R G RLEV G + + +R WL GLGF Sbjct: 9 SANAVERVASNRQIRRKTRHPANLRALQRQPQEEVVVPPLKYEPTYVPEKVSFNGWSPAPEAPLPG--------LPFHVKRTAVGLQLPVYRDFRNGRTRVLTILRRYKGDEQELRDEMSKVCQGKEVIVRPG-RLEVVGDHASDIRKWLVGLGF 154
BLAST of NO04G02000 vs. NCBI_GenBank
Match: KUF80785.1 (hypothetical protein AM587_10014489 [Phytophthora nicotianae] >KUF90810.1 hypothetical protein AM587_10013837 [Phytophthora nicotianae]) HSP 1 Score: 115.5 bits (288), Expect = 1.500e-22 Identity = 67/155 (43.23%), Postives = 90/155 (58.06%), Query Frame = 0 Query: 19 SNSAKKRIFGSRKYYEEVIKPAREEAANAPP------TPLKYPLTYTPERVLPNGWSAPPDPAMMGATSLPRDTLPFQVERTDKGRWLPVYTDVRKGRTQLITMVRKVSGDLEEMRQEMSKVCANQEVRIRTGPRLEVKGRYTTQLRGWLAGLGF 168 S +A +R+ +R+ + PA A P PLKY TY PE+V NGWS P+ + G LPF V+RT G LPVY D R GRT+++T++R+ GD +E+R EMSKVC +EV +R G RLEV G + + +R WL GLGF Sbjct: 129 SANAVERVASNRQIRRKTRHPANLRALQRQPQEEVVVPPLKYEPTYVPEKVSFNGWSPAPEAPLPG--------LPFHVKRTAVGLQLPVYRDFRNGRTRVLTILRRYKGDEQELRDEMSKVCQGKEVIVRPG-RLEVVGDHASDIRKWLVGLGF 274
BLAST of NO04G02000 vs. NCBI_GenBank
Match: POM74066.1 (Hypothetical protein PHPALM_9022 [Phytophthora palmivora var. palmivora]) HSP 1 Score: 115.5 bits (288), Expect = 1.500e-22 Identity = 67/155 (43.23%), Postives = 90/155 (58.06%), Query Frame = 0 Query: 19 SNSAKKRIFGSRKYYEEVIKPAREEAANAPP------TPLKYPLTYTPERVLPNGWSAPPDPAMMGATSLPRDTLPFQVERTDKGRWLPVYTDVRKGRTQLITMVRKVSGDLEEMRQEMSKVCANQEVRIRTGPRLEVKGRYTTQLRGWLAGLGF 168 S +A +R+ +R+ + PA A P PLKY TY PE+V NGWS P+ + G LPF V+RT G LPVY D R GRT+++T++R+ GD +E+R EMSKVC +EV +R G RLEV G + + +R WL GLGF Sbjct: 9 SANAVERVASNRQIRRKTRHPANLRALQRQPQEEVVVPPLKYEPTYVPEKVSFNGWSPAPETPLPG--------LPFHVKRTAVGLQLPVYRDFRNGRTRVLTILRRYKGDEQELRDEMSKVCQGKEVVVRPG-RLEVVGDHASDIRKWLVGLGF 154
BLAST of NO04G02000 vs. NCBI_GenBank
Match: XP_002903158.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY55582.1 conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 113.6 bits (283), Expect = 5.900e-22 Identity = 66/155 (42.58%), Postives = 89/155 (57.42%), Query Frame = 0 Query: 19 SNSAKKRIFGSRKYYEEVIKPAREEAANAPP------TPLKYPLTYTPERVLPNGWSAPPDPAMMGATSLPRDTLPFQVERTDKGRWLPVYTDVRKGRTQLITMVRKVSGDLEEMRQEMSKVCANQEVRIRTGPRLEVKGRYTTQLRGWLAGLGF 168 S +A +R+ +R+ + PA A P PLKY TY PE+V NGWS P+ + G LPF V+RT G LPVY D R GRT+++T++R+ GD + +R EMSKVC +EV +R G RLEV G + + +R WL GLGF Sbjct: 9 SVNAVERVASNRQIRRKTRHPANLRALQRQPQEEVVVPPLKYEPTYVPEKVSFNGWSPAPEAPLSG--------LPFHVKRTATGMQLPVYRDFRNGRTRVLTILRRYKGDEQGLRDEMSKVCQGKEVIVRPG-RLEVVGDHASDIRKWLVGLGF 154
BLAST of NO04G02000 vs. NCBI_GenBank
Match: CCA24515.1 (conserved hypothetical protein [Albugo laibachii Nc14]) HSP 1 Score: 104.8 bits (260), Expect = 2.700e-19 Identity = 57/117 (48.72%), Postives = 73/117 (62.39%), Query Frame = 0 Query: 51 PLKYPLTYTPERVLPNGWSAPPDPAMMGATSLPRDTLPFQVERTDKGRWLPVYTDVRKGRTQLITMVRKVSGDLEEMRQEMSKVCANQEVRIRTGPRLEVKGRYTTQLRGWLAGLGF 168 PLKY TY PE V NGWS P+ + G +PF+V+RT KG LPVY D R GRT+++T++R+ G E++ EMSKVC ++V R G RLEV G + LR WL GLGF Sbjct: 48 PLKYEPTYIPENVSFNGWSPAPENPLPG--------IPFKVKRTAKGLQLPVYRDYRNGRTRVLTILRRYDGHEGELQSEMSKVCGGKDVIARPG-RLEVVGDHLMDLRKWLTGLGF 155
BLAST of NO04G02000 vs. NCBI_GenBank
Match: XP_012200434.1 (hypothetical protein SPRG_05761 [Saprolegnia parasitica CBS 223.65] >KDO28890.1 hypothetical protein SPRG_05761 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 104.4 bits (259), Expect = 3.600e-19 Identity = 68/152 (44.74%), Postives = 90/152 (59.21%), Query Frame = 0 Query: 21 SAKKRIFGSRKYYEEVIKPAREEAANAPPTP-----LKYPLTYTPERVLPNGWSAPPDPAMMGATSLPRDTLPFQVERTDKGRWLPVYTDVRKGRTQLITMVRKVSGDLEEMRQEMSKVCANQEVRIRTGPRLEVKGRYTTQLRGWLAGLGF 168 +++++I K+ + K AR+EA N PTP LKY TY PE+V NGWS PA P + LPF V+RT G LPVY D R GRT++IT+VR+ GD E++QE+S VC V R G RLEV G Y+ Q++ + GLGF Sbjct: 17 ASQRQINRKLKHPATLRKLARKEAEN--PTPEVVRSLKYEPTYVPEKVSFNGWS----PARAEG---PLEGLPFTVKRTSTGLQLPVYRDYRNGRTRIITIVRRFDGDEAELQQELSTVCDGSPVLSRPG-RLEVVGDYSHQIKQYFTGLGF 158
BLAST of NO04G02000 vs. NCBI_GenBank
Match: XP_008614403.1 (hypothetical protein SDRG_10201 [Saprolegnia diclina VS20] >EQC32001.1 hypothetical protein SDRG_10201 [Saprolegnia diclina VS20]) HSP 1 Score: 104.0 bits (258), Expect = 4.700e-19 Identity = 68/152 (44.74%), Postives = 90/152 (59.21%), Query Frame = 0 Query: 21 SAKKRIFGSRKYYEEVIKPAREEAANAPPTP-----LKYPLTYTPERVLPNGWSAPPDPAMMGATSLPRDTLPFQVERTDKGRWLPVYTDVRKGRTQLITMVRKVSGDLEEMRQEMSKVCANQEVRIRTGPRLEVKGRYTTQLRGWLAGLGF 168 +++++I K+ + K AR+EA N PTP LKY TY PE+V NGWS PA P + LPF V+RT G LPVY D R GRT++IT+VR+ GD E++QE+S VC V R G RLEV G Y+ Q++ + GLGF Sbjct: 17 ASQRQINRKLKHPATLRKLARKEAEN--PTPEVVRTLKYEPTYVPEKVSFNGWS----PARAEG---PVEGLPFTVKRTSTGLQLPVYRDYRNGRTRIITIVRRFDGDEAELQQELSTVCDGSPVLSRPG-RLEVVGDYSHQIKQYFTGLGF 158 The following BLAST results are available for this feature:
BLAST of NO04G02000 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO04G02000 ID=NO04G02000|Name=NO04G02000|organism=Nannochloropsis oceanica|type=gene|length=504bpback to top protein sequence of NO04G02000.1 >NO04G02000.1-protein ID=NO04G02000.1-protein|Name=NO04G02000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=168bpback to top Synonyms
Publications
|