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Properties
| Property Name | Value |
|---|
| Description | PUB domain protein |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr4 | genome | chr4:540846..544998 + |
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO04G01860 vs. NCBI_GenBank
Match: EWM28614.1 (PUB domain protein [Nannochloropsis gaditana]) HSP 1 Score: 268.1 bits (684), Expect = 9.500e-68 Identity = 244/374 (65.24%), Postives = 281/374 (75.13%), Query Frame = 0
Query: 1 MEFRHTVEKLDAIDAKLTAIEALAPDQPSALASEADALENLHTELTTSMSQTFAKLQKRCQDVDPITQKPIYGETQQKKVTEAYKLYTALLSRVVALRAGPMDMACRQAEAARKAEEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWAEARAEDVALVASIPKGVVGAEAGLSLLRGVCGGEATKSYKEAVAALALYVGNVISNPEEATYKRVRLQGVHYRTKVGVHGPGGMRCLVAAGFQM--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPGARVLVMIEPDMMERQAEWTAWYDACKGVRDRLEEELTRVKR 373
MEFR+T+ L++I+ +LT IEA DQP LASEA ALE LH++LTTS+S+TFAKLQKRCQ+VDPITQK +YG+ + +V EA+ Y++LL RVV L+ GPM+ AC AE R A E XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ARAED ALV SI G GAE L LR CGGEATK+YKEAVA LALYVGN+I++PEEA +KR+ L+G H+++K+G GPG + CLVAAGFQ+ XXXXXXXXXXXXXXXXXXX LPGARVL+MIEPDMM Q EWT WY+ CKGVRD L++E RVKR
Sbjct: 1 MEFRNTLATLESIETRLTCIEA-TQDQPEVLASEAGALEELHSDLTTSLSRTFAKLQKRCQEVDPITQKTLYGDAMKARVAEAFSRYSSLLQRVVELKNGPMEKACHDAENVRLAAESQARLARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARAEDAALVDSILPGARGAEEALINLRHACGGEATKAYKEAVATLALYVGNIIAHPEEAAFKRISLEGAHFKSKLGPWGPGSLHCLVAAGFQVQREEEDEGGKGGQGEDSRTADXXXXXXXXXXXXXXXXXXXKEGEIVLPGARVLLMIEPDMMRHQEEWTVWYETCKGVRDLLQQEEARVKR 373
The following BLAST results are available for this feature:
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO04G01860 ID=NO04G01860|Name=NO04G01860|organism=Nannochloropsis oceanica|type=gene|length=4153bp
ATGGAATTTCGACACACCGTGGAGAAGCTGGATGCCATCGgtacgtctcc
aattagtctgagagaggtcccccatctcacctcgccctcccttccctccg
tcccttctccacgcctcacgtcccagtccagttcgctttctgcctctcca
ttctgtccttgtcgttcgcatgccccgttcctactcactagtcctttgta
actccaccacacctcaagACGCCAAGCTCACGGCCATAGAAGCTCTTGCC
CCAGACCAACCCTCTGCCTTGGCAAGCGAGGCTGACGCCCTTGAAAATCT
CCACACTGAGCTCACGACGTCCATGTCCCAAACTTTCGCAAAGCTTCAAA
AGCGCTGCCAAGACGTGGATCCCATCACACAAAAACCCATTTACGGGGAG
ACGCAACAAAAGAAAGTCACAGAGGCCTACAAGCTCTACACCGCACTCCT
CTCACGCGTCGTCGCCCTCCGGGCTGGCCCTATGGACATGGCCTGTCGCC
AGGCCGAAGCTGCACGCAAAGCAGAGGAAATGCAGGGGGAAAAAGCACAA
GAAGAAGCAGCAACGGCGCAAGCCCGGCAGCAAGAGGAGGTGGCAAAGGC
TCAACAAGAGGCACAAGCAGCAGAAGCCCGTCGACTTGCCTTTGAGGCAA
ACCAACGTGCTGCTCTCAGCAGCGATGCAGCCCGAGCCCGCGAGGACAAG
AAGCGAATGCGCAAGCAGAATGAAGAGGCAGCGGCGCGAAAATGGGCAGA
GGCACGAGCGGAAGACGTGGCTTTGGTGGCTTCCATTCCCAAGGGAGTAG
TGGGGGCCGAGGCAGGGCTTTCCCTCCTCCGGGGGGTGTGCGGGGGCGAG
GCGACGAAATCGTATAAGGAAGCGGTGGCGgtacgtgattatatttttct
gctgtcgcatttgtgtttcttgttgtccattaaatccttcgttgtatcgg
gatataaatccctatccctcttttgctttcgggtgtgcccggtatgccaa
tcttattggcggggctacgggtctacggctttccttgttttaaaatacag
cctcactcatattcacttcaacccctgcccccctcagGCCCTGGCACTAT
ACGTGGGCAACGTGATTTCAAACCCGGAGGAAGCCACGTACAAACGCGTG
CGGTTGCAAGGCGTACATTACAGAACAAAGGTAGGGGTGCACGGTCCAGG
GGGAATGCGGTGCCTCGTGGCAGCAGGATTTCAGATGCAGCGGGAAGAGG
AAGAGGAAGGGAAAGATGGAGGAAGGGAAGGAGGGGCGAGGAGGCCGAGT
GGGACTGGCCAGGGATCGACTGTGATTGGAGGGGATGAAGAGGAAGAGGA
GAAGGAGGGGGGTATTGTGTTGCCAGGGGCGAGGGTGTTAGTAATGATAG
AGCCGGATATGATGGAGAGGCAGGCGGAATGGACGGCGTGGTATGATGCA
TGTAAGGGAGTGAGGGATCGTTTGGAGGAGGAGTTGACAAGGgtgaggag
gttgtagggcgggagaaaaaaatgaagagaaaattggtactgctgtaata
cgcaacacttcttaattatttttcctttttgtggttcctttttcggaatg
tccttcgagaagtagcaaccaaaattgtaagaaaatgttgcctctgataa
agcgtcacgtcctgtgggaaaggcaaaaaagtgagggaggtatcaggcgt
aaagtatcaaaagtattaagacacaaaaaaatgtcattctatttatgtct
aagattgctcctggtatccgtttctgcctcgccaaaggcggtttgagtga
tcgaatttgggaaatgtggccgcattattgggacaaaggttgagatgagg
cgggaagagggaagaatttgggggtggaagatgagtggacgatcatgtga
ttagtgcccagtggcttggtttggatcgaagagagatattctcaggcata
caatattaaccatactcttttgtttacgcaggcaaggcccctttcattgc
aataaaagcacagggtgttttgaggcccattctctcaccgcccctcctac
ccgcgctccatccatacacaaggttttgcacaaatattcccctagagcca
agccctccatcaataagccgcgtctcttctggcgtcctctgcaagGTGAA
GCGTCATAACTCCGAGCCTGAGGATGACGAGAGCGAGGAGGACATCAGCT
TCGACAGCCGTGTTGTGAATGTCCTGGCAGGGGCAGATGCCATTTTTGCC
ATCTGTGGGCAAGAACAATCACGCTCTACCGGCACTGTAGGTGCTGTCGC
GCCAAGCAAGAGAAAGGCCGCTCCCTTCTCTGTGGACCAATCCAGTGCGA
CGTGTCGAAGCAATAGCAGCGGTGCCAAAAGAAAGGGAAGCAGTAGTACC
AAATGCAAAAGCAGTAGCCGAAGCAGCAGCATCGACGTGAACGTGTATAA
AGTTAACGATGACGAGAGGGATAACAGCGAGGGCAAATACGGAAATGAGG
ACACAGCACCTTACCCCGCCTCGGTGGAGGAGGCGGCGAGGGCTCATGGC
ATGCTCGCGCTGAAAGTAAGAGGCGAGGAGGATgtgagtgcagggatgga
agcaggagcgggaggagtagagaggaagggatagtgagatagaatacgat
gtcgcaaacaaatgcagaaatatccttcattctgacgaatgctcttgccc
cctctttctttcttatgcacgcacagGCTGTCCACAACAGCGCCCTTCAC
CGGAATAGCTCTGTGGACCTGCGGGTAAATAATAAGAAAAGGCCGAAGAA
GCGACCGCGCAGTTTAGGGGAAGGCTTGAAGATCATGATAGGGAGGGATG
AGGCGAAGGGAGTAGAAGGCGGAGGTGATAAGGGAAAAGGAGGACGAGGA
GGAGGACAAGGAAGGAGACGAAGGTGGAGCGGCAAGCCGTTAGTTGGGGT
GGCAGCAGCTGCATTGGAGGGCGTGATCATTGATGACGACGGTGAAAGAG
GAAAGGGACAGGGAGACAAAGGTGAAACATGGAAGGAAGATGATACAGGC
AAGAGGGACGACAAAAAGCCCGCACGACGTATGCTGGACGTGGCTTCCAA
TGTATATGGCGgtatgtctgtgtgtgtgtgtgtgcgcttgatttgacagg
tgttctactcttgggcatggctacctgtgccacttcccccttctcttgtc
ctccctaatttccttcctccctcatttccgttgcactgaacgtgtgttgc
tgtgcactcatttatctcgacctactcctccctctatttctgtctctatc
catccatcccaccaccacctcctccctctctccatccctcccttagGCGT
GTACTTCAACAAAAAAACTAAGCAATGGGAGGCTTTTTTGGATTTACCTT
TCAAGTGGCGTTATgtgggacagagcgacacagaaagtggcagggggcgc
cagtagcagcagcagtaatagcagcagcagttgcagcagcagcagttgca
gcaaaagaaggtaaagtggagaaggaacagctgcacgtaggataggagac
tgggaggggcagagatagcatcggtggtggtggaatgagggctagGGGAG
GGAAGAAATACAACGGCCGACGCGTGGTGCGGCAGCCACTGTCTTGACTG
ATCATTACTACTTTTCTAACGCCGCTGCTGCTGCTGCTGCTCCCGATGAC
AATGGGGGCAGTGATGAAGAAGAGGAATACCCTGAGACGCTGGCCTTGTG
GCCTGCCATCCTTGCTATCACTTCTTCCACCACCACCAGCCCTGAGCATG
AAGCCGAGTCGCTGGGCGAAGAAGGCAGGGCCCTGGCCTGGAAGCGTATG
CAGAAGCTCCTCTTGACACTGGAAAACTCATCAGTGAATCGATTTCGCAT
GGATCGGGACCCCCGGACTGGACAGACGACTTATGACAAGGGCCGTTCAG
TGGTCCAGATGGCACTTACGGCCCATGCCACTACCCCCGATAAACGCACC
CCAACGACGGCACGTCGCATCGCCTGCTATTTGCATTGGCATATTTTCAC
GAAGGATGAGCCAAAGCAGCGAAGGGTGCGAATATTTGGGAACAACGAGG
CCCTTGCGGCTATTTTCTTGGTGAAGAAGGGGGCGCTGGATACGGAGGAC
TAG back to topprotein sequence of NO04G01860.1 >NO04G01860.1-protein ID=NO04G01860.1-protein|Name=NO04G01860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=852bp
MEFRHTVEKLDAIDAKLTAIEALAPDQPSALASEADALENLHTELTTSMS
QTFAKLQKRCQDVDPITQKPIYGETQQKKVTEAYKLYTALLSRVVALRAG
PMDMACRQAEAARKAEEMQGEKAQEEAATAQARQQEEVAKAQQEAQAAEA
RRLAFEANQRAALSSDAARAREDKKRMRKQNEEAAARKWAEARAEDVALV
ASIPKGVVGAEAGLSLLRGVCGGEATKSYKEAVAALALYVGNVISNPEEA
TYKRVRLQGVHYRTKVGVHGPGGMRCLVAAGFQMQREEEEEGKDGGREGG
ARRPSGTGQGSTVIGGDEEEEEKEGGIVLPGARVLVMIEPDMMERQAEWT
AWYDACKGVRDRLEEELTRVKRHNSEPEDDESEEDISFDSRVVNVLAGAD
AIFAICGQEQSRSTGTVGAVAPSKRKAAPFSVDQSSATCRSNSSGAKRKG
SSSTKCKSSSRSSSIDVNVYKVNDDERDNSEGKYGNEDTAPYPASVEEAA
RAHGMLALKVRGEEDAVHNSALHRNSSVDLRVNNKKRPKKRPRSLGEGLK
IMIGRDEAKGVEGGGDKGKGGRGGGQGRRRRWSGKPLVGVAAAALEGVII
DDDGERGKGQGDKGETWKEDDTGKRDDKKPARRMLDVASNVYGGVYFNKK
TKQWEAFLDLPFKWRYGREEIQRPTRGAAATVLTDHYYFSNAAAAAAAPD
DNGGSDEEEEYPETLALWPAILAITSSTTTSPEHEAESLGEEGRALAWKR
MQKLLLTLENSSVNRFRMDRDPRTGQTTYDKGRSVVQMALTAHATTPDKR
TPTTARRIACYLHWHIFTKDEPKQRRVRIFGNNEALAAIFLVKKGALDTE
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