NO04G01140.1, NO04G01140.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G01140.1
Unique NameNO04G01140.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2327
Alignment locationchr4:362265..364591 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:362265..364591 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO04G01140.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G01140NO04G01140Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G01140.1NO04G01140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G01140.1.cds1NO04G01140.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G01140.1 ID=NO04G01140.1|Name=NO04G01140.1|organism=Nannochloropsis oceanica|type=mRNA|length=2327bp
GGTGTGAGTGTGGGTGTTGTATCCATAAGTCGGGTGATAAGAGAGAGGAA
ATGCCATTGCTGGATCATCGAAAGGCACGAACCAACATCAAGGGCCGGAA
TGAATCGCGGATACTCGGATACTGGATATATACTATACTATACAAACTCT
GCCCTATACTATACAAACTCTGCCCTATATCTCACGATACAGGGCGATAT
GATCGATGTACTCGTAACACCATAACATCCTCATATACAGGGCATTTTGT
TGAGCGTGTGGCGGACAAGCGAATGGCCTCTTCTTCATTCACATCATCAT
CGGCGAATTCCAGCCCTCCCGAGTCAAGTCCATGGAACCTTACCACAATC
GGGAAGGGCGACTCAAGGAGGCTGCAGGACAACCTTGTGGCGACCAATCG
CGGCGGCCTCGAGTGCCAGGGCTGCGGCCGCGTGTTTTTGCGGTATGAGT
TGGATTGGGCGAACAAGAAGGGCGTCAACACAACGGCATGCGGCGTGCTG
ACTGGCCACTCTCAGAGCAAGCAGCACAAGGCGGAGAAGCCCGAGGAGGT
CCACATCATCACCTCCTTCTTCGGTGCTATCATCAGCCCCAGTCATCATT
CATCTTGCAGCTGGAGACCCCGGCAGCGCCAGCGGCGGCAAGTGGCGGGA
GAGCATCAGCAAGGGCAGGCGGATCGGTGATTGAATCAGTGGACGAGGAC
AATGACGATATCGCGGCCGCGTACATCAAGAGCTTCGCCTCTGTTTCCCA
AGACGGTAGGCGCTCCATTGCTCAGGCGCTGACCCCGACAGTACCGCGAC
GCGTGGGCAGAGGATGGGACAGCTGCCGTTCGTGAGGGAGGAGTTGTTCC
GAGCGGAGGAGACGACGGTGCATATGCGGGCGATCGCGTAGGTGGCGGGT
GGAGAGGAGGGTGTGGTGGAGTTAGAGCGCGGGCATTACACTTCCAAGCA
GGCCTTTCTCTTCAAGGGTGGTCACTTCATGAGCCTGCTCAAGCCCGAGA
TGGTGGTTATTGAGGGCGAAAACAGCACGTAAGCAATCATGCAGATCCCC
CTTGACCACCTGTAGGAGCGGCTCGGCCTCTTAGGGGACGAGGTACGGCT
AGTTGCTGGTGAGGGGTTTAGAAAGCACTTGGAAATCCCGCTTGTTCCCT
AAGCGTCAGGGAAGGAGGCCCGGGGGGGCGAGGTGGGGACCGAGATCGTG
TCCTGCAAACCATGCCGCGGGTCGCTCGACCTGTCGGAGATGACGCAGAA
GAACATGCGCCACCACATCGCTGGGCATGCTTTCCTTTCGGACGTGCCAA
TGAGCATCTGCGGCTTCTGCGGTGTGGGTATAGCGGAAATGGGCTGCAGT
CTGGTGGTGAAACTGAACTAGGTGGAATCCACCTGCTCACTCAAGCCCGC
CAATTTCGAACACGGCCAGCACGAAGGGACAAGAAAGCAAACGCTGGGGG
ATCGACTGAAGTTTCATACGGACGTGGAAGCTGCTACCTCTGCGGCTCTA
CGGCGGAGCAAGCCCAAGGCCACTGTGCCGAACATCCCTGCCTCGGAGAG
TCGATCTTGAAGTACAACGTCATCCCCCACCTGCTCCAGAACGATCATAC
CCTCCCTGTGGGGCCAGGAATGGCGGCGGCGCGGGCGGCCTGTGCTGCTG
GTGTTGCACAATTTCATTTCTTTGGAAAAGCGGGATGGGAAACCCTATGA
TTTGTCCTCCCCTCCTCCCCCCCCGCTTGGCACGCCAACGAGGATCGATC
TGCTTTGAGATTTATTGAGGAGGGCGGAAGGTATAGGATTCCTTGGAGAC
ACATCTATATAGACATTGAAAAGAGGGTGGACATTCACTGCTGTCGCTGC
GTCTTCCAAGACTGACTTGGTTTCAAGATGGATCTCTTCCGACGGGAATT
CTGCTTGGTGGGCAGTGGCAAGTTGGCCGCGGAGGAGGGCGGTTGAATGG
AGGGTGGGCGTGCCAAGCGAGCTGAGCAGAGGAGAGGAGATGGGTATCGC
GTTCCCTGGCTCGGAGGCTGGTGAAAAGGGCGAGGAGGGTACTGGCATTT
GCGGTGCAGGAGATGGGAATGTCCTGTACAGTGGCCTGAGGAAGGGGTCG
GCGCAGCGTCAGCGGTGGCAGTGGTGGAGGTGGAAGATGATAGAGAGGAA
AAAGAAGGGGAGAAAGATGAGGGAGAGGACGAGGGGGAGAGAGGGGCAGG
TGCTCCGCGGGGGAAGAGGCTGTCGGATGCGGGGAGGGCGTGTCCGGCCA
CCAAGCGGCGTTAGCAAAACTTAAGTTGGACAAAGCAAACGATGGAGTAA
AAATTAAAAAATCAAAGTTATAGCACC
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protein sequence of NO04G01140.1

>NO04G01140.1-protein ID=NO04G01140.1-protein|Name=NO04G01140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=210bp
MPLLDHRKARTNIKGRNESRILGYWIYTILYKLCPILYKLCPISHDTGRY
DRCTRNTITSSYTGHFVERVADKRMASSSFTSSSANSSPPESSPWNLTTI
GKGDSRRLQDNLVATNRGGLECQGCGRVFLRYELDWANKKGVNTTACGVL
TGHSQSKQHKAEKPEEVHIITSFFGAIISPSHHSSCSWRPRQRQRRQVAG
EHQQGQADR*
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mRNA from alignment at chr4:362265..364591+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G01140.1 ID=NO04G01140.1|Name=NO04G01140.1|organism=Nannochloropsis oceanica|type=mRNA|length=2327bp|location=Sequence derived from alignment at chr4:362265..364591+ (Nannochloropsis oceanica)
GGTGTGAGTGTGGGTGTTGTATCCATAAGTCGGGTGATAAGAGAGAGGAA
ATGCCATTGCTGGATCATCGAAAGGCACGAACCAACATCAAGGGCCGGAA
TGAATCGCGGATACTCGGATACTGGATATATACTATACTATACAAACTCT
GCCCTATACTATACAAACTCTGCCCTATATCTCACGATACAGGGCGATAT
GATCGATGTACTCGTAACACCATAACATCCTCATATACAGGGCATTTTGT
TGAGCGTGTGGCGGACAAGCGAATGGCCTCTTCTTCATTCACATCATCAT
CGGCGAATTCCAGCCCTCCCGAGTCAAGTCCATGGAACCTTACCACAATC
GGGAAGGGCGACTCAAGGAGGCTGCAGGACAACCTTGTGGCGACCAATCG
CGGCGGCCTCGAGTGCCAGGGCTGCGGCCGCGTGTTTTTGCGGTATGAGT
TGGATTGGGCGAACAAGAAGGGCGTCAACACAACGGCATGCGGCGTGCTG
ACTGGCCACTCTCAGAGCAAGCAGCACAAGGCGGAGAAGCCCGAGGAGGT
CCACATCATCACCTCCTTCTTCGGTGCTATCATCAGCCCCAGTCATCATT
CATCTTGCAGCTGGAGACCCCGGCAGCGCCAGCGGCGGCAAGTGGCGGGA
GAGCATCAGCAAGGGCAGGCGGATCGGTGATTGAATCAGTGGACGAGGAC
AATGACGATATCGCGGCCGCGTACATCAAGAGCTTCGCCTCTGTTTCCCA
AGACGGTAGGCGCTCCATTGCTCAGGCGCTGACCCCGACAGTACCGCGAC
GCGTGGGCAGAGGATGGGACAGCTGCCGTTCGTGAGGGAGGAGTTGTTCC
GAGCGGAGGAGACGACGGTGCATATGCGGGCGATCGCGTAGGTGGCGGGT
GGAGAGGAGGGTGTGGTGGAGTTAGAGCGCGGGCATTACACTTCCAAGCA
GGCCTTTCTCTTCAAGGGTGGTCACTTCATGAGCCTGCTCAAGCCCGAGA
TGGTGGTTATTGAGGGCGAAAACAGCACGTAAGCAATCATGCAGATCCCC
CTTGACCACCTGTAGGAGCGGCTCGGCCTCTTAGGGGACGAGGTACGGCT
AGTTGCTGGTGAGGGGTTTAGAAAGCACTTGGAAATCCCGCTTGTTCCCT
AAGCGTCAGGGAAGGAGGCCCGGGGGGGCGAGGTGGGGACCGAGATCGTG
TCCTGCAAACCATGCCGCGGGTCGCTCGACCTGTCGGAGATGACGCAGAA
GAACATGCGCCACCACATCGCTGGGCATGCTTTCCTTTCGGACGTGCCAA
TGAGCATCTGCGGCTTCTGCGGTGTGGGTATAGCGGAAATGGGCTGCAGT
CTGGTGGTGAAACTGAACTAGGTGGAATCCACCTGCTCACTCAAGCCCGC
CAATTTCGAACACGGCCAGCACGAAGGGACAAGAAAGCAAACGCTGGGGG
ATCGACTGAAGTTTCATACGGACGTGGAAGCTGCTACCTCTGCGGCTCTA
CGGCGGAGCAAGCCCAAGGCCACTGTGCCGAACATCCCTGCCTCGGAGAG
TCGATCTTGAAGTACAACGTCATCCCCCACCTGCTCCAGAACGATCATAC
CCTCCCTGTGGGGCCAGGAATGGCGGCGGCGCGGGCGGCCTGTGCTGCTG
GTGTTGCACAATTTCATTTCTTTGGAAAAGCGGGATGGGAAACCCTATGA
TTTGTCCTCCCCTCCTCCCCCCCCGCTTGGCACGCCAACGAGGATCGATC
TGCTTTGAGATTTATTGAGGAGGGCGGAAGGTATAGGATTCCTTGGAGAC
ACATCTATATAGACATTGAAAAGAGGGTGGACATTCACTGCTGTCGCTGC
GTCTTCCAAGACTGACTTGGTTTCAAGATGGATCTCTTCCGACGGGAATT
CTGCTTGGTGGGCAGTGGCAAGTTGGCCGCGGAGGAGGGCGGTTGAATGG
AGGGTGGGCGTGCCAAGCGAGCTGAGCAGAGGAGAGGAGATGGGTATCGC
GTTCCCTGGCTCGGAGGCTGGTGAAAAGGGCGAGGAGGGTACTGGCATTT
GCGGTGCAGGAGATGGGAATGTCCTGTACAGTGGCCTGAGGAAGGGGTCG
GCGCAGCGTCAGCGGTGGCAGTGGTGGAGGTGGAAGATGATAGAGAGGAA
AAAGAAGGGGAGAAAGATGAGGGAGAGGACGAGGGGGAGAGAGGGGCAGG
TGCTCCGCGGGGGAAGAGGCTGTCGGATGCGGGGAGGGCGTGTCCGGCCA
CCAAGCGGCGTTAGCAAAACTTAAGTTGGACAAAGCAAACGATGGAGTAA
AAATTAAAAAATCAAAGTTATAGCACC
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Coding sequence (CDS) from alignment at chr4:362265..364591+

>NO04G01140.1 ID=NO04G01140.1|Name=NO04G01140.1|organism=Nannochloropsis oceanica|type=CDS|length=630bp|location=Sequence derived from alignment at chr4:362265..364591+ (Nannochloropsis oceanica)
ATGCCATTGCTGGATCATCGAAAGGCACGAACCAACATCAAGGGCCGGAA
TGAATCGCGGATACTCGGATACTGGATATATACTATACTATACAAACTCT
GCCCTATACTATACAAACTCTGCCCTATATCTCACGATACAGGGCGATAT
GATCGATGTACTCGTAACACCATAACATCCTCATATACAGGGCATTTTGT
TGAGCGTGTGGCGGACAAGCGAATGGCCTCTTCTTCATTCACATCATCAT
CGGCGAATTCCAGCCCTCCCGAGTCAAGTCCATGGAACCTTACCACAATC
GGGAAGGGCGACTCAAGGAGGCTGCAGGACAACCTTGTGGCGACCAATCG
CGGCGGCCTCGAGTGCCAGGGCTGCGGCCGCGTGTTTTTGCGGTATGAGT
TGGATTGGGCGAACAAGAAGGGCGTCAACACAACGGCATGCGGCGTGCTG
ACTGGCCACTCTCAGAGCAAGCAGCACAAGGCGGAGAAGCCCGAGGAGGT
CCACATCATCACCTCCTTCTTCGGTGCTATCATCAGCCCCAGTCATCATT
CATCTTGCAGCTGGAGACCCCGGCAGCGCCAGCGGCGGCAAGTGGCGGGA
GAGCATCAGCAAGGGCAGGCGGATCGGTGA
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Synonyms
Publications