NO04G00870.1, NO04G00870.1 (mRNA) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of NO04G00870.1 vs.
Match: XP_005854644.1 (pleckstriny domain-containing expressed, partial [Nannochloropsis gaditana CCMP526]; EKU21716.1 pleckstriny domain-containing expressed, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 324.7 bits (831), Expect = 4.100e-85 Identity = 216/394 (54.82%), Postives = 259/394 (65.74%), Query Frame = 0 Query: 2 GRRKGGR---EEEEEDEKVTALVIREQLSSLRDLKPAFHKTWGNATTEWKVRGETYMSDGIKVGGKAAQPLCELVHMELLDVESAGLSPRADHVTGLFQGLDGVYTRCQLLASRPPPFLLILNFQVPGNPPCSMMCYFALSGAARKGVERAQRRVRRRRARE--AAAVEAAAEQQRREGDEGGGLQGRAEAKGFRADWEEMHAAVTVAAEGQVVSVEGEKGEEEKGEEDEEEDEEEEEEVEIDEERMRTKQLEKKFLMLLAEFLEGSDAERNTRFKLIPSMVEGPRMISFAVGNK---PVLLGKKLTQRYWSGPGYLEVGIDIGSSIMASRTLGLVRDYSKNIVVELAVLIQGEEERELPEKVLGSLRCSRLDWGLAESLKERLEAARAMAAPT 388 GRR R EE+ ED +VT LVI+EQLSSLR+L PAFH +WG+ATTEWKVRG TYM+DG+KVGG+AA+PLCELVHMEL +VESAGL PRADHVT LFQ DGVY+RCQLLAS+PPPFL+ILNFQVPGNPPCSMMCYFAL GA R+G+E+A+ RVRRR+ARE AA E E+Q E +E AE +G E++ +G+ V EK EE+K E E ++E E+ R K L+ +EG L+ MV ++ +GNK G + +GIDIGSS MASRTLG VRD SKN+VVELAVL+QGE+E+ELPEKVLGSLR SRLDWGLAE LK RLEAA P+ Sbjct: 10 GRRVEDRWSGEEDVEDREVTTLVIKEQLSSLRELNPAFHASWGDATTEWKVRGRTYMADGVKVGGRAAEPLCELVHMELFEVESAGLVPRADHVTALFQRKDGVYSRCQLLASQPPPFLIILNFQVPGNPPCSMMCYFALCGARRQGLEKARERVRRRKAREGAVAAAEIIGEEQEEEEEE-----EEAEEEGM----EDL-------GDGECVQ---EKREEKKFLRLLAEFLEGDDE----EKNRRFK--------LIPSIIEGP--------ALVRLMVGNKPVL---LGNKLTQRYWTGPGYLE----------IGIDIGSSAMASRTLGFVRDGSKNVVVELAVLVQGEDEKELPEKVLGSLRSSRLDWGLAEGLKGRLEAAVIARTPS 351 The following BLAST results are available for this feature:
BLAST of NO04G00870.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1) Total hits: 1
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO04G00870.1 ID=NO04G00870.1|Name=NO04G00870.1|organism=Nannochloropsis oceanica|type=mRNA|length=1221bpback to top protein sequence of NO04G00870.1 >NO04G00870.1-protein ID=NO04G00870.1-protein|Name=NO04G00870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=407bpback to top mRNA from alignment at chr4:287929..289149+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>NO04G00870.1 ID=NO04G00870.1|Name=NO04G00870.1|organism=Nannochloropsis oceanica|type=mRNA|length=1221bp|location=Sequence derived from alignment at chr4:287929..289149+ (Nannochloropsis oceanica)back to top Coding sequence (CDS) from alignment at chr4:287929..289149+ >NO04G00870.1 ID=NO04G00870.1|Name=NO04G00870.1|organism=Nannochloropsis oceanica|type=CDS|length=1221bp|location=Sequence derived from alignment at chr4:287929..289149+ (Nannochloropsis oceanica)back to top Synonyms
Publications
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