NO04G00540, NO04G00540 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO04G00540
Unique Name	NO04G00540
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	6225
Alignment location	chr4:195698..201922 +

Link to JBrowse

Properties


Property Name	Value
Description	Transmembrane protein

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr4	genome	chr4:195698..201922 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
PRJNA769958	2024-08-13
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0022857	transmembrane transporter activity
GO:0005215	transporter activity

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport
GO:0006810	transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane
GO:0016020	membrane

Vocabulary: **INTERPRO**
Term	Definition
IPR002293	AA/rel_permease1

Homology

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BLAST of NO04G00540 vs. NCBI_GenBank
Match: EWM28484.1 (transmembrane protein [Nannochloropsis gaditana])

HSP 1 Score: 591.3 bits (1523), Expect = 2.300e-165
Identity = 314/389 (80.72%), Postives = 342/389 (87.92%), Query Frame = 0

Query:    7 APLQPGAT--SP-TEAVPLLSRTESIESWGLSNPHELLVSASSHQQHSHELHRPPTFAPVGWRDRLSSKSNIETWAFPGWGRYNLQMTVTDEELAKIEADMDHRQPPKLNQWEATAICGNDIMASCLYVVGLVTVSAGKMAPVALLMVSCVLYLIRYLYAEAITALPMNGGSFNVLLNSTSKGIASFAATLALVSYIATGVVSATSAIDYLDKVVRVPHPLLAILGLLFLFAMLVLMGIKESAGVAQIILVVHIFTLTLLCVCSAVYVICDPSTLRENLNTPFPDVQLGGIIRSGSFATALFFGYSSAILGVSGFESSSQFVQSQAPGVFLKTLRNMWVGAIVFNPMISFLALGVLPLARIVEDESVVLAKMAKHVGTWVVGRGGGMVE 393
            +P + G T  SP TEA PLLSR +SIESWGLSNP +  +  + HQ   H+L  P T    GWRDRLS+KSNIETW FPGWGRYNLQMTVTDEELA+IEADMD +QPPKLNQWEATAICGNDIMASC YVVGLVT+SAGKMAP+ALL+VSCVLYLIR+LYAEAITALPMNGGSFNVLLNSTSKGIAS AATLALVSYIATGVVSATSA+DYL KVV VP+PLLAILGLLFLFA+LV +GIKESAGVAQ+I  +HIFTLTLLC CS VYV+ DPSTLREN   P+PDV+LGG+IRSGSFATA+FFGY+SAILGVSGFESSSQFVQSQAPGVFLKTLRNMWVGA VFNP ISFL+LGVLPLARIVEDESVVLAKMAKHVG W+ G  G  VE
Sbjct:    3 SPTKQGETDRSPATEAEPLLSRVDSIESWGLSNPGD-AIPTTRHQPMRHQLSDPITGPSKGWRDRLSNKSNIETWTFPGWGRYNLQMTVTDEELAEIEADMDQQQPPKLNQWEATAICGNDIMASCFYVVGLVTMSAGKMAPLALLLVSCVLYLIRFLYAEAITALPMNGGSFNVLLNSTSKGIASSAATLALVSYIATGVVSATSAVDYLKKVVSVPNPLLAILGLLFLFAVLVFLGIKESAGVAQVIFWIHIFTLTLLCACSMVYVVADPSTLRENFRAPYPDVELGGVIRSGSFATAIFFGYTSAILGVSGFESSSQFVQSQAPGVFLKTLRNMWVGAFVFNPTISFLSLGVLPLARIVEDESVVLAKMAKHVGDWMCGGAGAGVE 390

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BLAST of NO04G00540 vs. NCBI_GenBank
Match: XP_005853846.1 (amino acid-polyamine-organocation family, partial [Nannochloropsis gaditana CCMP526] >EKU22515.1 amino acid-polyamine-organocation family, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 579.7 bits (1493), Expect = 6.800e-162
Identity = 308/377 (81.70%), Postives = 335/377 (88.86%), Query Frame = 0

Query:    7 APLQPGAT--SP-TEAVPLLSRTESIESWGLSNPHELLVSASSHQQHSHELHRPPTFAPVGWRDRLSSKSNIETWAFPGWGRYNLQMTVTDEELAKIEADMDHRQPPKLNQWEATAICGNDIMASCLYVVGLVTVSAGKMAPVALLMVSCVLYLIRYLYAEAITALPMNGGSFNVLLNSTSKGIASFAATLALVSYIATGVVSATSAIDYLDKVVRVPHPLLAILGLLFLFAMLVLMGIKESAGVAQIILVVHIFTLTLLCVCSAVYVICDPSTLRENLNTPFPDVQLGGIIRSGSFATALFFGYSSAILGVSGFESSSQFVQSQAPGVFLKTLRNMWVGAIVFNPMISFLALGVLPLARIVEDESVVLAKMAKHVG 381
            +P + G T  SP TEA PLLSR +SIESWGLSNP +  +  + HQ   H+L  P T    GWRDRLS+KSNIETW FPGWGRYNLQMTVTDEELA+IEADMD +QPPKLNQWEATAICGNDIMASC YVVGLVT+SAGKMAP+ALL+VSCVLYLIR+LYAEAITALPMNGGSFNVLLNSTSKGIAS AATLALVSYIATGVVSATSA+DYL KVV VP+PLLAILGLLFLFA+LV +GIKESAGVAQ+I  +HI TLTLLC CS VYV+ DPSTLREN   P+PDV+LGG+IRSGSFATA+FFGY+SAILGVSGFESSSQFVQSQAPGVFLKTLRNMWVGA VFNP ISFL+LGVLPLARIVEDESVVLAKMAKHVG
Sbjct:    3 SPTKQGETDRSPATEAEPLLSRVDSIESWGLSNPSD-AIPTTRHQPMRHQLSDPITGPSKGWRDRLSNKSNIETWTFPGWGRYNLQMTVTDEELAEIEADMDQQQPPKLNQWEATAICGNDIMASCFYVVGLVTMSAGKMAPLALLLVSCVLYLIRFLYAEAITALPMNGGSFNVLLNSTSKGIASSAATLALVSYIATGVVSATSAVDYLKKVVSVPNPLLAILGLLFLFAVLVFLGIKESAGVAQVIFWIHILTLTLLCACSMVYVVADPSTLRENFRAPYPDVELGGVIRSGSFATAIFFGYTSAILGVSGFESSSQFVQSQAPGVFLKTLRNMWVGAFVFNPTISFLSLGVLPLARIVEDESVVLAKMAKHVG 378

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BLAST of NO04G00540 vs. NCBI_GenBank
Match: OQR90523.1 (hypothetical protein THRCLA_09308 [Thraustotheca clavata])

HSP 1 Score: 316.2 bits (809), Expect = 1.400e-82
Identity = 175/312 (56.09%), Postives = 229/312 (73.40%), Query Frame = 0

Query:   71 SKSNIETWAFPGWGRYNLQMTVTDEELAKIEADMDHRQPPKLNQWEATAICGNDIMASCLYVVGLVTVSAGKMAPVALLMVSCVLYLIRYLYAEAITALPMNGGSFNVLLNSTSKGIASFAATLALVSYIATGVVSATSAIDYLDKVVRVPHPLLAILGLLFLFAMLVLMGIKESAGVAQIILVVHIFTLTLLCVCSAVYVICDP-STLRENL-NTPFPDVQLGGIIRSGSFATALFFGYSSAILGVSGFESSSQFVQSQAPGVFLKTLRNMWVGAIVFNPMISFLALGVLPLARIVEDESVVLAKMAKHVG 381
            S SN++ W FPGWG+Y +   V  EEL +IE  +  R+  KL++W ATAICGNDI++SCLYV GLVT  AGK+AP+ L++V+ +LYL R++Y E + A+PMNGGS+NVLLN+TSK +AS AA+LA++SYIATGVVS TSA  YL   V     + A +GLLF FA+L  MGI ESA VA +I ++H  TL +LCV S +++  +  S L ENL  T FP+V + G   SG   TALFFG S+A+LG+SGFESSSQFVQ QAPGVF KTL+NMW G  VFNP++SFL+LGV+P++ I   ++ VL++MA  VG
Sbjct:   27 SVSNVKPWDFPGWGKY-ISTNVKKEELMEIEDTLKRREHRKLSEWPATAICGNDILSSCLYVSGLVTAKAGKLAPLDLVLVAGILYLYRFIYGEVVNAIPMNGGSYNVLLNTTSKRVASIAASLAILSYIATGVVSGTSACTYLSATVPTLSVVPASIGLLFFFAVLTCMGISESAMVALVIFIIHTLTLVVLCVMSVLFMAKNNFSILYENLFQTDFPEVNVAGTWVSGDVFTALFFGTSTAMLGISGFESSSQFVQEQAPGVFPKTLKNMWWGVAVFNPLLSFLSLGVMPMSNINMFKNTVLSQMALVVG 337

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BLAST of NO04G00540 vs. NCBI_GenBank
Match: XP_009519035.1 (hypothetical protein PHYSODRAFT_485543 [Phytophthora sojae] >EGZ23747.1 hypothetical protein PHYSODRAFT_485543 [Phytophthora sojae])

HSP 1 Score: 312.0 bits (798), Expect = 2.600e-81
Identity = 180/311 (57.88%), Postives = 228/311 (73.31%), Query Frame = 0

Query:   75 IETWAFPGWGRYNLQMTVTDEELAKIEA--DMDHRQPPKLNQWEATAICGNDIMASCLYVVGLVTVSAGKMAPVALLMVSCVLYLIRYLYAEAITALPMNGGSFNVLLNSTSKGIASFAATLALVSYIATGVVSATSAIDYLDKVVRVPHPLLAILGLLFLFAMLVLMGIKESAGVAQIILVVHIFTLTLLCVCSAVYVICDP-STLRENLNTPFPDVQLGGIIRSGSFATALFFGYSSAILGVSGFESSSQFVQSQAPGVFLKTLRNMWVGAIVFNPMISFLALGVLPL---ARIVEDESVVLAKMAKHV 380
            ++ W FPGWG  NL    ++ EL +I A   MDH   PKL++W ATAICGNDI++SCLYV GLV   AGK+APVAL +V+ +LYL R++Y E + A+P+NGGS+NVLLN+TSK +A+ AA+LA++SYIATGVVS TSA +YL   V     + A +GLLF+FAML L+GI ESA VA +I + H  TLT+LCV SAVYV  D   TL  N +T FPD+ L G I SG+F TA+FFG S+A+LG+SGFE+SSQFV+ QA GVF KTLRNMW G  +FNPMIS L+LGVLPL     IV+ ++ VLA+M   V
Sbjct:   43 LKGWEFPGWGD-NLTAVASESELNEIRAHQSMDH---PKLSEWLATAICGNDILSSCLYVSGLVASKAGKLAPVALAIVAGILYLYRFIYGEVLNAVPLNGGSYNVLLNTTSKRVAAMAASLAILSYIATGVVSGTSACNYLASHVPSLEIVPATVGLLFIFAMLSLIGITESAVVALVIFITHATTLTVLCVLSAVYVWNDGFQTLHANFSTDFPDINLAGDIMSGNFLTAIFFGTSTAMLGISGFETSSQFVEEQADGVFPKTLRNMWWGVAIFNPMISLLSLGVLPLDGPGGIVDKKNTVLAEMGLKV 349

[Close]

BLAST of NO04G00540 vs. NCBI_GenBank
Match: POM62211.1 (Transmembrane protein [Phytophthora palmivora var. palmivora])

HSP 1 Score: 310.1 bits (793), Expect = 1.000e-80
Identity = 176/311 (56.59%), Postives = 229/311 (73.63%), Query Frame = 0

Query:   75 IETWAFPGWGRYNLQMTVTDEELAKIEA--DMDHRQPPKLNQWEATAICGNDIMASCLYVVGLVTVSAGKMAPVALLMVSCVLYLIRYLYAEAITALPMNGGSFNVLLNSTSKGIASFAATLALVSYIATGVVSATSAIDYLDKVVRVPHPLLAILGLLFLFAMLVLMGIKESAGVAQIILVVHIFTLTLLCVCSAVYVICDP-STLRENLNTPFPDVQLGGIIRSGSFATALFFGYSSAILGVSGFESSSQFVQSQAPGVFLKTLRNMWVGAIVFNPMISFLALGVLPL---ARIVEDESVVLAKMAKHV 380
            ++ W FPGWG  N     +D EL +I+    +DH   PKL++W ATAICGNDI++SCLYV GLV   AGK+APVAL +V+ +LYL R++Y E + A+P+NGGS+NVLLN+TSK +A+ AA+LA++SYIATGVVS TSA +YL   V     + A +GLLF+FA+L L+GI ESA VA +I +VH  TL +LCV SA+YV+ D   TLR N +T FPD+ L G I SG+F TA+FFG S+A+LG+SGFE+SSQFV+ QA GVF KTLRNMW G  +FNPMI+ L+LGVLPL     IV+ ++ VLA+M   V
Sbjct:   11 LKGWEFPGWGD-NTSTVASDSELNEIQTHLSVDH---PKLSEWLATAICGNDILSSCLYVSGLVASKAGKLAPVALAIVAGILYLYRFIYGEVLNAVPLNGGSYNVLLNTTSKRVAAMAASLAILSYIATGVVSGTSACNYLASHVPSLEIVPATVGLLFIFAILSLIGITESAVVALVIFIVHATTLAVLCVLSAMYVVKDDFQTLRANFDTDFPDINLAGDIMSGNFLTAIFFGTSTAMLGISGFETSSQFVEEQADGVFPKTLRNMWWGVAIFNPMIALLSLGVLPLNGPGGIVDKKNTVLAEMGLKV 317

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BLAST of NO04G00540 vs. NCBI_GenBank
Match: XP_008620353.1 (hypothetical protein SDRG_15944 [Saprolegnia diclina VS20] >EQC26208.1 hypothetical protein SDRG_15944 [Saprolegnia diclina VS20])

HSP 1 Score: 309.3 bits (791), Expect = 1.700e-80
Identity = 172/310 (55.48%), Postives = 225/310 (72.58%), Query Frame = 0

Query:   73 SNIETWAFPGWGRYNLQMTVTDEELAKIEADMDHRQPPKLNQWEATAICGNDIMASCLYVVGLVTVSAGKMAPVALLMVSCVLYLIRYLYAEAITALPMNGGSFNVLLNSTSKGIASFAATLALVSYIATGVVSATSAIDYLDKVVRVPHPLLAILGLLFLFAMLVLMGIKESAGVAQIILVVHIFTLTLLCVCSAVYVICDP-STLRENL-NTPFPDVQLGGIIRSGSFATALFFGYSSAILGVSGFESSSQFVQSQAPGVFLKTLRNMWVGAIVFNPMISFLALGVLPLARIVEDESVVLAKMAKHVG 381
            +N++ W FPGWG+Y +   V  EEL  I+A++  R+ PKL++W ATAICGNDI++SCLYV GLVT  AGK+APV+L +V+ +LYL R++Y E + A+PMNGGS+NVLLN+TSK +AS AA+LA++SYIATGVVS TSA  YL         + + +GLLF FA+L  MGI ESA  A  I ++H  TL  LCV S +Y+  D  + L +NL  T FPDV + G   +G   TALFFG S+A+LG+SGFESSSQFVQ QAPGVF KTL+NMW G  +FNP+IS L+LGV+P+A I   ++ VL++MA  VG
Sbjct:   36 ANLKPWDFPGWGKY-INTEVKPEELRAIDAELKKREHPKLSEWPATAICGNDILSSCLYVSGLVTAKAGKLAPVSLALVAGILYLYRFIYGEVVNAIPMNGGSYNVLLNTTSKRVASIAASLAILSYIATGVVSGTSACTYLSSTFPALPVVPSSIGLLFFFAVLTSMGISESAIFALGIFILHTITLVTLCVMSMLYMSRDNFAILYDNLFETSFPDVNVAGTWVTGDVFTALFFGTSTAMLGISGFESSSQFVQEQAPGVFPKTLKNMWWGVAIFNPLISLLSLGVMPMANINMVKNTVLSQMALVVG 344

[Close]

BLAST of NO04G00540 vs. NCBI_GenBank
Match: CBJ32260.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 308.1 bits (788), Expect = 3.800e-80
Identity = 175/324 (54.01%), Postives = 226/324 (69.75%), Query Frame = 0

Query:   63 VGWRDRLSSKSNIETWAFPGWGRYNLQMTVTDEE-LAKIEADMDHRQPPKLNQWEATAICGNDIMASCLYVVGLVTVSAGKMAPVALLMVSCVLYLIRYLYAEAITALPMNGGSFNVLLNSTSKGIASFAATLALVSYIATGVVSATSAIDYLDKVVRVPHPLLAILGLLFLFAMLVLMGIKESAGVAQIILVVHIFTLTLLCVCSAVYVICDPSTLRENLNTPFPDVQLGGIIRSGSFATALFFGYSSAILGVSGFESSSQFVQSQAPGVFLKTLRNMWVGAIVFNPMISFLALGVLPLARIVEDESVVLAKMAKHVGTWVVG 386
            +G   R+SS+  +E+W FPGWG +    T+     LA      D+    KL +W ATAI GNDI++S LYV GLVT  AG ++PV LLMV+ +LYL R++Y EAI+ALPMNGG++NVL+N+TSK +ASFAA LA++SYIATGVVSA +A+ YL  ++     +   +GLLF FA L+ MGI ESAGVA  + VVH+FTLT +CV SA Y   + + L+ENL   FP V +GG +  G++ TA+ FG SSA+LGVSGFESSSQFV+ QA GVF+KTLRNM  G  VFNP I  L+L VLP+  I+E +  +LA MAK VG W  G
Sbjct:  130 LGLPRRVSSRVRLESWEFPGWGSH---FTMNPPPGLALSNPSKDNGGHEKLGEWYATAISGNDILSSVLYVTGLVTGFAGWLSPVCLLMVAGILYLYRFIYGEAISALPMNGGAYNVLINTTSKPVASFAACLAVISYIATGVVSAATAVSYLQTLIPAAGLMTCTIGLLFFFACLMTMGISESAGVALGMFVVHVFTLTAVCVLSACYAFYNVTILKENLQQDFPAVTVGGTVVEGTWVTAILFGVSSAMLGVSGFESSSQFVEEQAKGVFVKTLRNMQWGVAVFNPAICLLSLCVLPMEEIIEYKHSMLAIMAKRVGYWAGG 450

[Close]

BLAST of NO04G00540 vs. NCBI_GenBank
Match: OWZ24766.1 (hypothetical protein PHMEG_000122 [Phytophthora megakarya])

HSP 1 Score: 307.8 bits (787), Expect = 5.000e-80
Identity = 178/329 (54.10%), Postives = 233/329 (70.82%), Query Frame = 0

Query:   57 PPTFAPVGWRDRLSSKSNIETWAFPGWGRYNLQMTVTDEELAKIEADMDHRQPP--KLNQWEATAICGNDIMASCLYVVGLVTVSAGKMAPVALLMVSCVLYLIRYLYAEAITALPMNGGSFNVLLNSTSKGIASFAATLALVSYIATGVVSATSAIDYLDKVVRVPHPLLAILGLLFLFAMLVLMGIKESAGVAQIILVVHIFTLTLLCVCSAVYVICDP-STLRENLNTPFPDVQLGGIIRSGSFATALFFGYSSAILGVSGFESSSQFVQSQAPGVFLKTLRNMWVGAIVFNPMISFLALGVLPL---ARIVEDESVVLAKMAKHV 380
            PP  +P+       + + ++ W FPGWG  N     +D EL +I+    H   P  KL++W ATAICGNDI++SCLYV GLV   AGK+APVAL +V+ +LYL R++Y E + A+P+NGGS+NVLLN+TSK +A+ AA+LA++SYIATGVVS TSA +YL   V     + A +GLLF+FA+L L+GI ESA VA +I + H  TL +LCV SAVYV+ D   TLR N +T FPD+ L G I SG+F TA+FFG S+A+LG+SGFE+SSQFV+ QA GVF KTLRNMW G  +FNPMI+ L+LGVLPL     IV+ ++ VLA+M   V
Sbjct:    8 PPPLSPLMLHVN-KNTNTLKGWEFPGWGD-NASTVASDSELNEIQT---HLSVPHTKLSEWLATAICGNDILSSCLYVSGLVASKAGKLAPVALAIVAGILYLYRFIYGEVLNAVPLNGGSYNVLLNTTSKRVAAMAASLAILSYIATGVVSGTSACNYLASHVPSLEIVPATIGLLFIFALLSLIGITESAVVALVIFIAHATTLVVLCVLSAVYVVKDDFQTLRANFDTDFPDINLAGDIMSGNFLTAIFFGTSTAMLGISGFETSSQFVEEQADGVFPKTLRNMWWGVAIFNPMIALLSLGVLPLNGPGGIVDKKNTVLAEMGLKV 331

[Close]

BLAST of NO04G00540 vs. NCBI_GenBank
Match: OQR82549.1 (hypothetical protein ACHHYP_15868 [Achlya hypogyna])

HSP 1 Score: 305.4 bits (781), Expect = 2.500e-79
Identity = 172/312 (55.13%), Postives = 225/312 (72.12%), Query Frame = 0

Query:   71 SKSNIETWAFPGWGRYNLQMTVTDEELAKIEADMDHRQPPKLNQWEATAICGNDIMASCLYVVGLVTVSAGKMAPVALLMVSCVLYLIRYLYAEAITALPMNGGSFNVLLNSTSKGIASFAATLALVSYIATGVVSATSAIDYLDKVVRVPHPLLAILGLLFLFAMLVLMGIKESAGVAQIILVVHIFTLTLLCVCSAVYVICDP-STLRENL-NTPFPDVQLGGIIRSGSFATALFFGYSSAILGVSGFESSSQFVQSQAPGVFLKTLRNMWVGAIVFNPMISFLALGVLPLARIVEDESVVLAKMAKHVG 381
            + +N++ W FPGWG+Y +   V  +EL  IE ++  R+ PKL++W ATAICGNDI++SCLYV GLVT  AGK+APV+L +V+ +LYL R++Y E + A+PMNGGS+NVLLN+TSK +AS AA+LA++SYIATGVVS TSA  YL         + + +GLLF FA+L  MGI ESA  A  I ++H  TL  LCV S +++  +  S L +NL +T FPDV + G   SG   TALFFG S+A+LG+SGFESSSQFVQ QA GVF KTL+NMW G  VFNP+IS L+LGV+P+A I   ++ VLA+MA  VG
Sbjct:   38 TNANLKPWDFPGWGKY-ISTEVPADELRLIEDELKKREHPKLSEWPATAICGNDILSSCLYVSGLVTAKAGKLAPVSLALVAGILYLYRFIYGEVVNAIPMNGGSYNVLLNTTSKRVASIAASLAILSYIATGVVSGTSACTYLSSTFPALPVVPSSVGLLFFFAVLTSMGISESAMFALGIFILHTLTLIALCVASIIFMSQNNFSILYDNLFHTDFPDVNVAGSWVSGDIFTALFFGTSTAMLGISGFESSSQFVQEQAAGVFPKTLKNMWWGVAVFNPLISLLSLGVMPMANINMFKNTVLAQMALVVG 348

[Close]

BLAST of NO04G00540 vs. NCBI_GenBank
Match: XP_008892125.1 (hypothetical protein PPTG_02659 [Phytophthora parasitica INRA-310] >ETI49800.1 hypothetical protein F443_06558 [Phytophthora parasitica P1569] >ETK89564.1 hypothetical protein L915_06427 [Phytophthora parasitica] >ETL42965.1 hypothetical protein L916_06373 [Phytophthora parasitica] >ETL96141.1 hypothetical protein L917_06241 [Phytophthora parasitica] >ETM49295.1 hypothetical protein L914_06354 [Phytophthora parasitica] >ETN22906.1 hypothetical protein PPTG_02659 [Phytophthora parasitica INRA-310] >ETO78356.1 hypothetical protein F444_06624 [Phytophthora parasitica P1976] >ETP19437.1 hypothetical protein F441_06563 [Phytophthora parasitica CJ01A1] >ETP47356.1 hypothetical protein F442_06602 [Phytophthora parasitica P10297])

HSP 1 Score: 304.7 bits (779), Expect = 4.200e-79
Identity = 177/329 (53.80%), Postives = 233/329 (70.82%), Query Frame = 0

Query:   57 PPTFAPVGWRDRLSSKSNIETWAFPGWGRYNLQMTVTDEELAKIEADM--DHRQPPKLNQWEATAICGNDIMASCLYVVGLVTVSAGKMAPVALLMVSCVLYLIRYLYAEAITALPMNGGSFNVLLNSTSKGIASFAATLALVSYIATGVVSATSAIDYLDKVVRVPHPLLAILGLLFLFAMLVLMGIKESAGVAQIILVVHIFTLTLLCVCSAVYVICDP-STLRENLNTPFPDVQLGGIIRSGSFATALFFGYSSAILGVSGFESSSQFVQSQAPGVFLKTLRNMWVGAIVFNPMISFLALGVLPL---ARIVEDESVVLAKMAKHV 380
            PP  +P+       + + ++ W FPGWG  N     +D EL +I+A +  DH    KL++W ATAICGNDI++SCLYV GLV   AGK+APVAL +V+ +LYL R++Y E + A+P+NGGS+NVLLN+TSK +A+ AA+LA++SYIATGVVS TSA +YL   V     + A +GLLF+FA+L L+GI ESA VA +I + H  TL +LCV SA+YV+ D   TL  N +T FPD+ L G I SG+F TA+FFG S+A+LG+SGFE+SSQFV+ QA GVF KTLRNMW G  +FNPMI+ L+LGVLPL     IV+  + VLA+M   V
Sbjct:   26 PPPLSPLMLHVNKHTNA-LKGWEFPGWGD-NSSTVASDSELNEIQAHLSTDH---TKLSEWLATAICGNDILSSCLYVSGLVASKAGKLAPVALAIVAGILYLYRFIYGEVLNAVPLNGGSYNVLLNTTSKRVAAMAASLAILSYIATGVVSGTSACNYLASHVPSLEIVPATVGLLFIFAVLSLIGITESAIVALVIFIAHATTLVVLCVLSAIYVVKDDFQTLWANFDTDFPDINLAGDIMSGNFLTAIFFGTSTAMLGISGFETSSQFVEEQADGVFPKTLRNMWWGVAIFNPMIALLSLGVLPLNGPGGIVDKRNTVLAEMGLKV 349

The following BLAST results are available for this feature:

BLAST of NO04G00540 vs. NCBI_GenBank

BLAST of NO04G00540 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM28484.1	2.300e-165	80.72	transmembrane protein [Nannochloropsis gaditana]	[more]
XP_005853846.1	6.800e-162	81.70	amino acid-polyamine-organocation family, partial ...	[more]
OQR90523.1	1.400e-82	56.09	hypothetical protein THRCLA_09308 [Thraustotheca c...	[more]
XP_009519035.1	2.600e-81	57.88	hypothetical protein PHYSODRAFT_485543 [Phytophtho...	[more]
POM62211.1	1.000e-80	56.59	Transmembrane protein [Phytophthora palmivora var....	[more]
XP_008620353.1	1.700e-80	55.48	hypothetical protein SDRG_15944 [Saprolegnia dicli...	[more]
CBJ32260.1	3.800e-80	54.01	conserved unknown protein [Ectocarpus siliculosus]	[more]
OWZ24766.1	5.000e-80	54.10	hypothetical protein PHMEG_000122 [Phytophthora me...	[more]
OQR82549.1	2.500e-79	55.13	hypothetical protein ACHHYP_15868 [Achlya hypogyna...	[more]
XP_008892125.1	4.200e-79	53.80	hypothetical protein PPTG_02659 [Phytophthora para...	[more]

Pages

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL077	nonsL077	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR059	ncniR059	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR105	ngnoR105	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO04G00540.1	NO04G00540.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO04G00540.1	NO04G00540.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO04G00540 ID=NO04G00540|Name=NO04G00540|organism=Nannochloropsis oceanica|type=gene|length=6225bp
CATTGCAGTACATACATTCTTTCACTCTTCTCTATTTTCCATTACTCCAT
CCGGAGGCTCACGCATATCTCCCCACCGTTGCCAGTACCACTTACCATAC
GAAGCAAGCAGCTCTTCCCCCGCCTTGATATTCCGTGTGCTGTACATGAC
GACACACGGTGGTCGCTTGCTCCGTATTCTCCTTTGACACTGGGCTGCGT
CATTCCCCTTTCCTTTCAAGACGCTGTTCGCCTTCTCATCGTAATGGTCA
AATCGCAATAACCTGCCGTAGCGCATATTGTTCTCCAGACGTGCTTGCCC
GCGAGCATCATTGACGTATCGACCCAAGTTCTGCGTCTTGGTCTCATCCC
CTCTTCCCGCACCCGATGCCAAAGCCGTGGCGCCTCCCTCGTAGCCGCTT
GAAAACGACAGCAAGGCCTCCGCATCCAAGGTCAAAGAAGGACCTACTTG
AATGCAGTACCGACCTTGCGCCTTCTCTTTTCGAAGCTCTCCATAATACA
GCACCAAGGGTTTCAGCGCCGGAAGGTCAACTGCAGTAAACAGGCCGTCT
CCCGCCCCGGGTATGAAAGAGGGTTTGACTTCTAGGCAGGGGACAAGGGC
ATCAGTGGCATGTACCAGTGCCGCAACTTCCTCAGCGTCCGTTGCCTGGA
TCCCCGACCGTAGCGTGACCATAGGCTTGTTGTGGGATGGGCCTAGGATG
TACGAAGTATCGTGACGAGTTGCTATGTCGCCGTGAAGTGGTGGTTGTGA
GAAGGAAAGCAAGCTAGCCGTCCTTACGTTCAGATAAAACACGGCATAAA
ACTAATTAGTTATTCCTGGTTTCCTTTGCCTACGCGCAGCCCAGTTGGCC
ACTTGAATAGACACATACACATAAAGACACAAAACGTAGAGCCCCGCACC
GACTGGCGTCCGAGTCGGGCAAATTGGCGTCATGTATGGTTGTTCGAGCT
TCTCTGTAGTTTCCTACAATCCCAAAATTATCGCGTGCAACCAATCCGCA
GACAAATGCAAACACCTGTATTTACACAAGCGTGCCTCCTCTTAGGATTA
AGCACGACGGAAAGCCTTCCAACGATAGATCATTGCATATTCCTCCCTTA
TTTTTGCCGAGTTTTAAATGGCTTTGACAGGGATTTCACCAGTGAAGTCC
TCGGATGGCCCATACAGGGCTAGGAGAAGGAAAAAAAAAGAGGAGGTCAG
AGGGAAGGCAACTTATACAACGTCCGCATCACCTGCCGCGATTGACCATA
CCGGAGCTCGTGGAGACGACTTTCTCCACTGAAATACTCCTAAAAAACCG
CAGGATGTTGCGTGCCGCATTGCCATCTCGAGATACGACGTGTTTACAGG
CTTCATACCAACAAAGTCCGCCGGCAAGTAAAATCCCACCACCCCTCTTT
TCCTCCTTCTCCTTCTCCTCTTCATCCTCCTTCTCCTCCTCGGCTACTGA
TGCTGCTGCTACTGCTGCTTCCCCTCCCGCCAATCCTCTACCTCTCATCC
GTCCTCCCCTCCCTCCCCTCCTTCCCACTCGTGCTCTTACTCCCACACCT
CCTCTCCCTCCTGCTCCTACTCCTACACCTCCTCTCTCTCATGCATTTCG
GTATTGTCTTTTGTCTTTCATTGTACCTCCAGATGCCTTTGATGATACCC
GTGCAAGATGTGGTACAGATACGGGAGAAAGAGCCCTTCCACTGAGGTCT
TATTCTTGACATCCAGGCAGGCAGAGCCCTCCAGTTTTAGAAGCCGTCGT
TCCTCGTTGATGAAGGATCGGACATTTTCCGGGATTGCCATCAGAGGGCC
AGCGCCGCATGCCCCCTCTCCATCCTCCCCCATCCTGCTGCTGCTGGTGC
TCGTGCTCGTGCTCGTGCTCGTGTTCGTGCCATTGTTGCTGTTGCTGTTG
CTGTTGCTGCTGCTGCAGCAGCTGCTGCTGCTGCTGCTGTTGCTATTGCT
ACTGCTGTTGCTGGTGCTATTGCCGTTGCTGTTACTCTTGCTGTCGATGT
TGCCCTTGGCGATCCTCTTACTCTTCCCCTTCCTTCTCTTCCCCTCTGCC
CTCTTCCCCACCCCCCTCCCTCATCCTTCCTCCTCTCTTCCTCTCCCCCC
TCCTCGCCTGATTGTCGTTGTGCCGCCGTTTCCGGGAGACCGCAGGTTTC
TTTCCAGCCGTTCATGAGTCATTGAGCACAGTAAGCCGACACTTCCTGTG
ACGCCAATCCATGATCTTGAAGCCAGAATTGCACAAAATCCCGTTGTCGG
CCAACAAATGAGGTCCATGTCGACGCTGCAAAATTCGTCGAGTAGAACTG
TGCCCCCATAGTGATAACCTTGTAATCACCACTGCTCAAGTGGACGTACG
GATTGAAATTTATCCTGGAAAATATCCTTGACGACTTTGCGGTAAGCCGC
GTTAGATAATTGGTGTGCAACTTCAAGCCTTCAGTGAAGCAGGCGGTTAC
GAACGTTTGGCCCAGCTTCGAAAGGGCGACTTGATTTTCGACTGGACGAT
TGTAGTTGTGTTGGAAGTTGCAATGCAACACCTCATTTACCAGGAGTGAT
GCTCTTACGATGATTTCAGACGTGTTGCGAATCTGTCGCTCCAGGCTTTC
GATGAGCACTACATTAACTGTCGGTTACTAACCAGGCGCCAGTCGTTCGG
GAAGACAACACTTTGAGCATTTCATCTTCAGTCTTCCCTGCGATCTCTTC
CGCTTGGCCCAATCCGGTCGCTTGGTTTTAGCAGTCTCAGTTGACGAGGA
CATTTCTGTATTTTTGGAGGTAAAAAAGGGAGGGTTATTTAGAACGGTGA
AAATCTGGTTAAGAAACTCGATTGCCGTATTCAAAGGATCATGACTCCAT
CTCAATAGACCAAGGCACACAAATGAAGACGATGTCCGCATAAAAGCTCG
TCGCCCCGAGAAAGGCGTGCTGAGATAAAAAGTGGGTTGGATGGGGCTAC
GAATAGTAGGCGCCAATTACTCATCCTGATGGTGAACAGATGTGCAGTGG
GTAGGCAAGGTGCCCCCTTTGGTCTAATGACCCTTCTCTCGAAGGGTGCG
GTGTTGTCCGCGGCACAAGGGCGAAAATAGGGTGTCGCCGCGGTGCTGAT
AGGACAGGGAGAGGATGGTATGAGGCGGGTATGGCCAGGGAAGGAAATGC
TATGCAAGGGAGGTGGCGCCACGCACGCTTGTCTCGACGCCCACTGTCAC
ACTGGTGGTGCTATGATGCTGTCTTTCGCTTCCAGTCTGGCGTGGAGGGC
CTTCTGTGGGAGTGTTGCTTCGCGGTGTGTGGTGGTGGTTGGGTGCTGGT
GGGGGATGTGGGGGTGGATGCGGCAGCAGTGAAGGAAGCAGCGAGCCAAA
TGCTATGCAAGGAAGGCGGCGCCATGCACGGTTGTCTTAGCTCTTGGGAG
GAGGGGAAGGCATTCTACAGCACCTTATAAACCACTGTGCTGGTAGTGCA
GCAGCTGTTGCTCAACATGCAACAAATAACCTGGAGTAGCCTGAAGCCAA
CACCCTTGTAGCGTGACGCGTGCCTTGTCTCGGGATGCCCAAAAAACTAG
TCAACATATTTTTGCACACTTTGATACAATTTAAGCCTAACCATTGTTTG
CATCGATCTCACGAAAGAATCAATAAAATCACAACTACGGCTAAATGAAA
GTCCACATCGTCTCTTATTGGAGAATAATCTTGCGACCAATGAAAGCCCA
TAGCAGTGTATTCTGTAGCCGGCCATCTTACCCGATAACAATAATAGGCA
TATGTTGATGACAAATATTAGCTCATTCTATGCAAGTGTTTTTACGAACA
CACATTCACGCACAATTAACAATGCACACCACGCATCATACCCCGTCTAG
TGGAGTGCTACCTACCAGATGGGTACTTACTCCCACAAAAAAGAGGGGCA
TAGTTCTTAAGGGTTTATCATAAGGGCCTTTATCAAAAAGTACCTCACCC
GGGCTCGGAAGCCTGTCTCCCAATGCAATACAAATTCCTTGCCTTCCGCT
CCTCGGGCCAGGTCACGAAAGCGTCGTGAGTCGTAATCAACTATGAGCCT
CACCGACACATCCGCCCAGGCTTATAAAATTCACTCCTCTTCCTTGGATC
AGGTCATCAATGAAAGCGTGGTGCGTCATTATCAAGAATACCATCTTTAA
CCAACCAGGATTGCAAGTCTGTCTCCACGTCGTCGGGCCAGTTCGCTAAT
GAAAGCATCGTGAGTCGTAATCAACAGTGAGGCAGCACGCCCACTGAAGT
TCACCAGCCTGCCTCCCATGCCTCAACAGCCAGAGCATCACTTTATATAT
TGAAATGATACGAAACGAAAGGAGGAGGAAAATACCGGATAGAGGAATGA
AGGGGCGGTAAATTTGGACGACCGCCGCCGGCCCGCATGGATGCATCCTG
TAAGGTGGTAATGATAGTGATATGCCATACCGTAAAAATGATGATCCTTG
GAACCCAAGAAAAGCTGGACAATCATCAGGTCACACGTGTGTGTGCGATG
GTCTCCCAATTTTTCTTTTCCTCTTCGGGCCTGGACAATATCATGCCCTA
CCTTTTCTCTCCCCCATCCCCTCTCAAACACCAATCGATTCATTCTCCTG
GTTGTTTGAGTGTGCACTTGCTCTGCTATCCACAGCCTTGGGAGTGTAAC
TTCTTGTGCCGGTCCTGTCCGTTCTCAATATCCACTTCAACCCACAATGT
ACATGCAGGCACCACGAACATACCTTTCCGGCGGTGCTTTCCGCTGCGTC
GCCACCTTGACCGTGCCTTCCCACCCCTGCCTGCCGCTCCAGAGACCGTC
CTGGCAACTCGATAACCCAGCCGACGTCCTTCGATCTCTCCTTATCTTGG
CCCTGCATCAAACCACCACCATAAACTCGTAATGTCTAAGCAACGAAAGG
CGCCACTCCAACCTGGTGCCACATCGCCCACAGAGGCCGTGCCCTTGCTG
TCCCGCACCGAATCCATTGAATCGTGGGGCCTCTCCAACCCCCACGAACT
GCTCGTTTCCGCCTCTTCTCATCAGCAGCACTCGCATGAATTGCACCGGC
CTCCCACCTTCGCTCCTGTCGGCTGGCGGGACCGCCTCTCCTCTAAGAGC
AACATCGAGACCTGGGCCTTTCCTGGATGGGGTCGCTATAATCTGCAAAT
GACTGTGACGGACGAGGAGCTGGCAAAAATTGAGGCAGACATGGACCATC
GACAACCCCCTAAACTGAATCAATGGGAGGCGACGGCGATTTGTGGGAAT
GACATCATGGCCAGTTGCTTGTATGTGGTGGGGCTAGTGACGGTGTCTGC
TGGGAAGATGGCGCCTGTGGCGTTATTGATGGTGTCGTGTGTGTTGTATT
TGATCAGgtaaggtacatggggcgcatgatatgatataggataagaaaaa
gcctggggggaagggaggtccgttttacctttaatatgctttgacctcac
ctccctctccctttcccctcccgcgcccttccatcctttcccctcccgcg
cccttccatctcctagATATCTCTATGCTGAGGCGATCACTGCCCTGCCA
ATGAACGGCGGCTCGTTTAATGTTCTCCTCAATAGCACCAGCAAGGGCAT
CGCTTCCTTTGCCGCTACTCTTGCCCTCGTCTCGTACATCGCCACGGGCG
TGGTGTCTGCAACCAGTGCCATTGATTACTTGGACAAAGTCGTTAGGGTC
CCGCATCCCTTGCTAGCTATCCTGGGGCTCTTGTTCCTATTTGCGATGCT
TGTTCTGATGGGGATTAAGGAAAGCGCGGGTGTGGCGCAGATTATTCTCG
TCGTGCACATTTTCACGCTTACCCTCCTCTGTGTCTGTAGCGCCGTCTAC
GTCATCTGTGACCCCTCTACACTCCGCGAGAACCTGAATACACCCTTTCC
TGACGTCCAACTTGGTGGGATCATCCGTTCGGGATCCTTCGCCACGGCAT
TATTTTTCGGGTACAGTAGCGCGATCCTGGGTGTGTCTGGTTTCGAGAGT
TCGTCGCAGTTTGTTCAGTCCCAAGCGCCGGGGGTGTTCTTGAAGACATT
GAGGAATATGTGGGTGGGTGCCATTGTATTTAACCCGATGATCTCGTTTT
TGGCTCTCGGGGTGCTGCCGCTTGCGAGGATTGTGGAGGATGAGTCGGTG
GTCTTGGCGAAGATGGCCAAGCACGTAGGGACATGGGTGGTAGGCAGGGG
GGGGGGGATGGTGGAAATGGGTTAG

protein sequence of NO04G00540.1

>NO04G00540.1-protein ID=NO04G00540.1-protein|Name=NO04G00540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=395bp
MSKQRKAPLQPGATSPTEAVPLLSRTESIESWGLSNPHELLVSASSHQQH
SHELHRPPTFAPVGWRDRLSSKSNIETWAFPGWGRYNLQMTVTDEELAKI
EADMDHRQPPKLNQWEATAICGNDIMASCLYVVGLVTVSAGKMAPVALLM
VSCVLYLIRYLYAEAITALPMNGGSFNVLLNSTSKGIASFAATLALVSYI
ATGVVSATSAIDYLDKVVRVPHPLLAILGLLFLFAMLVLMGIKESAGVAQ
IILVVHIFTLTLLCVCSAVYVICDPSTLRENLNTPFPDVQLGGIIRSGSF
ATALFFGYSSAILGVSGFESSSQFVQSQAPGVFLKTLRNMWVGAIVFNPM
ISFLALGVLPLARIVEDESVVLAKMAKHVGTWVVGRGGGMVEMG*

Synonyms

Publications