NO04G00490.1, NO04G00490.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G00490.1
Unique NameNO04G00490.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1116
Alignment locationchr4:182213..184104 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:182213..184104 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO04G00490.1 vs.
Match: EWM28503.1 (31 kda chloroplastic [Nannochloropsis gaditana])

HSP 1 Score: 357.8 bits (917), Expect = 3.500e-95
Identity = 191/266 (71.80%), Postives = 211/266 (79.32%), Query Frame = 0 
Query:   55 AASSGRKRKRKRIRKLTKKGKEGENDD-KDEDDEDGGRD-------DDASLPLRASSSISPTAAAPGTVYVEGISYQATEDDLIRFFQDKGCGKVKEVRMPRWQDSGRPRGYAHIEFKKGGEESVGKALALNGVSMMGRYLTVQMAQAPKGGGAAAVTPGK-KPPGCDTVFVKNLPYNITEDTVRDAFTFCGKIRTIRLAIWQHTQQQKGFCYIQFEKENAAEIAVKKQGVIQVGGRKVFVDYETGAPKASYKAPNGRQWSKVQGK 312
            A S+GRKRKRKR RK  KK ++ E +    E+D   GR        D+A      S     +AAA GTVYVEGISY+ATEDDL+RFFQDKGCGKVKEVR+PRWQDSGRPRGYAHIEFKK  +E V KAL+L+G  MMGRYLTVQ AQAPK  G     P K KPPGCDTVFVKNLPYN TED VR+AFTFCGKI+T+RLA+WQHTQQQKGFCY+QFEKENAAEIAVKKQG IQVGGRKVFVDYETGAPKASY+AP+GRQWSK Q K
Sbjct:   28 AESNGRKRKRKRSRKTHKKAEDDEEEGWVSEEDGTTGRAGEEEEGYDNAPSSTPESGRPDGSAAAAGTVYVEGISYEATEDDLVRFFQDKGCGKVKEVRLPRWQDSGRPRGYAHIEFKKT-DEGVAKALSLSGARMMGRYLTVQRAQAPKSLGVGGSLPLKDKPPGCDTVFVKNLPYNTTEDAVREAFTFCGKIKTVRLAVWQHTQQQKGFCYVQFEKENAAEIAVKKQGAIQVGGRKVFVDYETGAPKASYRAPDGRQWSKAQKK 292
The following BLAST results are available for this feature:
BLAST of NO04G00490.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28503.13.500e-9571.8031 kda chloroplastic [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G00490NO04G00490Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G00490.1NO04G00490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G00490.1.cds1NO04G00490.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00490.1.cds2NO04G00490.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00490.1.cds3NO04G00490.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00490.1.cds4NO04G00490.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G00490.1 ID=NO04G00490.1|Name=NO04G00490.1|organism=Nannochloropsis oceanica|type=mRNA|length=1116bp
AGCTCAAGCCAAAGCCCACTATCTAAGCCAAACATCAAGAAGCCACGCCC
ACAATCGCACAACACACGCCATGACAAGTGCAACATCAATCGACGTCCGA
AGCGACAAAAAACCCAAGAAGTCCAAGGGCCACCAATGCGACGAGGATGA
CAACGACGACACCATCGAGCCCGTCGAGGTGCAAGAGGAAACAGCGACAG
CAGCAGCGGCGGAGGAAGAAGGAGATGATGCCGCAGCCTCCTCCGGTCGC
AAGCGCAAGCGAAAACGTATCCGCAAATTGACGAAGAAGGGCAAGGAGGG
CGAGAACGACGATAAGGACGAGGACGATGAGGATGGAGGTAGAGATGACG
ATGCGAGTCTGCCACTGCGGGCCTCCTCCTCTATCTCACCTACCGCTGCT
GCTCCAGGCACAGTCTATGTGGAAGGGATCTCGTACCAAGCCACAGAAGA
TGACCTCATTCGCTTCTTCCAAGATAAAGGCTGTGGCAAAGTGAAGGAAG
TGCGCATGCCTCGATGGCAGGACAGTGGGCGTCCGCGGGGATATGCACAC
ATCGAATTTAAGAAGGGAGGGGAGGAGAGCGTGGGAAAAGCGTTGGCGTT
GAACGGAGTGAGCATGATGGGGAGATATTTGACCGTGCAAATGGCGCAGG
CACCAAAGGGAGGGGGAGCAGCAGCAGTAACACCTGGGAAAAAACCACCT
GGCTGTGACACCGTCTTCGTTAAGAATCTGCCCTACAACATCACCGAAGA
CACCGTCAGGGACGCTTTCACCTTCTGTGGCAAGATCAGAACCATACGCC
TGGCCATCTGGCAGCACACACAGCAACAGAAAGGCTTCTGCTACATCCAA
TTTGAGAAGGAGAACGCCGCCGAAATCGCGGTGAAGAAGCAGGGGGTCAT
TCAGGTGGGCGGGAGGAAGGTCTTTGTCGACTATGAGACGGGAGCCCCCA
AGGCCAGTTACAAAGCCCCGAATGGAAGGCAGTGGAGTAAGGTGCAAGGG
AAGGGAGAAACGGCGCGAGGAGGAGGAGGGCACCGGCCACCAAAATAAAG
AAAGAAAAAAAGGGGGAGAGGAAAACCAATCTCAAACAACGCTAGTTCGA
GCGAACTGCGCGGCGA
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protein sequence of NO04G00490.1

>NO04G00490.1-protein ID=NO04G00490.1-protein|Name=NO04G00490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=326bp
MTSATSIDVRSDKKPKKSKGHQCDEDDNDDTIEPVEVQEETATAAAAEEE
GDDAAASSGRKRKRKRIRKLTKKGKEGENDDKDEDDEDGGRDDDASLPLR
ASSSISPTAAAPGTVYVEGISYQATEDDLIRFFQDKGCGKVKEVRMPRWQ
DSGRPRGYAHIEFKKGGEESVGKALALNGVSMMGRYLTVQMAQAPKGGGA
AAVTPGKKPPGCDTVFVKNLPYNITEDTVRDAFTFCGKIRTIRLAIWQHT
QQQKGFCYIQFEKENAAEIAVKKQGVIQVGGRKVFVDYETGAPKASYKAP
NGRQWSKVQGKGETARGGGGHRPPK*
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mRNA from alignment at chr4:182213..184104-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G00490.1 ID=NO04G00490.1|Name=NO04G00490.1|organism=Nannochloropsis oceanica|type=mRNA|length=1892bp|location=Sequence derived from alignment at chr4:182213..184104- (Nannochloropsis oceanica)
AGCTCAAGCCAAAGCCCACTATCTAAGCCAAACATCAAGAAGCCACGCCC
ACAATCGCACAACACACGCCATGACAAGTGCAACATCAATCGACGGTACG
TGTGTCGCTACACTTGTCGTCTGCGCCTGGCTCAGTCTCCGCCCGCATTC
CCGTACTCCCCCAGTCTTGCGGGTATAGGTGGTTGGTTGCAGTAATGCCC
AGCCGCTTCCTCTCTCCTTGCCGTCACCCACCACCCAGCCTCCATTTCGC
ACTCAATTTAGACCATACTTGTCCTCCGCGTTCTTGGTATGATTCTGTCA
TTGTCTTCCTTACCTGCTCTAATAGACATTCCCACCCCATCCCATACCAT
TCCCCCATCCCCCCATCCCCCCATCCTCACCACCTCCACTGCTCCCTTTA
CAGTCCGAAGCGACAAAAAACCCAAGAAGTCCAAGGGCCACCAATGCGAC
GAGGATGACAACGACGACACCATCGAGCCCGTCGAGGTGCAAGAGGAAAC
AGCGACAGCAGCAGCGGCGGAGGAAGAAGGAGATGATGCCGCAGCCTCCT
CCGGTCGCAAGCGCAAGCGAAAACGTATCCGCAAATTGACGAAGAAGGGC
AAGGAGGGCGAGAACGACGATAAGGACGAGGACGATGAGGATGGAGGTAG
AGATGACGATGCGAGTCTGCCACTGCGGGCCTCCTCCTCTATCTCACCTA
CCGCTGCTGCTCCAGGCACAGTCTATGTGGAAGGGATCTCGTACCAAGCC
ACAGAAGATGACCTCATTCGCTTCTTCCAAGATAAAGGCTGTGGCAAAGT
GAAGGAAGTGCGCATGCCTCGATGGCAGGACAGTGGGCGTCCGCGGGGAT
ATGCACACATCGAATTTAAGAAGGGAGGGGAGGAGAGCGTGGGAAAAGCG
TTGGCGTTGAACGGAGTGAGCATGATGGGGAGATATTTGACCGTGCAAAT
GGCGCAGGCACCAAAGGGAGGGGGAGCAGCAGCAGTAACACCTGGGAAAA
AACCACCTGGTATGTTTTCGAATGTTGGGGGGGGGGGGGAAGGATGGGAG
GGAGGGGAAGGGCGGGAGGGGGAAGGAAGGAGGGGAGAGTGTGTCCAGAT
GATGATAAAAATATAAAAAGTTTGAGATCTGCAATTTTTTTGAAGAACTT
TATACGAGTAGTGAAATGATGGGCACACATTAGAAAGGGATGTACCTAAA
TTAAGAGACATTGAGGAGAGCGACCAAGTGAGTGGATGCTGGCGTTTGGG
TTCACGGTTTACTCACCTCTCCGTCCCCCCCTCCCTCTCCGTCCTTGCCT
CCCTTCCTACCTCTCATCACAGGCTGTGACACCGTCTTCGTTAAGAATCT
GTAAGTCCTTGACATTCTTTTGGCTATTTTACTTTTCCGTTCTTCGCTCT
CCCGCCGTCTTTCCCATCCGCCTCCCAAATTTCCCAAGACTCACCCTCTC
TCTCTCCCTCCCTCTTTCATTGCCTTCCTCCCTCCTTCTTTCCCCCTCCT
TCCAGGCCCTACAACATCACCGAAGACACCGTCAGGGACGCTTTCACCTT
CTGTGGCAAGATCAGAACCATACGCCTGGCCATCTGGCAGCACACACAGC
AACAGAAAGGCTTCTGCTACATCCAATTTGAGAAGGAGAACGCCGCCGAA
ATCGCGGTGAAGAAGCAGGGGGTCATTCAGGTGGGCGGGAGGAAGGTCTT
TGTCGACTATGAGACGGGAGCCCCCAAGGCCAGTTACAAAGCCCCGAATG
GAAGGCAGTGGAGTAAGGTGCAAGGGAAGGGAGAAACGGCGCGAGGAGGA
GGAGGGCACCGGCCACCAAAATAAAGAAAGAAAAAAAGGGGGAGAGGAAA
ACCAATCTCAAACAACGCTAGTTCGAGCGAACTGCGCGGCGA
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Coding sequence (CDS) from alignment at chr4:182213..184104-

>NO04G00490.1 ID=NO04G00490.1|Name=NO04G00490.1|organism=Nannochloropsis oceanica|type=CDS|length=978bp|location=Sequence derived from alignment at chr4:182213..184104- (Nannochloropsis oceanica)
ATGACAAGTGCAACATCAATCGACGTCCGAAGCGACAAAAAACCCAAGAA
GTCCAAGGGCCACCAATGCGACGAGGATGACAACGACGACACCATCGAGC
CCGTCGAGGTGCAAGAGGAAACAGCGACAGCAGCAGCGGCGGAGGAAGAA
GGAGATGATGCCGCAGCCTCCTCCGGTCGCAAGCGCAAGCGAAAACGTAT
CCGCAAATTGACGAAGAAGGGCAAGGAGGGCGAGAACGACGATAAGGACG
AGGACGATGAGGATGGAGGTAGAGATGACGATGCGAGTCTGCCACTGCGG
GCCTCCTCCTCTATCTCACCTACCGCTGCTGCTCCAGGCACAGTCTATGT
GGAAGGGATCTCGTACCAAGCCACAGAAGATGACCTCATTCGCTTCTTCC
AAGATAAAGGCTGTGGCAAAGTGAAGGAAGTGCGCATGCCTCGATGGCAG
GACAGTGGGCGTCCGCGGGGATATGCACACATCGAATTTAAGAAGGGAGG
GGAGGAGAGCGTGGGAAAAGCGTTGGCGTTGAACGGAGTGAGCATGATGG
GGAGATATTTGACCGTGCAAATGGCGCAGGCACCAAAGGGAGGGGGAGCA
GCAGCAGTAACACCTGGGAAAAAACCACCTGGCTGTGACACCGTCTTCGT
TAAGAATCTGCCCTACAACATCACCGAAGACACCGTCAGGGACGCTTTCA
CCTTCTGTGGCAAGATCAGAACCATACGCCTGGCCATCTGGCAGCACACA
CAGCAACAGAAAGGCTTCTGCTACATCCAATTTGAGAAGGAGAACGCCGC
CGAAATCGCGGTGAAGAAGCAGGGGGTCATTCAGGTGGGCGGGAGGAAGG
TCTTTGTCGACTATGAGACGGGAGCCCCCAAGGCCAGTTACAAAGCCCCG
AATGGAAGGCAGTGGAGTAAGGTGCAAGGGAAGGGAGAAACGGCGCGAGG
AGGAGGAGGGCACCGGCCACCAAAATAA
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Synonyms
Publications