NO04G00400, NO04G00400 (gene) Nannochloropsis oceanica

Overview
NameNO04G00400
Unique NameNO04G00400
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2577
Alignment locationchr4:162710..165286 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:162710..165286 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO04G00400 vs. NCBI_GenBank
Match: XP_005854226.1 (hypothetical protein NGA_0223401 [Nannochloropsis gaditana CCMP526] >XP_005855066.1 hypothetical protein NGA_0223402 [Nannochloropsis gaditana CCMP526] >EKU21289.1 hypothetical protein NGA_0223402 [Nannochloropsis gaditana CCMP526] >EKU22133.1 hypothetical protein NGA_0223401 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 213.8 bits (543), Expect = 7.500e-52
Identity = 116/219 (52.97%), Postives = 147/219 (67.12%), Query Frame = 0 
Query:   77 TGLDADINILKMIKAGTFDFFKDALPDML-------------DTVTKEEAGLIFENFKFMKTTKAWKAFEATGNADDEEAVSAAMIKSVQEMGKVIIAARPITKDADSVTAVTDEFIQDLKDNDPSSAGLFDAVKSGDAMAIATLQQKFADKYLGGVDLDAFADNEWIERARAKFFANEDLLRLIDDNDVLDILRNPELKLHKASEMGSADPSRLLSSL 283
            T LD D ++++ IKAGTFDFF+D+LP ML             +TVTK EA  IFE F FMKTT  WK F  TG   DE+A +AAM+++V+EMG  +I AR ITKDAD+V    ++F+ DLK ND SS  L  + K G   AIATLQQKF D+YLGG+DL+ F   +W++RAR  FFA+E+LLR + D  VL  LRNP L+  K SE   ADP+R+LSSL
Sbjct:   74 TVLDPDFDMIRRIKAGTFDFFRDSLPGMLEYVGGDGSEKDWEETVTKREARQIFEQFPFMKTTNVWKRFIETGEVADEDAAAAAMVEAVREMGATLIEARSITKDADTVVQHANDFLDDLKANDASSPELVASAKRGSPRAIATLQQKFVDQYLGGIDLETF---QWVDRARDNFFADENLLRAVGDESVLSNLRNPNLRPLKVSEYEEADPARILSSL 289
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BLAST of NO04G00400 vs. NCBI_GenBank
Match: EWM28446.1 (hypothetical protein Naga_100591g1 [Nannochloropsis gaditana])

HSP 1 Score: 199.5 bits (506), Expect = 1.500e-47
Identity = 105/185 (56.76%), Postives = 145/185 (78.38%), Query Frame = 0 
Query:    4 RISVTLLVLAVI------ALITVQAKDRRADSLFGKTRQQH---QQGEAQAGETAAAPGRFTFERRRMTSEETAAAEASKVETGLDADINILKMIKAGTFDFFKDALPDMLDTVTKEEAGLIFENFKFMKTTKAWKAFEATGNADDEEAVSAAMIKSVQEMGKVIIAARPITKDADSVTAVTDEF 180
            R  V++LV+A I      +L+ V  KDRR+D+LFG+TR++H      +AQ  +    P ++TFERRR++ EE A AEA++++   + ++N+++ IKAGTFDFF DALP+ML++VTK+EAGLIFENFK MKTTKAWKAF+ +G+ +DEEAV++AMIKSVQEMG++++ AR  TKDADSVTAVTDEF
Sbjct:    2 RQHVSILVIAYIFLVSMGSLVLVSGKDRRSDTLFGRTRREHGKDASNQAQEEDLENPPPKYTFERRRLSGEEAAKAEATRIDPTYEPEMNLIQRIKAGTFDFFTDALPEMLESVTKDEAGLIFENFKVMKTTKAWKAFQESGDTEDEEAVASAMIKSVQEMGQIMLGARYFTKDADSVTAVTDEF 186
[Close]
BLAST of NO04G00400 vs. NCBI_GenBank
Match: EWM20647.1 (hypothetical protein Naga_100289g4 [Nannochloropsis gaditana])

HSP 1 Score: 191.0 bits (484), Expect = 5.200e-45
Identity = 100/178 (56.18%), Postives = 125/178 (70.22%), Query Frame = 0 
Query:  105 LDTVTKEEAGLIFENFKFMKTTKAWKAFEATGNADDEEAVSAAMIKSVQEMGKVIIAARPITKDADSVTAVTDEFIQDLKDNDPSSAGLFDAVKSGDAMAIATLQQKFADKYLGGVDLDAFADNEWIERARAKFFANEDLLRLIDDNDVLDILRNPELKLHKASEMGSADPSRLLSSL 283
            L TVTK EA  IFE F FMKTT  WK F  TG A DE+A +AAM+++V+EMG  +I AR ITKDAD+V    ++F+ DLK ND SS  L  + K G   AIATLQQKF D+YLGG+DL+ F + +W++RAR  FFA+E+LLR + D  VL  LRNP L+  K SE   ADP+R+LSSL
Sbjct:   17 LRTVTKREARQIFEQFPFMKTTNVWKRFIETGEAADEDAAAAAMVEAVREMGATLIEARSITKDADTVVQHANDFLDDLKANDASSPELVASAKRGSPRAIATLQQKFVDQYLGGIDLETFQNPQWVDRARDNFFADENLLRAVGDESVLSNLRNPNLRPLKVSEYEEADPARILSSL 194
[Close]
BLAST of NO04G00400 vs. NCBI_GenBank
Match: EWM28447.1 (hypothetical protein Naga_100627g1 [Nannochloropsis gaditana])

HSP 1 Score: 183.0 bits (463), Expect = 1.400e-42
Identity = 87/109 (79.82%), Postives = 98/109 (89.91%), Query Frame = 0 
Query:  183 LKDNDPSSAGLFDAVKSGDAMAIATLQQKFADKYLGGVDLDAFADNEWIERARAKFFANEDLLRLIDDNDVLDILRNPELKLHKASEMGSADPSRLLSSLMSSHVNNHG 292
            LK NDPS+  LFDAV+ GD  A+ATLQQ FAD+YLGGVDLDAF DNEWIE+ARA+FFANEDLLRL+DDND+LDILRNP+LKLHKASEMG+ADPSRLL+SLM SH  NHG
Sbjct:    3 LKANDPSAPRLFDAVREGDPRAVATLQQMFADRYLGGVDLDAFQDNEWIEKARARFFANEDLLRLVDDNDILDILRNPDLKLHKASEMGNADPSRLLNSLMESHARNHG 111
The following BLAST results are available for this feature:
BLAST of NO04G00400 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
XP_005854226.17.500e-5252.97hypothetical protein NGA_0223401 [Nannochloropsis ... [more]
EWM28446.11.500e-4756.76hypothetical protein Naga_100591g1 [Nannochloropsi... [more]
EWM20647.15.200e-4556.18hypothetical protein Naga_100289g4 [Nannochloropsi... [more]
EWM28447.11.400e-4279.82hypothetical protein Naga_100627g1 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL073nonsL073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR112ngnoR112Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR105ngnoR105Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004996NSK004996Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G00400.1NO04G00400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578061gene_1820Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100627g1gene2136Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G00400.1NO04G00400.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G00400 ID=NO04G00400|Name=NO04G00400|organism=Nannochloropsis oceanica|type=gene|length=2577bp
TCCTTTCATTCTTCCACGCCCTAGGCGGCCGAAGCCTCTCTGGTCGATTG
CGTCTGTCTAAACACACACTCTCTCTCATCACAAAGTACCTTACAATCAT
TTGCGTCGGGCATGCTGCACAGCACGCCTATCAGCCATTGTTCGCTCCAC
CCCACAGTTTCAAATGCTCGCCTAACTCAACTTTTCCTCCACTAATACAA
ACATCGATTACCTACCCACAGCAGAGGGACGTCGCATCCCTGCCCAAACC
ATCATCACCTGCATACCATGTCACCACGTATCTCCGTTACCTTATTGGTT
CTCGCTGTGATCGCCCTGATCACGGTGCAAGCCAAGGACCGCCGCGCCGA
CTCGCTCTTTGGCAAGACCCGTCAACAACACCAACAAGGAGAAGCCCAAG
CAGGCGAGACCGCCGCGGCCCCAGGCAGATTCACATTTGAACGTCGTCGT
ATGACTTCCGAGGAGACGGCCGCGGCCGAGGCCAGCAAGGTGGAGACCGG
CCTAGACGCGGACATTAATATCCTTAAgtgagtccggcggaagggagagg
agggaggggggatggttgagagatagggagggagaagaatgcattgagga
tgacatgggcgatcccctccaagaaatgagaaagggaatcgtttcgagga
aggaggcgtcctcgtagtgtaaaggaatctcacgctcttcgcactgtctg
tacgaccgacagGATGATCAAGGCCGGCACCTTCGACTTCTTCAAGGACG
CTCTCCCTGACATGCTTGAgtaagcccccgtagaaaaagagggaggaaga
ggaggaggaggaagaggaggaggaggaggaggaagaggaggaggaggaag
aatggccaggagaaggcctgtgtgtttggttttatgcgcatcgatatctc
ccttcagggcacgatcacttcacccgtgtcgtgatacctcgggatgagag
accaaggccttcttctcatcctccctccctcctttcgtccctcccccttt
cccctcagCACCGTGACCAAAGAGGAAGCCGGGCTCATCTTCGAGAACTT
TAAGTTCATGAAGACGACCAAGGCATGGAAGGCCTTCGAGGCCACCGGCA
ACGCCGACGACGAGGAGGCGgtacgtcattcgacttgccccttttccacc
atgcatgcatgccttcccttcctcccttcctcccttcctcagtcgtgctc
ctgtccttccatacatgccttaccttcctctctccttcccttttttaata
atattaataataataataatgttgtcctcccgcgttgcatttactggcat
gggtagcgtcagcgatgacaatgattatcctgaaaagccggggatttgct
taacccccctcccccctcccccctctcccctccccttccttgcttcctga
atcgctccctccctcccgccctccctacagGTCTCCGCAGCCATGATCAA
GTCGGTGCAAGAGATGGGAAAGGTGATAATTGCCGCTCGCCCTATCACCA
AGGACGCCGACTCCGTCACGGCTGTCACGGATGAGTTCATCCAGGATgta
gggagggagggaagaaggaagggaggggcggagcgaggggaaatgagtgt
ccctgcctgaaatcaaaggaggtctgccgttaggcacatgcgtttgaggc
cctcactcgcccgcccgccctccctccctccctccctcgcagCTGAAGGA
CAACGACCCTTCATCCGCCGGCCTGTTTGACGCGGTCAAGAGCGGGGATG
CCATGGCCATCGCTACGCTGCAGCAGAAGTTTGCAGACAAGTATCTGGGT
GGCGTCGATTTGGATGCGTTCGCGgtaggaagattcgggagggaagattc
gggagggagggagggagggagggagggaggaaggcatgcctctctctgtg
ccaatggccctcccatggcattcctcagtgtctgcctgagtagcaaggat
accctcccatccacccctccctccctccctccctccctccctccctccag
GACAACGAGTGGATCGAGCGGGCCCGAGCCAAGTTTTTCGCCAATGAGGA
CTTGCTCCGCCTCATCGACGACAATGACGTTTTGGATATACTCAGAAACC
CTGAGCTCAAGCTTCACAAGgcacggccgccctccctccctccctccctc
cctctctccttccgttgttccacttggacgctgacatcgtcatcatcgat
caaaaagcctgagcttaatctccacgacgtcaacccttcctccctccctc
cctccctcccttcatcatttcttctctttcttccccttctctctctttcg
cccctgaggtttcagaccttttattctttctcacgcctccctccctccct
ccctccctccctccctccctccctccctgttccctcctccccttccctcc
ctccttactctttctctcccctccctccagGCCAGCGAGATGGGCAGCGC
CGATCCCTCCCGATTGTTGTCCTCCCTTATGAGCAGCCACGTGAACAACC
ACGGGAATGGGCAGGAGGCTATGGCCGGTGGGATTTGAGGAGGATACCGA
GGGAGGGAGGGAGGGAGGGAGGGAGGG
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protein sequence of NO04G00400.1

>NO04G00400.1-protein ID=NO04G00400.1-protein|Name=NO04G00400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=302bp
MSPRISVTLLVLAVIALITVQAKDRRADSLFGKTRQQHQQGEAQAGETAA
APGRFTFERRRMTSEETAAAEASKVETGLDADINILKMIKAGTFDFFKDA
LPDMLDTVTKEEAGLIFENFKFMKTTKAWKAFEATGNADDEEAVSAAMIK
SVQEMGKVIIAARPITKDADSVTAVTDEFIQDLKDNDPSSAGLFDAVKSG
DAMAIATLQQKFADKYLGGVDLDAFADNEWIERARAKFFANEDLLRLIDD
NDVLDILRNPELKLHKASEMGSADPSRLLSSLMSSHVNNHGNGQEAMAGG
I*
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Synonyms
Publications