NO04G00260, NO04G00260 (gene) Nannochloropsis oceanica

Overview
NameNO04G00260
Unique NameNO04G00260
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2387
Alignment locationchr4:116765..119151 -

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Properties
Property NameValue
DescriptionYippee-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:116765..119151 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR034751Yippee
IPR004910Yippee/Mis18
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Homology
[Close]
BLAST of NO04G00260 vs. NCBI_GenBank
Match: EWM28430.1 (Yippee-like protein [Nannochloropsis gaditana])

HSP 1 Score: 126.7 bits (317), Expect = 1.100e-25
Identity = 57/76 (75.00%), Postives = 65/76 (85.53%), Query Frame = 0 
Query:  171 LDGPSVYSCCMCRTHLATDMEVVSRAFHGRGGRAFLLDKVVNISPGPSEQRMLMTGLHSVSDLRCATCHTVLGWQY 247
            L GP VY+C  CR HLATDMEVVSRAF GRGGRAFLLD VVN+S GPSE+R+LMTGLH+VSD+ CA C TV+GW+Y
Sbjct:  214 LQGPRVYACGFCRMHLATDMEVVSRAFQGRGGRAFLLDDVVNVSFGPSEERLLMTGLHAVSDVCCAGCQTVVGWKY 289
[Close]
BLAST of NO04G00260 vs. NCBI_GenBank
Match: OEU21086.1 (yippee-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 110.5 bits (275), Expect = 7.900e-21
Identity = 45/93 (48.39%), Postives = 65/93 (69.89%), Query Frame = 0 
Query:  168 MVHLDGPSVYSCCMCRTHLATDMEVVSRAFHGRGGRAFLLDKVVNISPGPSEQRMLMTGLHSVSDLRCATCHTVLGWQYVRREREGGRKGSGR 261
            MV+LDGP +Y+C  CRTHL +  E++S++FHGR GRA+L D  VN++ GP+E R+L+TGLHSV D+ C  C  ++GW Y R   +  +   G+
Sbjct:  137 MVYLDGPQIYTCAQCRTHLTSHDEIISKSFHGRHGRAYLFDDCVNVTIGPAEDRILITGLHSVCDIFCKRCKNLVGWTYYRAYEDSQKYKEGK 229
[Close]
BLAST of NO04G00260 vs. NCBI_GenBank
Match: XP_002181629.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC46843.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 109.8 bits (273), Expect = 1.400e-20
Identity = 42/81 (51.85%), Postives = 62/81 (76.54%), Query Frame = 0 
Query:  168 MVHLDGPSVYSCCMCRTHLATDMEVVSRAFHGRGGRAFLLDKVVNISPGPSEQRMLMTGLHSVSDLRCATCHTVLGWQYVR 249
            MV+LDGP VY+C  CRTHL +  +++S++FHGR GRA+L D+ VN+  GPS++R LMTG+H V D+ C  C +++GW Y++
Sbjct:    1 MVYLDGPQVYACAQCRTHLTSHDDIISKSFHGRHGRAYLFDQCVNVRNGPSQERWLMTGMHQVCDIFCKRCDSMVGWTYLK 81
[Close]
BLAST of NO04G00260 vs. NCBI_GenBank
Match: XP_008351275.1 (PREDICTED: protein yippee-like At4g27745 [Malus domestica] >XP_008351276.1 PREDICTED: protein yippee-like At4g27745 [Malus domestica] >XP_008351277.1 PREDICTED: protein yippee-like At4g27745 [Malus domestica] >XP_008351278.1 PREDICTED: protein yippee-like At4g27745 [Malus domestica] >XP_017182117.1 PREDICTED: protein yippee-like At4g27745 [Malus domestica] >XP_017182118.1 PREDICTED: protein yippee-like At4g27745 [Malus domestica])

HSP 1 Score: 107.8 bits (268), Expect = 5.100e-20
Identity = 49/99 (49.49%), Postives = 64/99 (64.65%), Query Frame = 0 
Query:  168 MVHLDGPSVYSCCMCRTHLATDMEVVSRAFHGRGGRAFLLDKVVNISPGPSEQRMLMTGLHSVSDLRCATCHTVLGWQYVRREREGGRKGSGREEWKEG 267
            M  L GP +YSCC CR H+A   +V+S+AF GR GRAFL    +NI+ GP E R LMTGLH+V+D+ C  CH VLGW+Y R   +        +++KEG
Sbjct:    1 MAELVGPRLYSCCNCRNHVALHDDVISKAFQGRNGRAFLFSHAMNITVGPKEDRQLMTGLHTVADVSCCDCHEVLGWKYERAYEQ-------TQKYKEG 92
[Close]
BLAST of NO04G00260 vs. NCBI_GenBank
Match: XP_008356553.1 (PREDICTED: protein yippee-like At4g27745 [Malus domestica] >XP_008356554.1 PREDICTED: protein yippee-like At4g27745 [Malus domestica] >XP_008356555.1 PREDICTED: protein yippee-like At4g27745 [Malus domestica] >XP_017183572.1 PREDICTED: protein yippee-like At4g27745 [Malus domestica] >XP_017183573.1 PREDICTED: protein yippee-like At4g27745 [Malus domestica] >XP_017183574.1 PREDICTED: protein yippee-like At4g27745 [Malus domestica])

HSP 1 Score: 107.8 bits (268), Expect = 5.100e-20
Identity = 49/99 (49.49%), Postives = 64/99 (64.65%), Query Frame = 0 
Query:  168 MVHLDGPSVYSCCMCRTHLATDMEVVSRAFHGRGGRAFLLDKVVNISPGPSEQRMLMTGLHSVSDLRCATCHTVLGWQYVRREREGGRKGSGREEWKEG 267
            M  L GP +YSCC CR H+A   +V+S+AF GR GRAFL    +NI+ GP E R LMTGLH+V+D+ C  CH VLGW+Y R   +        +++KEG
Sbjct:    1 MAELVGPRLYSCCNCRNHVALHBDVISKAFQGRNGRAFLFSHAMNITVGPKEDRQLMTGLHTVADVSCCDCHEVLGWKYERAYEQ-------TQKYKEG 92
[Close]
BLAST of NO04G00260 vs. NCBI_GenBank
Match: XP_009358682.1 (PREDICTED: protein yippee-like At4g27745 [Pyrus x bretschneideri] >XP_009358683.1 PREDICTED: protein yippee-like At4g27745 [Pyrus x bretschneideri])

HSP 1 Score: 107.8 bits (268), Expect = 5.100e-20
Identity = 49/99 (49.49%), Postives = 64/99 (64.65%), Query Frame = 0 
Query:  168 MVHLDGPSVYSCCMCRTHLATDMEVVSRAFHGRGGRAFLLDKVVNISPGPSEQRMLMTGLHSVSDLRCATCHTVLGWQYVRREREGGRKGSGREEWKEG 267
            M  L GP +YSCC CR H+A   +V+S+AF GR GRAFL    +NI+ GP E R LMTGLH+V+D+ C  CH VLGW+Y R   +        +++KEG
Sbjct:    1 MAELVGPRLYSCCNCRNHVALHDDVISKAFQGRNGRAFLFSHAMNITVGPKEDRQLMTGLHTVADVSCCDCHEVLGWKYERAYEQ-------TQKYKEG 92
[Close]
BLAST of NO04G00260 vs. NCBI_GenBank
Match: XP_008245691.1 (PREDICTED: protein yippee-like At4g27745 [Prunus mume])

HSP 1 Score: 107.5 bits (267), Expect = 6.700e-20
Identity = 49/99 (49.49%), Postives = 63/99 (63.64%), Query Frame = 0 
Query:  168 MVHLDGPSVYSCCMCRTHLATDMEVVSRAFHGRGGRAFLLDKVVNISPGPSEQRMLMTGLHSVSDLRCATCHTVLGWQYVRREREGGRKGSGREEWKEG 267
            M    GP +YSCC CR H+A   +V+S+AF GR GRAFL    +NI+ GP E R LMTGLH+V+D+ C  CH VLGW+Y R   E        +++KEG
Sbjct:    1 MAEFVGPRLYSCCNCRNHVALHDDVISKAFQGRNGRAFLFSHAMNITVGPKENRQLMTGLHTVADVSCCDCHEVLGWKYERAYEE-------TQKYKEG 92
[Close]
BLAST of NO04G00260 vs. NCBI_GenBank
Match: XP_022029475.1 (protein yippee-like At4g27745 isoform X1 [Helianthus annuus])

HSP 1 Score: 107.5 bits (267), Expect = 6.700e-20
Identity = 48/99 (48.48%), Postives = 63/99 (63.64%), Query Frame = 0 
Query:  168 MVHLDGPSVYSCCMCRTHLATDMEVVSRAFHGRGGRAFLLDKVVNISPGPSEQRMLMTGLHSVSDLRCATCHTVLGWQYVRREREGGRKGSGREEWKEG 267
            M  + GP +YSCC CR H+A   ++VS+AF GR GR+FL    +NIS GP E R  MTGLH+V D+ C  CH VLGW+Y+R           R+++KEG
Sbjct:    1 MAEMGGPRLYSCCNCRNHVALHDDIVSKAFQGRNGRSFLFSHAMNISTGPKEDRRYMTGLHTVVDVYCCDCHEVLGWKYIRAY-------DRRQKYKEG 92
[Close]
BLAST of NO04G00260 vs. NCBI_GenBank
Match: XP_022138242.1 (protein yippee-like At4g27745 [Momordica charantia] >XP_022138243.1 protein yippee-like At4g27745 [Momordica charantia] >XP_022138244.1 protein yippee-like At4g27745 [Momordica charantia])

HSP 1 Score: 107.5 bits (267), Expect = 6.700e-20
Identity = 45/81 (55.56%), Postives = 57/81 (70.37%), Query Frame = 0 
Query:  168 MVHLDGPSVYSCCMCRTHLATDMEVVSRAFHGRGGRAFLLDKVVNISPGPSEQRMLMTGLHSVSDLRCATCHTVLGWQYVR 249
            M  L GP +YSCC CR H+A   +++S+AF GR GRAFL    +NI+ GP E R LMTGLH+V+D+ C  CH VLGW+Y R
Sbjct:    1 MAELLGPRLYSCCNCRNHVAFHDDIISKAFQGRHGRAFLFSHAMNITVGPKEDRHLMTGLHTVADVHCVDCHVVLGWKYER 81
[Close]
BLAST of NO04G00260 vs. NCBI_GenBank
Match: XP_009358676.1 (PREDICTED: protein yippee-like At4g27745 [Pyrus x bretschneideri] >XP_009358677.1 PREDICTED: protein yippee-like At4g27745 [Pyrus x bretschneideri] >XP_009358678.1 PREDICTED: protein yippee-like At4g27745 [Pyrus x bretschneideri] >XP_009358679.1 PREDICTED: protein yippee-like At4g27745 [Pyrus x bretschneideri] >XP_009358680.1 PREDICTED: protein yippee-like At4g27745 [Pyrus x bretschneideri] >XP_018503482.1 PREDICTED: protein yippee-like At4g27745 [Pyrus x bretschneideri] >XP_018503483.1 PREDICTED: protein yippee-like At4g27745 [Pyrus x bretschneideri] >XP_018503484.1 PREDICTED: protein yippee-like At4g27745 [Pyrus x bretschneideri])

HSP 1 Score: 107.1 bits (266), Expect = 8.800e-20
Identity = 49/99 (49.49%), Postives = 64/99 (64.65%), Query Frame = 0 
Query:  168 MVHLDGPSVYSCCMCRTHLATDMEVVSRAFHGRGGRAFLLDKVVNISPGPSEQRMLMTGLHSVSDLRCATCHTVLGWQYVRREREGGRKGSGREEWKEG 267
            M  L GP +YSCC CR H+A   +V+S+AF GR GRAFL    +NI+ GP E R LMTGLH+V+D+ C  CH VLGW+Y R   +        +++KEG
Sbjct:    1 MAGLVGPRLYSCCNCRNHVALHDDVISKAFQGRNGRAFLFSHAMNITVGPKEDRQLMTGLHTVADVSCCDCHEVLGWKYERAYEQ-------TQKYKEG 92
The following BLAST results are available for this feature:
BLAST of NO04G00260 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28430.11.100e-2575.00Yippee-like protein [Nannochloropsis gaditana][more]
OEU21086.17.900e-2148.39yippee-domain-containing protein [Fragilariopsis c... [more]
XP_002181629.11.400e-2051.85predicted protein, partial [Phaeodactylum tricornu... [more]
XP_008351275.15.100e-2049.49PREDICTED: protein yippee-like At4g27745 [Malus do... [more]
XP_008356553.15.100e-2049.49PREDICTED: protein yippee-like At4g27745 [Malus do... [more]
XP_009358682.15.100e-2049.49PREDICTED: protein yippee-like At4g27745 [Pyrus x ... [more]
XP_008245691.16.700e-2049.49PREDICTED: protein yippee-like At4g27745 [Prunus m... [more]
XP_022029475.16.700e-2048.48protein yippee-like At4g27745 isoform X1 [Helianth... [more]
XP_022138242.16.700e-2055.56protein yippee-like At4g27745 [Momordica charantia... [more]
XP_009358676.18.800e-2049.49PREDICTED: protein yippee-like At4g27745 [Pyrus x ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL073nonsL073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR112ngnoR112Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G00260.2NO04G00260.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO04G00260.1NO04G00260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577987gene_1807Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100388g2gene2153Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G00260.2NO04G00260.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO04G00260.1NO04G00260.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G00260 ID=NO04G00260|Name=NO04G00260|organism=Nannochloropsis oceanica|type=gene|length=2387bp
ACTGTAGCGGGAGTGTCGCTGTTACAACAAGCGCCGCATAAGAAGTGGGA
GACGCAAAAGAGCTGAGATATGGCCACGACGGTGATGCCTTCAACGCCTT
TCTTCGTTCACCCTCCTGCTCATCCTCCTGTGCAGAGCCACCAGGAGGGC
GATAGCGATAGCGACGAAGAGGTTGAGCACTTGCAGGAGGAGGAGGAAAA
TGATGAGGAAGAGGGAGAGGGCCCGGTGGTACCTTGGTGGGCGCAGCAGC
TCCCGCAAGCTCCCGCGGAAGAAGGTGGGAGGTCAGATCAGCAGCAGCAC
CAACAGCAACAGCAGCAGCAACGGCAGCACGAAAGTGGTCGTTGCGAGGG
GTCCGTGACATACCTTCTCCGTCAGCTCTTTTTCCCGCTCCTGAGGCCTC
TGTCCGCGGCATTAAAAAAGGCGCAAGGGCATGCAGTAGGGCAACAGCAC
CAACAGCAGCAGCAGCAGCAGCACCCCCATCACCATGGAGAACGGTCGGA
AGATGGATCGTATACGAGACAAGAGCAGCAACAGAAAAAGAAGAACAAGA
AGGACGAGGACGAGGGTAGGATGGTGCACCTGGACGGGCCTTCGGTTTAT
TCCTGTTGCATGTGTCGCACGCATTTGGCCACGGATATGGAGGTGGTTTC
AAGGgtgaggaagacgggagggtggcaaggcggcggggggggagggaggg
gggatagtcgaaggggatgaaggggaatgttgggaacactagatgcatgt
atcacacacagacataactcgtcccctctcccgccttaacacctcacaca
tacatatatagGCCTTCCACGGACGGGGTGGACGTGCCTTTCTCCTCGAC
AAAGTgtgagtacctcctcatccctccctccctctctttccctcccaccc
atttttccctttcgcccgccaactacttatgctcgacggccttgcgattc
cctccctccctccctccctctctcccttcctccccttcctcacccagCGT
CAACATATCACCTGGTCCCTCGGAGCAGCGCATGCTTATGACGGGCCTCC
ACTCCGTGTCCGATTTGAGGTGTGCCACATGTCACACAGTGCTGGGGTGG
CAATATgtacgtagggagagggagggagggaggaaggggtcagggaggga
ggaatggaaagaaggatgaaagacggagaacaagggaatctcgacgaatg
ggagaaagggagggagagagagagggaacggcatcggactcacgtcgtat
tgttttcattacgcatgcatgcagGACAAGGCATTTGAGCCCAGTCAGAA
GTACAAGGAGGGGAAATTCGTCCTGGAGATGGTGCACGTGCGCTTGGAGG
AGGAAGAGGAGGAAGAGGAGGCGGAATGGTGAAAGAGGGAGGGAGGGAGA
AGGGGAGGGAGAGTGTGAATACGAAGGAGATGTGAGTAGATATCAAGGAG
GTGTGAAGCAAGAGGGAGGGAGGGAGGGAAGGAGGGAGGGAGGGAGGGAG
GGAGGGATAGTGGCGGTGTACAGATAGACGTCATTTATGGGTTCAAACAA
TAGAAAGAAAATGTAGAGAGTGCACGAGAAAAAGGAGAAGAAGCGTAAGA
AAGAGAGCAGAGAAGGAGGGGACAATTAAGAGAGGGGAAGAAGAAGACGA
AAAAGACGAAGAACAAGAAGAAGAAGGAGGAGTAGAAGAAGACAAAGAGA
GAGCGAAAGAGAGAGAGAGAGGATGATGGATATAGCTAGGGGAGAAGACG
GTTTGCCATCACGCCACTGACAAACACTCATGGTTCGGTGAAAAACAACA
AGGAGAGATAGAAATTGACGGCGATGTAGCAGAAGAAGGAAGGAAGCAAG
TGTGTGTATATATGTGAGGGTCATCTCGGCGGGAGTCCATGCGAGATCGT
GCAAATGTCCGAGGAAATCGACAAAGGACAAAGAGGGGCTTGGAGCGAAG
GAGGAGGGAGAGTAATATCAGCAGGTCTCATGTCGTGTGAGGTTTCCCAC
CCTCTGTTTGCATTATCGTCGCTCTGCCTGTCGTTGCGGTTGTTGTTGTC
GTCGGGGTGATGAAAAAGAGCGAGAGAGAACGCGCATGAGCGTTGATGAA
ATAGTGTTGATGTATTTCATAGTGTGGATGTAATGCGCCCATGCCCCGTG
TAGAGAGGAAGGATAAGAAGAACAGGAAGAAGACGACGACGACGACGAAG
AAACAGACGAATGAGAAGATGAAGACGACGACGACGAAGAAGAATAAGTA
GAAGAAGAAGACGAAGAAAAGAATAGAGGAAGGAAACGGGGAGTGGGATG
ATTGAGCAGAGGAAGAGAAGAAATCCCGCCTTGATACAAATCCCTAAAAC
CAAAACACACAAAAGATGGAACGAATCAAAACAGCCT
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protein sequence of NO04G00260.2

>NO04G00260.2-protein ID=NO04G00260.2-protein|Name=NO04G00260.2|organism=Nannochloropsis oceanica|type=polypeptide|length=267bp
MATTVMPSTPFFVHPPAHPPVQSHQEGDSDSDEEVEHLQEEEENDEEEGE
GPVVPWWAQQLPQAPAEEGGRSDQQQHQQQQQQQRQHESGRCEGSVTYLL
RQLFFPLLRPLSAALKKAQGHAVGQQHQQQQQQQHPHHHGERSEDGSYTR
QEQQQKKKNKKDEDEGRMVHLDGPSVYSCCMCRTHLATDMEVVSRAFHGR
GGRAFLLDKVVNISPGPSEQRMLMTGLHSVSDLRCATCHTVLGWQYVRRE
REGGRKGSGREEWKEG*
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protein sequence of NO04G00260.1

>NO04G00260.1-protein ID=NO04G00260.1-protein|Name=NO04G00260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=282bp
MATTVMPSTPFFVHPPAHPPVQSHQEGDSDSDEEVEHLQEEEENDEEEGE
GPVVPWWAQQLPQAPAEEGGRSDQQQHQQQQQQQRQHESGRCEGSVTYLL
RQLFFPLLRPLSAALKKAQGHAVGQQHQQQQQQQHPHHHGERSEDGSYTR
QEQQQKKKNKKDEDEGRMVHLDGPSVYSCCMCRTHLATDMEVVSRAFHGR
GGRAFLLDKVVNISPGPSEQRMLMTGLHSVSDLRCATCHTVLGWQYDKAF
EPSQKYKEGKFVLEMVHVRLEEEEEEEEAEW*
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Synonyms
Publications