NO04G00050, NO04G00050 (gene) Nannochloropsis oceanica

Overview
NameNO04G00050
Unique NameNO04G00050
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2561
Alignment locationchr4:25604..28164 -

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Properties
Property NameValue
DescriptionSoluble NSF Attachment Protein (SNAP) Receptor (SNARE)
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:25604..28164 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000727T_SNARE_dom
Vocabulary: Cellular Component
TermDefinition
GO:0030173integral component of Golgi membrane
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0015031protein transport
Homology
BLAST of NO04G00050 vs. NCBI_GenBank
Match: CBJ30525.1 (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) [Ectocarpus siliculosus])

HSP 1 Score: 103.2 bits (256), Expect = 8.900e-19
Identity = 55/118 (46.61%), Postives = 72/118 (61.02%), Query Frame = 0
Query:   67 GGMPQAGPGRPSNYYSMPEDRVRESSRNMFEDENNRRIADLAGQVSMLKELTIDIGTEVRSQNTLLDDMGNGFSRTDGLMGSTMRRLNKMLTTSSSRHMLWLVVFIVFXXXXXYYIIR 185
            G   + G      YYS P DR++E++ N+ E +NN  I DL+ QVS LK LTIDIG EVRSQN L+  M        GL+G T+RR+N M+    SRHM +LV FIVF     +YI++
Sbjct:    6 GSQGRGGSSTGGGYYSAPTDRIKETNHNIMEMQNNAHIDDLSDQVSRLKHLTIDIGQEVRSQNDLISGMEGQMFDARGLLGGTLRRINTMMAQGGSRHMCYLVAFIVFTFMAIWYILK 123          
BLAST of NO04G00050 vs. NCBI_GenBank
Match: OEU15535.1 (hypothetical protein FRACYDRAFT_218342 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 90.5 bits (223), Expect = 6.000e-15
Identity = 43/98 (43.88%), Postives = 69/98 (70.41%), Query Frame = 0
Query:   90 ESSRNMFEDENNRRIADLAGQVSMLKELTIDIGTEVRSQNTLLDDMGNGFSRTDGLMGSTMRRLNKMLTTSSSRHMLWLVVFIVFXXXXXYYIIRHKG 188
            +++ N+ E +NN RI++L+ QV+ LK LT+DIG+EVR QN+LLD MG GF  T  ++  ++ ++  ML TSS +HM ++V+F+VF     Y+++  KG
Sbjct:   17 DTNSNILEQQNNDRISELSEQVARLKGLTVDIGSEVREQNSLLDKMGEGFLSTGDMLQGSLAKIGIMLDTSSGKHMCYMVLFVVFVVLFLYWMMTFKG 114          
BLAST of NO04G00050 vs. NCBI_GenBank
Match: XP_002181150.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC47073.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 89.4 bits (220), Expect = 1.300e-14
Identity = 50/132 (37.88%), Postives = 78/132 (59.09%), Query Frame = 0
Query:   56 SKSNSSRGAYGGGMPQAGPGRPSNYYSMPEDRVRESSRNMFEDENNRRIADLAGQVSMLKELTIDIGTEVRSQNTLLDDMGNGFSRTDGLMGSTMRRLNKMLTTSSSRHMLWLVVFIVFXXXXXYYIIRHKG 188
            ++SN   G+    M   G G  + Y      R  +++ N+ E +NN RI +L+  V+ LK LTIDIG EVR QN+LLD+MG+GF  T  ++  ++RR+  ML +   +HM ++V F VF     ++++ HKG
Sbjct:   12 ARSNGPTGSEQNNM--HGRGHRNGYDVEGGGRRNDANANILESQNNDRINELSDHVARLKGLTIDIGNEVREQNSLLDNMGDGFENTRDMLAGSLRRIGTMLESGGMKHMCYMVAFCVFVMLFLWWLMSHKG 141          
BLAST of NO04G00050 vs. NCBI_GenBank
Match: XP_002291336.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED91443.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 89.4 bits (220), Expect = 1.300e-14
Identity = 43/95 (45.26%), Postives = 66/95 (69.47%), Query Frame = 0
Query:   90 ESSRNMFEDENNRRIADLAGQVSMLKELTIDIGTEVRSQNTLLDDMGNGFSRTDGLMGSTMRRLNKMLTTSSSRHMLWLVVFIVFXXXXXYYIIR 185
            E++ N+ E++NN RI +L+ QV+ LK LTIDIG EVR QN+LLD+MG GFS    ++  ++ R+  ML +  ++HM +LV F+VF     Y+++R
Sbjct:   40 ETNANIMENQNNDRINELSDQVARLKGLTIDIGNEVREQNSLLDNMGEGFSNVGDMLTGSLARIGTMLESGGAKHMCYLVAFVVFVMVFLYWLVR 134          
BLAST of NO04G00050 vs. NCBI_GenBank
Match: EJK65357.1 (hypothetical protein THAOC_13789, partial [Thalassiosira oceanica])

HSP 1 Score: 85.5 bits (210), Expect = 1.900e-13
Identity = 47/122 (38.52%), Postives = 75/122 (61.48%), Query Frame = 0
Query:   66 GGGMPQAGPGRPSNYYSMPEDRVRESSRNMFEDENNRRIADLAGQVSMLKELTIDIGTEVRSQNTLLDDMGNGFSRTDGLMGSTMRRLNKMLTTSSSRHMLWLVVFIVFXXXXXYYIIRHKG 188
            G G P++G    S++         E++ N+ E +NN RI++L+ QV+ LK LTIDIG EVR QN+LLD+MG+GF+    ++  ++ R+  ML    ++HM +LV F+VF     Y+++   G
Sbjct:   17 GRGGPRSGNRGMSSH---------EANANIMEQQNNDRISELSDQVARLKGLTIDIGNEVREQNSLLDNMGDGFTNVGDMLSGSLARMGIMLERGGAKHMCYLVCFVVFVMVFLYWLVNIPG 129          
BLAST of NO04G00050 vs. NCBI_GenBank
Match: XP_006818810.1 (PREDICTED: BET1 homolog [Saccoglossus kowalevskii])

HSP 1 Score: 83.6 bits (205), Expect = 7.300e-13
Identity = 42/92 (45.65%), Postives = 62/92 (67.39%), Query Frame = 0
Query:   95 MFEDENNRRIADLAGQVSMLKELTIDIGTEVRSQNTLLDDMGNGFSRTDGLMGSTMRRLNKMLTTSSSRHMLWLVVFIVFXXXXXYYIIRHK 187
            + EDEN + +  L  +VS LKELTIDIG EVR+QN +L DM + F ++ G++ STM RL +M  +  +R++L+L++F  F     +YIIR K
Sbjct:   19 ILEDENEKLVDGLHNKVSQLKELTIDIGVEVRAQNKMLGDMDDDFDKSHGILSSTMGRLKRMAASGHNRYILYLMLFAFFVFFITWYIIRSK 110          
BLAST of NO04G00050 vs. NCBI_GenBank
Match: XP_003382430.1 (PREDICTED: BET1 homolog [Amphimedon queenslandica])

HSP 1 Score: 81.3 bits (199), Expect = 3.600e-12
Identity = 50/123 (40.65%), Postives = 71/123 (57.72%), Query Frame = 0
Query:   69 MPQAGPGRPSN----YYSMP---EDRVRESSRNMFEDENNRRIADLAGQVSMLKELTIDIGTEVRSQNTLLDDMGNGFSRTDGLMGSTMRRLNKMLTTSSSRHMLWLVVFIVFXXXXXYYIIR 185
            M +A P  P N    +YS P    D     ++ M E+EN++ +  L  +VS LK L+IDIG EVR QN LL+DMG  F  T GL+  TM+RL+ +     +R M +++V IVF     Y+II+
Sbjct:    1 MRRAYPSSPYNQQQGHYSAPGVNSDMSMSKAQEMLEEENDQLVDSLKHKVSALKSLSIDIGDEVRGQNRLLNDMGKDFDTTGGLLSGTMKRLHGLSQGGHNRWMCYMIVLIVFVFIVLYFIIK 123          
BLAST of NO04G00050 vs. NCBI_GenBank
Match: GAX28605.1 (blocked early in transport 1 [Fistulifera solaris])

HSP 1 Score: 80.5 bits (197), Expect = 6.200e-12
Identity = 50/136 (36.76%), Postives = 77/136 (56.62%), Query Frame = 0
Query:   51 SGHMPSKSNSSRGAYGGGMPQAGPGRPSNYYSMPEDRVRESSRNMFEDENNRRIADLAGQVSMLKELTIDIGTEVRSQNTLLDDMGNGFSRTDGLMGSTMRRLNKMLTTSSSRHMLWLVVFIVFXXXXXYYIIRHK 187
            S H  S S+  +G YG        GR  N         R+++  + E +NN RI +L+  V+ LK LTIDIG EVR QN+LLD M +GF  T  L+ S++ R+  ML +  ++HM +LV F VF     +++++++
Sbjct:    9 SNHSSSDSDMYKGGYG----DIEGGRRGNRNGFSS---RDTNTGILEQQNNERINELSEHVARLKGLTIDIGDEVRQQNSLLDGMNDGFQNTRDLLQSSLMRIGTMLESGGAKHMCYLVGFSVFVMVFLWWLMKYQ 137          
BLAST of NO04G00050 vs. NCBI_GenBank
Match: XP_004347478.2 (hypothetical protein CAOG_04731 [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 80.1 bits (196), Expect = 8.100e-12
Identity = 40/95 (42.11%), Postives = 60/95 (63.16%), Query Frame = 0
Query:   90 ESSRNMFEDENNRRIADLAGQVSMLKELTIDIGTEVRSQNTLLDDMGNGFSRTDGLMGSTMRRLNKMLTTSSSRHMLWLVVFIVFXXXXXYYIIR 185
            E + +M E EN+R +  L+ ++ +LK LTI IG E R+ N +LDDM   FS T  L+G+TM+RL  +  + + R M +LV F+VF     Y++IR
Sbjct:   49 EHTEHMMESENDRIVGQLSQKIQLLKSLTISIGDEARADNAMLDDMHGDFSSTSNLLGNTMKRLKGITNSGNGRLMCYLVAFVVFVFLVIYWLIR 143          
BLAST of NO04G00050 vs. NCBI_GenBank
Match: KJE94031.1 (hypothetical protein CAOG_004731 [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 80.1 bits (196), Expect = 8.100e-12
Identity = 40/95 (42.11%), Postives = 60/95 (63.16%), Query Frame = 0
Query:   90 ESSRNMFEDENNRRIADLAGQVSMLKELTIDIGTEVRSQNTLLDDMGNGFSRTDGLMGSTMRRLNKMLTTSSSRHMLWLVVFIVFXXXXXYYIIR 185
            E + +M E EN+R +  L+ ++ +LK LTI IG E R+ N +LDDM   FS T  L+G+TM+RL  +  + + R M +LV F+VF     Y++IR
Sbjct:   41 EHTEHMMESENDRIVGQLSQKIQLLKSLTISIGDEARADNAMLDDMHGDFSSTSNLLGNTMKRLKGITNSGNGRLMCYLVAFVVFVFLVIYWLIR 135          
The following BLAST results are available for this feature:
BLAST of NO04G00050 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CBJ30525.18.900e-1946.61Soluble NSF Attachment Protein (SNAP) Receptor (SN... [more]
OEU15535.16.000e-1543.88hypothetical protein FRACYDRAFT_218342 [Fragilario... [more]
XP_002181150.11.300e-1437.88predicted protein [Phaeodactylum tricornutum CCAP ... [more]
XP_002291336.11.300e-1445.26predicted protein [Thalassiosira pseudonana CCMP13... [more]
EJK65357.11.900e-1338.52hypothetical protein THAOC_13789, partial [Thalass... [more]
XP_006818810.17.300e-1345.65PREDICTED: BET1 homolog [Saccoglossus kowalevskii][more]
XP_003382430.13.600e-1240.65PREDICTED: BET1 homolog [Amphimedon queenslandica][more]
GAX28605.16.200e-1236.76blocked early in transport 1 [Fistulifera solaris][more]
XP_004347478.28.100e-1242.11hypothetical protein CAOG_04731 [Capsaspora owczar... [more]
KJE94031.18.100e-1242.11hypothetical protein CAOG_004731 [Capsaspora owcza... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL073nonsL073Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR085ncniR085Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR112ngnoR112Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004955NSK004955Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G00050.1NO04G00050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|612034gene_10650Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G00050.1NO04G00050.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G00050 ID=NO04G00050|Name=NO04G00050|organism=Nannochloropsis oceanica|type=gene|length=2561bp
TGTGTGTCTTTTTTTATCATTTTCGTTGACTTTTTCTGTGCCATTTCATC
TCCATCCACTCCTTTGTGCTTGCTTTTCATTTTCTTTTCCCTGCGTTCTA
CCTATCGTTCAATCCCACTCGACTCTTCTTCTTTCCTTCTCGCTTGTTCT
CTCTCCCTGCCTCCTGACTTTCTTGCCCTCACCTTCTATTTATTCCCTTG
TCTTCGAGCCCATTCCATGTTATTCTTTTCCTTTTCTCCTCTAATTCATC
TAGCCATGGCCCCCTGGCTCTTCCCAATTCTCTTCTTCCCTCTCTTGCTC
TTAATTCCTCTCCACCCGCAGGATTTCTTCTTTCTTCGCTTTTTAGCATC
TAGCTTTATTGCTCGATGCTCTTTTACCAATCCACGCTCGCGATGGCGGA
CTCCTGGATCCCTTGTTAAATGTTGTGTATTTTTTTTATTTCACTCTTCA
CCTGGACGATACCCCGGAGTATCTCAATCCCATGGGAAGAGCAATCAGGT
CTTTTGCATTCCAAAAAATTTCGCTGCCTGTGCGGTTCTGATACATATAT
GCACCCTCTCGACTATTATGAATTTTCGATACGTTCCGATCTGTCCCATC
AATCCCGTCTATTTTCACGCCCAAAATAATTCCAGGGTGGGGAACGCATG
TGATATGTTTGGAAGCGAGGACTAGTCGAGAGAACGAAGAGAGCTGAGCA
TTGATGCGGAGGGGTGAAGCGTAAGTGGTTGCAGTGTGCATACGCTTGTC
AAAACACCAGAACAAGGCGAGATGGAAGACATAACTCGGCGTTGTGATTC
CGAGTAATTTCGAGCCCCCCTATGCGGGTAGACGGCTGCTTCCTTTCAAG
TACTGTATATAAGCCCGAGTACAAGGTCTTTTTGTGCCCAAAAGAGGAAA
GATGGCGTGAAGGGACGCGCTTTTTGTGACAAAAGATGGTTTGGGGAGCA
CAAGCGGCCTTGGCGGTAGCGGCGTCAGGAAAACGGTCAGAGATGGTGTT
GACGCTTCTCTCACCGTCGCCCTCTACACGCACAGTGGCGCCTCCACCGC
CGCACATGAGAAGACGGCCAGAGGACAACTACAGCAGTGGGCACATGCCA
AGTAAGAGTAACAGCAGCCGGGGCGCGTACGGTGGTGGAATGCCGCAAGC
CGGGCCCGGCAGACCGgtacgtggggagatagatgcctgcccgtgtaggg
ctggctataggcactggcacgtgtggttggaggggattggaaactattgg
catcggctcccagtgtgtcgtgtgtgcttcttttctcatgcatacacggc
acggcagcatcatcacgcttttactctgtctgctcacgcatgcccccttc
ccattccacccctccagTCCAACTACTATTCAATGCCAGAGGACCGAGTC
CGTGAGTCAAGCCGGAATATGTTTGAGGATGAGAATAACAGGCGCATCGC
AGACTTGGCCGGGCAAGTCTCCATGCTCAAGGAGgtacgtcatgaactca
aggagagaggaagtgcaggagtagggatggcatggtgctgggcaaatgtt
tagctagtcaaggttggtagctacttgcaagtgattgagatgtgtgatga
gcaagaagggggcgcaggtgggaagcaatctgggcgggatgctgatggaa
cggcgcgtggatgaaaggagaaattttgtaagcaatgaaaaagcttacag
gagcttgagtgtagtgaggccttcagcggagagcggtgtgtccaaaatgc
agattgtatacatgaaagagagaaaaaggagtggtaaaatgtatcgtcga
agtgataccaaggctttttttaatgggatgcaacgaagtgtctacaaaca
cgctgaagtcgtctaaattattttctatccctgattttctccaccatcct
ctacctcatatcccacgccgcagCTGACAATTGACATAGGCACGGAAGTC
CGCTCCCAAAATACTCTCCTCGATGACATGgtgagcacatttttggttag
gtagacaaggaaagaagaggagggagaatgggggaatattcaggtttaaa
aggagaaaggaccgtgtctgtcgcacactggcgaaattccgttgaccaaa
actctgtggaatcgattaattgctatccgcgaccgtgacactccaccctt
ctctctcatcgtatcaacgcgcagGGCAACGGGTTTTCACGCACAGATGG
GTTGATGGGCTCCACCATGCGGCGGCTGAACAAGATGCTCACCACCTCCT
CAAGCCGGCACATGCTCTGGCTTGTGGTGTTTATTGTCTTTGTCTTCATC
TTCGTCTACTACATCATTAGGCACAAGGGCTGAAGGGAAGGCAGGAGGAA
AGGAGGGATGGAGAAGGAATTGAGGGAAGGAAAATGATGTGTCAGGAAAG
GAATGAGATGGATCGGACAAAAGATTACGGTGGAAATGGCACAATTTAAA
ATTTGTTTATACGCACGTGCGAATGAGATAGGGAAACTGGAAATGAGAAG
ACGTTGGCGATGATGTGGAGAAAAAGAAATACCACCAAAATAGTTTTTAA
TTTGTGGGAGT
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protein sequence of NO04G00050.1

>NO04G00050.1-protein ID=NO04G00050.1-protein|Name=NO04G00050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=188bp
MVWGAQAALAVAASGKRSEMVLTLLSPSPSTRTVAPPPPHMRRRPEDNYS
SGHMPSKSNSSRGAYGGGMPQAGPGRPSNYYSMPEDRVRESSRNMFEDEN
NRRIADLAGQVSMLKELTIDIGTEVRSQNTLLDDMGNGFSRTDGLMGSTM
RRLNKMLTTSSSRHMLWLVVFIVFVFIFVYYIIRHKG*
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Synonyms
Publications