NO04G00050, NO04G00050 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO04G00050 vs. NCBI_GenBank
Match: CBJ30525.1 (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) [Ectocarpus siliculosus]) HSP 1 Score: 103.2 bits (256), Expect = 8.900e-19 Identity = 55/118 (46.61%), Postives = 72/118 (61.02%), Query Frame = 0 Query: 67 GGMPQAGPGRPSNYYSMPEDRVRESSRNMFEDENNRRIADLAGQVSMLKELTIDIGTEVRSQNTLLDDMGNGFSRTDGLMGSTMRRLNKMLTTSSSRHMLWLVVFIVFXXXXXYYIIR 185 G + G YYS P DR++E++ N+ E +NN I DL+ QVS LK LTIDIG EVRSQN L+ M GL+G T+RR+N M+ SRHM +LV FIVF +YI++ Sbjct: 6 GSQGRGGSSTGGGYYSAPTDRIKETNHNIMEMQNNAHIDDLSDQVSRLKHLTIDIGQEVRSQNDLISGMEGQMFDARGLLGGTLRRINTMMAQGGSRHMCYLVAFIVFTFMAIWYILK 123
BLAST of NO04G00050 vs. NCBI_GenBank
Match: OEU15535.1 (hypothetical protein FRACYDRAFT_218342 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 90.5 bits (223), Expect = 6.000e-15 Identity = 43/98 (43.88%), Postives = 69/98 (70.41%), Query Frame = 0 Query: 90 ESSRNMFEDENNRRIADLAGQVSMLKELTIDIGTEVRSQNTLLDDMGNGFSRTDGLMGSTMRRLNKMLTTSSSRHMLWLVVFIVFXXXXXYYIIRHKG 188 +++ N+ E +NN RI++L+ QV+ LK LT+DIG+EVR QN+LLD MG GF T ++ ++ ++ ML TSS +HM ++V+F+VF Y+++ KG Sbjct: 17 DTNSNILEQQNNDRISELSEQVARLKGLTVDIGSEVREQNSLLDKMGEGFLSTGDMLQGSLAKIGIMLDTSSGKHMCYMVLFVVFVVLFLYWMMTFKG 114
BLAST of NO04G00050 vs. NCBI_GenBank
Match: XP_002181150.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC47073.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 89.4 bits (220), Expect = 1.300e-14 Identity = 50/132 (37.88%), Postives = 78/132 (59.09%), Query Frame = 0 Query: 56 SKSNSSRGAYGGGMPQAGPGRPSNYYSMPEDRVRESSRNMFEDENNRRIADLAGQVSMLKELTIDIGTEVRSQNTLLDDMGNGFSRTDGLMGSTMRRLNKMLTTSSSRHMLWLVVFIVFXXXXXYYIIRHKG 188 ++SN G+ M G G + Y R +++ N+ E +NN RI +L+ V+ LK LTIDIG EVR QN+LLD+MG+GF T ++ ++RR+ ML + +HM ++V F VF ++++ HKG Sbjct: 12 ARSNGPTGSEQNNM--HGRGHRNGYDVEGGGRRNDANANILESQNNDRINELSDHVARLKGLTIDIGNEVREQNSLLDNMGDGFENTRDMLAGSLRRIGTMLESGGMKHMCYMVAFCVFVMLFLWWLMSHKG 141
BLAST of NO04G00050 vs. NCBI_GenBank
Match: XP_002291336.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED91443.1 predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 89.4 bits (220), Expect = 1.300e-14 Identity = 43/95 (45.26%), Postives = 66/95 (69.47%), Query Frame = 0 Query: 90 ESSRNMFEDENNRRIADLAGQVSMLKELTIDIGTEVRSQNTLLDDMGNGFSRTDGLMGSTMRRLNKMLTTSSSRHMLWLVVFIVFXXXXXYYIIR 185 E++ N+ E++NN RI +L+ QV+ LK LTIDIG EVR QN+LLD+MG GFS ++ ++ R+ ML + ++HM +LV F+VF Y+++R Sbjct: 40 ETNANIMENQNNDRINELSDQVARLKGLTIDIGNEVREQNSLLDNMGEGFSNVGDMLTGSLARIGTMLESGGAKHMCYLVAFVVFVMVFLYWLVR 134
BLAST of NO04G00050 vs. NCBI_GenBank
Match: EJK65357.1 (hypothetical protein THAOC_13789, partial [Thalassiosira oceanica]) HSP 1 Score: 85.5 bits (210), Expect = 1.900e-13 Identity = 47/122 (38.52%), Postives = 75/122 (61.48%), Query Frame = 0 Query: 66 GGGMPQAGPGRPSNYYSMPEDRVRESSRNMFEDENNRRIADLAGQVSMLKELTIDIGTEVRSQNTLLDDMGNGFSRTDGLMGSTMRRLNKMLTTSSSRHMLWLVVFIVFXXXXXYYIIRHKG 188 G G P++G S++ E++ N+ E +NN RI++L+ QV+ LK LTIDIG EVR QN+LLD+MG+GF+ ++ ++ R+ ML ++HM +LV F+VF Y+++ G Sbjct: 17 GRGGPRSGNRGMSSH---------EANANIMEQQNNDRISELSDQVARLKGLTIDIGNEVREQNSLLDNMGDGFTNVGDMLSGSLARMGIMLERGGAKHMCYLVCFVVFVMVFLYWLVNIPG 129
BLAST of NO04G00050 vs. NCBI_GenBank
Match: XP_006818810.1 (PREDICTED: BET1 homolog [Saccoglossus kowalevskii]) HSP 1 Score: 83.6 bits (205), Expect = 7.300e-13 Identity = 42/92 (45.65%), Postives = 62/92 (67.39%), Query Frame = 0 Query: 95 MFEDENNRRIADLAGQVSMLKELTIDIGTEVRSQNTLLDDMGNGFSRTDGLMGSTMRRLNKMLTTSSSRHMLWLVVFIVFXXXXXYYIIRHK 187 + EDEN + + L +VS LKELTIDIG EVR+QN +L DM + F ++ G++ STM RL +M + +R++L+L++F F +YIIR K Sbjct: 19 ILEDENEKLVDGLHNKVSQLKELTIDIGVEVRAQNKMLGDMDDDFDKSHGILSSTMGRLKRMAASGHNRYILYLMLFAFFVFFITWYIIRSK 110
BLAST of NO04G00050 vs. NCBI_GenBank
Match: XP_003382430.1 (PREDICTED: BET1 homolog [Amphimedon queenslandica]) HSP 1 Score: 81.3 bits (199), Expect = 3.600e-12 Identity = 50/123 (40.65%), Postives = 71/123 (57.72%), Query Frame = 0 Query: 69 MPQAGPGRPSN----YYSMP---EDRVRESSRNMFEDENNRRIADLAGQVSMLKELTIDIGTEVRSQNTLLDDMGNGFSRTDGLMGSTMRRLNKMLTTSSSRHMLWLVVFIVFXXXXXYYIIR 185 M +A P P N +YS P D ++ M E+EN++ + L +VS LK L+IDIG EVR QN LL+DMG F T GL+ TM+RL+ + +R M +++V IVF Y+II+ Sbjct: 1 MRRAYPSSPYNQQQGHYSAPGVNSDMSMSKAQEMLEEENDQLVDSLKHKVSALKSLSIDIGDEVRGQNRLLNDMGKDFDTTGGLLSGTMKRLHGLSQGGHNRWMCYMIVLIVFVFIVLYFIIK 123
BLAST of NO04G00050 vs. NCBI_GenBank
Match: GAX28605.1 (blocked early in transport 1 [Fistulifera solaris]) HSP 1 Score: 80.5 bits (197), Expect = 6.200e-12 Identity = 50/136 (36.76%), Postives = 77/136 (56.62%), Query Frame = 0 Query: 51 SGHMPSKSNSSRGAYGGGMPQAGPGRPSNYYSMPEDRVRESSRNMFEDENNRRIADLAGQVSMLKELTIDIGTEVRSQNTLLDDMGNGFSRTDGLMGSTMRRLNKMLTTSSSRHMLWLVVFIVFXXXXXYYIIRHK 187 S H S S+ +G YG GR N R+++ + E +NN RI +L+ V+ LK LTIDIG EVR QN+LLD M +GF T L+ S++ R+ ML + ++HM +LV F VF +++++++ Sbjct: 9 SNHSSSDSDMYKGGYG----DIEGGRRGNRNGFSS---RDTNTGILEQQNNERINELSEHVARLKGLTIDIGDEVRQQNSLLDGMNDGFQNTRDLLQSSLMRIGTMLESGGAKHMCYLVGFSVFVMVFLWWLMKYQ 137
BLAST of NO04G00050 vs. NCBI_GenBank
Match: XP_004347478.2 (hypothetical protein CAOG_04731 [Capsaspora owczarzaki ATCC 30864]) HSP 1 Score: 80.1 bits (196), Expect = 8.100e-12 Identity = 40/95 (42.11%), Postives = 60/95 (63.16%), Query Frame = 0 Query: 90 ESSRNMFEDENNRRIADLAGQVSMLKELTIDIGTEVRSQNTLLDDMGNGFSRTDGLMGSTMRRLNKMLTTSSSRHMLWLVVFIVFXXXXXYYIIR 185 E + +M E EN+R + L+ ++ +LK LTI IG E R+ N +LDDM FS T L+G+TM+RL + + + R M +LV F+VF Y++IR Sbjct: 49 EHTEHMMESENDRIVGQLSQKIQLLKSLTISIGDEARADNAMLDDMHGDFSSTSNLLGNTMKRLKGITNSGNGRLMCYLVAFVVFVFLVIYWLIR 143
BLAST of NO04G00050 vs. NCBI_GenBank
Match: KJE94031.1 (hypothetical protein CAOG_004731 [Capsaspora owczarzaki ATCC 30864]) HSP 1 Score: 80.1 bits (196), Expect = 8.100e-12 Identity = 40/95 (42.11%), Postives = 60/95 (63.16%), Query Frame = 0 Query: 90 ESSRNMFEDENNRRIADLAGQVSMLKELTIDIGTEVRSQNTLLDDMGNGFSRTDGLMGSTMRRLNKMLTTSSSRHMLWLVVFIVFXXXXXYYIIR 185 E + +M E EN+R + L+ ++ +LK LTI IG E R+ N +LDDM FS T L+G+TM+RL + + + R M +LV F+VF Y++IR Sbjct: 41 EHTEHMMESENDRIVGQLSQKIQLLKSLTISIGDEARADNAMLDDMHGDFSSTSNLLGNTMKRLKGITNSGNGRLMCYLVAFVVFVFLVIYWLIR 135 The following BLAST results are available for this feature:
BLAST of NO04G00050 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO04G00050 ID=NO04G00050|Name=NO04G00050|organism=Nannochloropsis oceanica|type=gene|length=2561bpback to top protein sequence of NO04G00050.1 >NO04G00050.1-protein ID=NO04G00050.1-protein|Name=NO04G00050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=188bpback to top Synonyms
Publications
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