NO04G00030, NO04G00030 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO04G00030 vs. NCBI_GenBank
Match: EWM28406.1 (ubiquitin carboxyl-terminal hydrolase 3 [Nannochloropsis gaditana]) HSP 1 Score: 259.6 bits (662), Expect = 1.400e-65 Identity = 154/321 (47.98%), Postives = 195/321 (60.75%), Query Frame = 0 Query: 30 VDVGGEVEPRQTCPHLHLASHLHISPDDLASSVTPGRCMTCGSEVEPWVCLGCKCAVHCSRYVNADAEAHFFASLTAERE------ERWRDVVTGESSGEGRGGRRL-NTATGMPFPNGGGRSRQEE---GKGHGLVLSLSDLSVWCYLCSSYVKHDRLVPFLVRAEALKFNTPDKTALLAGIQTRFQTGLVLPNGMDDAEEEKEGVADVKPTPAQCVFEHLKACSLLAKTVRVGSVAEAQARGDLRSVLVLSEGEADGEEEGEIIEMGMGGEIMVMPSEKEEVREALAAGKELVVVRVGLGGIAAGPQDVEVMLRQMLEA 341 +D GGEVEP+QTCPH+H +SHL ++PDDL S+ G+C C S +EPWVCLGC AVHCSRYVNADAEAHFFASLTA E ER D TG + L N G+ E +GHGL LSLSDLSVWCY+C SYVKHDRL+P LVRAEALKF+TP+K LL G QTRF+TG+V+P + E + K TP Q +F+HLK+ SLLAK + + EA+A L+SVLVL G + + E G + V ++ +++A+ EL VVRVG + G + +E LR ML + Sbjct: 10 LDAGGEVEPKQTCPHIHSSSHLSLTPDDLLFSIQAGQCGVCKSRMEPWVCLGCN-AVHCSRYVNADAEAHFFASLTATSEKRSLHFERRGDQSTGFVDSFISIHKELTNRKAGVGDVKAEVMENVESENASEGHGLALSLSDLSVWCYICGSYVKHDRLLPLLVRAEALKFSTPEKVMLLEGAQTRFRTGIVIPQSL------TEDIPGSKSTPIQELFDHLKSRSLLAKMIPFHDLNEARACEGLQSVLVLERGSQASDSISDRTE--AGSKNSVARKLRDRIQKAILEKDELTVVRVGRKEVEEGVESLESCLRLMLSS 321
BLAST of NO04G00030 vs. NCBI_GenBank
Match: XP_001978099.2 (LOW QUALITY PROTEIN: uncharacterized protein Dere_GG17876 [Drosophila erecta] >EDV47026.2 LOW QUALITY PROTEIN: uncharacterized protein Dere_GG17876 [Drosophila erecta]) HSP 1 Score: 84.0 bits (206), Expect = 1.000e-12 Identity = 64/195 (32.82%), Postives = 82/195 (42.05%), Query Frame = 0 Query: 36 VEPRQTCPHLHLASHLHISPDDLASSVTPG-RCMTCGSEVEPWVCLGCKCAVHCSRYVNADAEAHFFASLTAEREERWRDVVTGESSGEGRGGRRLNTATGMPFPNGGGRSRQEEGKGHGLVLSLSDLSVWCYLCSSYVKHDRLVPFLVRAEALKFNTPDKTALLAGIQTRFQTG--LVLPNGMDDAEEEKEGVA 228 V P +TCPHL L + P++ S+ G C CGS E WVCLGC+ V C RY+NA E H S+ A+ H L +S +DLSVWCY CS+YV H RL +L KF P A G R + G V PNG D+ ++ + VA Sbjct: 981 VYPLKTCPHLRL-----LRPEEAPQSLDSGAACSVCGSTGENWVCLGCR-LVACGRYMNAHMEQH---SVEAQ---------------------------------------------HPLAMSTADLSVWCYACSAYVDHPRLYAYLNALHVHKFQEP--MAWTHGCAWR-EDGCYAVGPNGRDEDADQDDAVA 1118
BLAST of NO04G00030 vs. NCBI_GenBank
Match: XP_017093105.1 (PREDICTED: histone deacetylase 6 isoform X1 [Drosophila bipectinata]) HSP 1 Score: 82.4 bits (202), Expect = 3.000e-12 Identity = 54/159 (33.96%), Postives = 65/159 (40.88%), Query Frame = 0 Query: 36 VEPRQTCPHLHLASHLHISPDDLASSV-TPGRCMTCGSEVEPWVCLGCKCAVHCSRYVNADAEAHFFASLTAEREERWRDVVTGESSGEGRGGRRLNTATGMPFPNGGGRSRQEEGKGHGLVLSLSDLSVWCYLCSSYVKHDRLVPFLVRAEALKFNTP 194 V P +TCPHL L + P+++ S+ T C C S VE W+CL C+ V C RYVN + H F S H LV+SL DLSVWCY CSSY+ H RL FL A KF P Sbjct: 987 VYPLKTCPHLSL-----LRPEEVPKSINTRAACSECESCVENWMCLSCR-TVACGRYVNEHMQLHCFES------------------------------------------------EHPLVMSLRDLSVWCYACSSYIDHPRLYAFLNAAHLDKFREP 1091
BLAST of NO04G00030 vs. NCBI_GenBank
Match: XP_016924053.1 (PREDICTED: histone deacetylase 6 isoform X1 [Drosophila suzukii]) HSP 1 Score: 79.7 bits (195), Expect = 1.900e-11 Identity = 52/159 (32.70%), Postives = 66/159 (41.51%), Query Frame = 0 Query: 36 VEPRQTCPHLHLASHLHISPDDLASSVTPG-RCMTCGSEVEPWVCLGCKCAVHCSRYVNADAEAHFFASLTAEREERWRDVVTGESSGEGRGGRRLNTATGMPFPNGGGRSRQEEGKGHGLVLSLSDLSVWCYLCSSYVKHDRLVPFLVRAEALKFNTP 194 V P +TCPHL L + P++ S+ G C CGS E WVCL C+ V C RYVN D E H ++ A+ H L +S++DLSVWCY+CSSYV H L +L KF P Sbjct: 982 VYPLKTCPHLSL-----LRPEEAPQSINSGAACSVCGSTGENWVCLSCR-LVGCGRYVNGDMELH---AVEAQ---------------------------------------------HPLAMSMADLSVWCYVCSSYVDHPCLYAYLNPLHVDKFQEP 1086
BLAST of NO04G00030 vs. NCBI_GenBank
Match: XP_016924054.1 (PREDICTED: histone deacetylase 6 isoform X2 [Drosophila suzukii]) HSP 1 Score: 79.7 bits (195), Expect = 1.900e-11 Identity = 52/159 (32.70%), Postives = 66/159 (41.51%), Query Frame = 0 Query: 36 VEPRQTCPHLHLASHLHISPDDLASSVTPG-RCMTCGSEVEPWVCLGCKCAVHCSRYVNADAEAHFFASLTAEREERWRDVVTGESSGEGRGGRRLNTATGMPFPNGGGRSRQEEGKGHGLVLSLSDLSVWCYLCSSYVKHDRLVPFLVRAEALKFNTP 194 V P +TCPHL L + P++ S+ G C CGS E WVCL C+ V C RYVN D E H ++ A+ H L +S++DLSVWCY+CSSYV H L +L KF P Sbjct: 969 VYPLKTCPHLSL-----LRPEEAPQSINSGAACSVCGSTGENWVCLSCR-LVGCGRYVNGDMELH---AVEAQ---------------------------------------------HPLAMSMADLSVWCYVCSSYVDHPCLYAYLNPLHVDKFQEP 1073
BLAST of NO04G00030 vs. NCBI_GenBank
Match: XP_017074443.1 (PREDICTED: histone deacetylase 6 isoform X1 [Drosophila eugracilis]) HSP 1 Score: 79.7 bits (195), Expect = 1.900e-11 Identity = 52/159 (32.70%), Postives = 64/159 (40.25%), Query Frame = 0 Query: 36 VEPRQTCPHLHLASHLHISPDDLASSVTPG-RCMTCGSEVEPWVCLGCKCAVHCSRYVNADAEAHFFASLTAEREERWRDVVTGESSGEGRGGRRLNTATGMPFPNGGGRSRQEEGKGHGLVLSLSDLSVWCYLCSSYVKHDRLVPFLVRAEALKFNTP 194 V P +TCPHL L + P++ S+ G C CGS E WVCL C+ V C RY+N E H GH LV+S++DLSVWCY+CSSYV H RL +L KF P Sbjct: 983 VYPLKTCPHLTL-----LRPEEAPQSINSGAACSICGSTGENWVCLCCR-IVGCGRYMNQHMEQHSLE------------------------------------------------MGHPLVMSMADLSVWCYVCSSYVDHPRLYAYLNPLHMDKFKEP 1087
BLAST of NO04G00030 vs. NCBI_GenBank
Match: XP_002100654.2 (LOW QUALITY PROTEIN: uncharacterized protein Dyak_GE17180 [Drosophila yakuba] >EDX01762.2 LOW QUALITY PROTEIN: uncharacterized protein Dyak_GE17180 [Drosophila yakuba]) HSP 1 Score: 79.3 bits (194), Expect = 2.500e-11 Identity = 62/194 (31.96%), Postives = 77/194 (39.69%), Query Frame = 0 Query: 36 VEPRQTCPHLHLASHLHISPDDLASSVTPG-RCMTCGSEVEPWVCLGCKCAVHCSRYVNADAEAHFFASLTAEREERWRDVVTGESSGEGRGGRRLNTATGMPFPNGGGRSRQEEGKGHGLVLSLSDLSVWCYLCSSYVKHDRLVPFLVRAEALKFNTPDKTALLAGIQTRFQTGLVL-PNGMDDAEEEKEGVA 228 V P +TCPHL L + P++ S+ G C CGS E WVCL C+ V C RY+NA E H S H L +S +DLSVWCY CS+YV H RL +L KF P A G R L P+G D E+ ++GVA Sbjct: 989 VYPLKTCPHLRL-----LRPEEAPQSLDSGAACSVCGSTGENWVCLSCR-LVACGRYMNAHMEQHAVES------------------------------------------------QHPLAMSTADLSVWCYACSAYVDHPRLYAYLNPLHVDKFQEP--MAWTHGCARREDGCYALGPDGRD--EDSEDGVA 1124
BLAST of NO04G00030 vs. NCBI_GenBank
Match: ACN94041.1 (histone deacetylase 6 isoform A [Drosophila melanogaster] >ACN94175.1 histone deacetylase 6 isoform A [Drosophila melanogaster] >ACN94215.1 histone deacetylase 6 isoform A [Drosophila melanogaster]) HSP 1 Score: 78.6 bits (192), Expect = 4.300e-11 Identity = 53/159 (33.33%), Postives = 65/159 (40.88%), Query Frame = 0 Query: 36 VEPRQTCPHLHLASHLHISPDDLASSVTPG-RCMTCGSEVEPWVCLGCKCAVHCSRYVNADAEAHFFASLTAEREERWRDVVTGESSGEGRGGRRLNTATGMPFPNGGGRSRQEEGKGHGLVLSLSDLSVWCYLCSSYVKHDRLVPFLVRAEALKFNTP 194 V P +TCPHL L + P++ S+ G C CGS E WVCL C+ V C RYVNA E H S +E+ H L +S +DLSVWCY CS+YV H RL +L KF P Sbjct: 980 VYPLKTCPHLRL-----LRPEEAPRSLDSGAECSVCGSTGENWVCLSCR-HVACGRYVNAHMEQH---------------------------------------------SVEEQ---HPLAMSTADLSVWCYACSAYVDHPRLYAYLNPLHEDKFQEP 1084
BLAST of NO04G00030 vs. NCBI_GenBank
Match: ACN94042.1 (histone deacetylase 6 isoform B [Drosophila melanogaster] >ACN94178.1 histone deacetylase 6 isoform B [Drosophila melanogaster] >ACN94218.1 histone deacetylase 6 isoform B [Drosophila melanogaster]) HSP 1 Score: 78.6 bits (192), Expect = 4.300e-11 Identity = 53/159 (33.33%), Postives = 65/159 (40.88%), Query Frame = 0 Query: 36 VEPRQTCPHLHLASHLHISPDDLASSVTPG-RCMTCGSEVEPWVCLGCKCAVHCSRYVNADAEAHFFASLTAEREERWRDVVTGESSGEGRGGRRLNTATGMPFPNGGGRSRQEEGKGHGLVLSLSDLSVWCYLCSSYVKHDRLVPFLVRAEALKFNTP 194 V P +TCPHL L + P++ S+ G C CGS E WVCL C+ V C RYVNA E H S +E+ H L +S +DLSVWCY CS+YV H RL +L KF P Sbjct: 987 VYPLKTCPHLRL-----LRPEEAPRSLDSGAECSVCGSTGENWVCLSCR-HVACGRYVNAHMEQH---------------------------------------------SVEEQ---HPLAMSTADLSVWCYACSAYVDHPRLYAYLNPLHEDKFQEP 1091
BLAST of NO04G00030 vs. NCBI_GenBank
Match: ACN94043.1 (histone deacetylase 6 isoform C [Drosophila melanogaster] >ACN94179.1 histone deacetylase 6 isoform C [Drosophila melanogaster] >ACN94219.1 histone deacetylase 6 isoform C [Drosophila melanogaster]) HSP 1 Score: 78.6 bits (192), Expect = 4.300e-11 Identity = 53/159 (33.33%), Postives = 65/159 (40.88%), Query Frame = 0 Query: 36 VEPRQTCPHLHLASHLHISPDDLASSVTPG-RCMTCGSEVEPWVCLGCKCAVHCSRYVNADAEAHFFASLTAEREERWRDVVTGESSGEGRGGRRLNTATGMPFPNGGGRSRQEEGKGHGLVLSLSDLSVWCYLCSSYVKHDRLVPFLVRAEALKFNTP 194 V P +TCPHL L + P++ S+ G C CGS E WVCL C+ V C RYVNA E H S +E+ H L +S +DLSVWCY CS+YV H RL +L KF P Sbjct: 990 VYPLKTCPHLRL-----LRPEEAPRSLDSGAECSVCGSTGENWVCLSCR-HVACGRYVNAHMEQH---------------------------------------------SVEEQ---HPLAMSTADLSVWCYACSAYVDHPRLYAYLNPLHEDKFQEP 1094 The following BLAST results are available for this feature:
BLAST of NO04G00030 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO04G00030 ID=NO04G00030|Name=NO04G00030|organism=Nannochloropsis oceanica|type=gene|length=2290bpback to top protein sequence of NO04G00030.1 >NO04G00030.1-protein ID=NO04G00030.1-protein|Name=NO04G00030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=342bpback to top Synonyms
Publications
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