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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr30 | genome | chr30:302278..304916 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO30G00830.2 vs.
Match: EWM20718.1 (hypothetical protein Naga_100385g3 [Nannochloropsis gaditana]) HSP 1 Score: 110.5 bits (275), Expect = 7.300e-21 Identity = 117/275 (42.55%), Postives = 147/275 (53.45%), Query Frame = 0
Query: 1 MPPTRLP-----TLPLLALLLFLLPALPITQAFS--------------TPSLFLSRA-----VRGGAIASSSSS-------SSSLSPAGAVELLIDAAFNRKVTKDQVVAALDLLEQHRRSSYFTTTPTTAPDFFSTFFPPFPSLSTLPHSVLPSLLRKSGKWEIVFSSILRNGYMPSFVCEVVSLSSLPSSSSPSSSSSSSSSSSSRRRSSSSSSSSSSSRNDMPSLPSSR-MRIDTSAVGGKVPLGSVVGDYAWQQEEGLEKMVFGFDTFEVG 244
+P RLP +LPLL LL ++ L T AF +P L L R V+G + SSSS SSS + A +V +L DAA +RKV K QV+AAL++LE S + + P ST FP + S L S+L + K G+WEIVFSS+L GYMP+ VCEVVS+S+L SSPSSS SSS S+ LP+SR +RIDTSA GG +PLG VVGDY W EG KM FGF+ FE+G
Sbjct: 11 IPRWRLPFPQYFSLPLL--LLLVVDLLNRTHAFQAGRLALKHLNEGIRSPPLMLQRPCWPLRVKGADLPPSSSSTTAAVTSSSSYTQAASVAILRDAARHRKVDKSQVIAALEVLE----GSKLPSPSSKKPGILSTLFPASGTPSLLS-SLLEAGGDKGGEWEIVFSSLLGAGYMPALVCEVVSVSAL---SSPSSSPSSSPSA---------------------PLPASRPIRIDTSAAGGLLPLGCVVGDYVW---EG-NKMTFGFNRFELG 250
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO30G00830.2 ID=NO30G00830.2|Name=NO30G00830.2|organism=Nannochloropsis oceanica|type=mRNA|length=2202bp
GGTGTGACTGTAGATGAGAAGGATGGAGTAGTAGGGGATGTGGGGGAAAG
AGGAGTGAGATGAGGGTGGACGTGGTGCTGGTTCTACTGGTGGCCGGCGG
GTGGACAAGAGGAATGAAGTCAAAGGCCACGCAGCACGCTTGAATAGAGT
AAGAGAGAGGCACGGATTGCTGTATTGTGTGTGTTGATGTATGTGTGTGT
TTGTGCGCGTGTGCGCGTGTGTAGGCAGGGTGTAGCATGGGCGTGTACGG
GTGTATCGTGTCGTGTAGGCAATGGTGGTGGAATCATCATAGGACGCGAA
GCAAGCTAAGGCTCGGCTTTCACCACGTCTCTGCCGAGCCCGGTGCGAAG
CATGGTCGCAGAGTATCGAAGCCTGATATAAGGTCTATAAGCTTGCGAGT
GGATGCGGGTATGGTTGGGCCGGTGAAAGAAGTGGCACAAAGGCCGTTCA
CGCAACATCACACCCGAAGATCACTCTGCCGTGCATGTTGGGGAGAGGTG
TCGTGTCGACGTTGACCAAAGCAACGGCCGCGCAGCCTCCCGGAGTAATC
GATGTCAAGGGCGCACGCAAGCAACACCAGCACAATAAGACAGGCTGATA
AGGGGCCGTACAGAGAAAAGATGCCCAAGAAAAGGCCTTCTAGTGCTTTT
TGGCTCGTGCGTCGCCTTTCTGCCGACAAGGCGTGGAGTGTCGAGACCCG
CCGACGCATGCGTCTCCCTTAGCCTGTGTTCGCTTCCCTGTCACCCATTC
TCAAAACGCCACAGCCCCGACGCAAGACGTGGGGCCATGGCAGGAGACAT
GGTGAGAACAGAGAGGGCAAAGATTGCAACTCATGCATATGGAAAATTGT
AGACGTGTGAATAGAGCAGGGACGGAAGGACTGGATGCGTCGACGCGGAG
GCAGCAAAGGCGAGAGCAGCGAGCCCACAGGATTATGACCGAATGGGCAT
GCGAAATGTTGGGGGTTGAGAGAAGGAGGTCAAAGAAGCCTCCCCTCCCC
CAAGACAAAGCAAGAAACGCCCTGGCCTCCAAGCTCTCGATCTTCCCACA
CACCAAAAAGCATGCCGCCAACAAGACTACCAACCCTTCCCCTCCTCGCC
CTTCTTCTCTTCCTCCTTCCAGCCCTCCCCATCACCCAAGCCTTCTCCAC
TCCTTCGCTTTTCCTTTCTCGAGCTGTCCGGGGAGGAGCCATTGCTTCCT
CTTCCTCTTCTTCTTCGTCCCTGTCGCCGGCGGGAGCAGTGGAGTTGCTA
ATCGACGCCGCATTCAACCGAAAAGTCACGAAAGACCAAGTTGTCGCCGC
CCTCGATCTTCTTGAACAGCATCGCCGATCTTCCTACTTTACCACCACCC
CTACCACTGCGCCCGACTTTTTCTCCACCTTCTTTCCTCCCTTCCCCTCC
TTGAGTACCCTTCCGCACTCAGTGCTTCCCTCTCTCCTTCGCAAGAGTGG
GAAGTGGGAGATTGTGTTTTCGTCCATCCTCAGGAATGGTTACATGCCCT
CCTTTGTCTGTGAAGTAGTCTCCCTCTCCTCCCTCCCCTCCTCCTCCTCT
CCCTCCTCCTCCTCCTCCTCCTCCTCGAGCAGCAGCAGTAGGAGGAGGAG
TAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTCGCAATGACATGCCGTCCC
TCCCTTCCTCCCGGATGCGGATAGATACGTCCGCGGTTGGAGGAAAAGTA
CCGTTGGGAAGCGTTGTGGGAGACTACGCGTGGCAGCAAGAAGAGGGGCT
GGAGAAAATGGTATTCGGATTTGATACATTCGAGGTAGGTAGGTAGGGAG
GGAGTGAGAGAGGGGGGAATGAGAGGGAGGGCTAGGTTTGTATTTTGTGC
TACAATATTTTTTCACCACTTGCTGTCTCTGTGTCCCATCTCTCCTTCCC
TCCCTTCATCTCTCCCTCTTTCCCTCCCTTCGTCCCTCCCTCCTTCAGCT
AGGTCCACTTTCCCTGCCCATGAAGAAGAAGCTCAAGACCTACTCCTTCT
TTTGGGTGGACGACAAGATTGCCTGTGCAAGGAGCAGTTCTGGTGGACTC
ACCCTGATGCGGGCAAGTGAACTATCCCTGGACCAAAGAAATGCTATAAA
TAAATAAAAAGTAAACCAAGAAATGTAAAGGCGGAGAGGCACTAAGTACC
AAAAGTCTTCAAGCTCATCAAATTAGGAAATTTACGCTCTTGAAAGACCG
AT back to topprotein sequence of NO30G00830.2 >NO30G00830.2-protein ID=NO30G00830.2-protein|Name=NO30G00830.2|organism=Nannochloropsis oceanica|type=polypeptide|length=245bp
MPPTRLPTLPLLALLLFLLPALPITQAFSTPSLFLSRAVRGGAIASSSSS
SSSLSPAGAVELLIDAAFNRKVTKDQVVAALDLLEQHRRSSYFTTTPTTA
PDFFSTFFPPFPSLSTLPHSVLPSLLRKSGKWEIVFSSILRNGYMPSFVC
EVVSLSSLPSSSSPSSSSSSSSSSSSRRRSSSSSSSSSSSRNDMPSLPSS
RMRIDTSAVGGKVPLGSVVGDYAWQQEEGLEKMVFGFDTFEVGR* back to topmRNA from alignment at chr30:302278..304916- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO30G00830.2 ID=NO30G00830.2|Name=NO30G00830.2|organism=Nannochloropsis oceanica|type=mRNA|length=2639bp|location=Sequence derived from alignment at chr30:302278..304916- (Nannochloropsis oceanica)
GGTGTGACTGTAGATGAGAAGGATGGAGTAGTAGGGGATGTGGGGGAAAG
AGGAGTGAGATGAGGGTGGACGTGGTGCTGGTTCTACTGGTGGCCGGCGG
GTGGACAAGAGGAATGAAGTCAAAGGCCACGCAGCACGCTTGAATAGAGT
AAGAGAGAGGCACGGATTGCTGTATTGTGTGTGTTGATGTATGTGTGTGT
TTGTGCGCGTGTGCGCGTGTGTAGGCAGGGTGTAGCATGGGCGTGTACGG
GTGTATCGTGTCGTGTAGGCAATGGTGGTGGAATCATCATAGGACGCGAA
GCAAGCTAAGGCTCGGCTTTCACCACGTCTCTGCCGAGCCCGGTGCGAAG
CATGGTCGCAGAGTATCGAAGCCTGATATAAGGTCTATAAGCTTGCGAGT
GGATGCGGGTATGGTTGGGCCGGTGAAAGAAGTGGCACAAAGGCCGTTCA
CGCAACATCACACCCGAAGATCACTCTGCCGTGCATGTTGGGGAGAGGTG
TCGTGTCGACGTTGACCAAAGCAACGGCCGCGCAGCCTCCCGGAGTAATC
GATGTCAAGGGCGCACGCAAGCAACACCAGCACAATAAGACAGGCTGATA
AGGGGCCGTACAGAGAAAAGATGCCCAAGAAAAGGCCTTCTAGTGCTTTT
TGGCTCGTGCGTCGCCTTTCTGCCGACAAGGCGTGGAGTGTCGAGACCCG
CCGACGCATGCGTCTCCCTTAGCCTGTGTTCGCTTCCCTGTCACCCATTC
TCAAAACGCCACAGCCCCGACGCAAGACGTGGGGCCATGGCAGGAGACAT
GGTGAGAACAGAGAGGGCAAAGATTGCAACTCATGCATATGGAAAATTGT
AGACGTGTGAATAGAGCAGGGACGGAAGGACTGGATGCGTCGACGCGGAG
GCAGCAAAGGCGAGAGCAGCGAGCCCACAGGATTATGACCGAATGGGCAT
GCGAAATGTTGGGGGTTGAGAGAAGGAGGTCAAAGAAGGTGCGTGAAATA
CAGTTATCTCCTTGGATTCCTTGTCCATAGCTCTGGCGTTGCTTCACTCG
GTATGTGGTGTGGTTGCTAGCTTCGCCCTCTCACTTCTCACCCTCCCCTT
TCCACACGAACAGCCTCCCCTCCCCCAAGACAAAGCAAGAAACGCCCTGG
CCTCCAAGCTCTCGATCTTCCCACACACCAAAAAGCATGCCGCCAACAAG
ACTACCAACCCTTCCCCTCCTCGCCCTTCTTCTCTTCCTCCTTCCAGCCC
TCCCCATCACCCAAGCCTTCTCCACTCCTTCGCTTTTCCTTTCTCGAGCT
GTCCGGGGAGGAGCCATTGCTTCCTCTTCCTCTTCTTCTTCGTCCCTGTC
GCCGGCGGGAGCAGTGGAGTTGCTAATCGACGCCGCATTCAACCGAAAAG
GTACAAAGGAAAGGGAGGACGGGAGAAATGGAGGGATTGAGGGAGGGAGA
GAGGGAGGAGGAAATTGACATCCTTACACATTGGCATTTGTTTCTCGTTT
ACTGTTGAAAGTACTCACAGACACACGCAACCATTCGACCCCTCCACCCC
TTCCCTTCTCTTCTGTTCTCGCTTTTGACAGTCACGAAAGACCAAGTTGT
CGCCGCCCTCGATCTTCTTGAACAGCATCGCCGATCTTCCTACTTTACCA
CCACCCCTACCACTGCGCCCGACTTTTTCTCCACCTTCTTTCCTCCCTTC
CCCTCCTTGAGTACCCTTCCGCACTCAGTGCTTCCCTCTCTCCTTCGCAA
GAGTGGGAAGTGGGAGATTGTGTTTTCGTCCATCCTCAGGAATGGTTACA
TGCCCTCCTTTGTCTGTGAAGTAGTCTCCCTCTCCTCCCTCCCCTCCTCC
TCCTCTCCCTCCTCCTCCTCCTCCTCCTCCTCGAGCAGCAGCAGTAGGAG
GAGGAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTCGCAATGACATGC
CGTCCCTCCCTTCCTCCCGGATGCGGATAGATACGTCCGCGGTTGGAGGA
AAAGTACCGTTGGGAAGCGTTGTGGGAGACTACGCGTGGCAGCAAGAAGA
GGGGCTGGAGAAAATGGTATTCGGATTTGATACATTCGAGGTAGGTAGGT
AGGGAGGGAGTGAGAGAGGGGGGAATGAGAGGGAGGGCTAGGTTTGTATT
TTGTGCTACAATATTTTTTCACCACTTGCTGTCTCTGTGTCCCATCTCTC
CTTCCCTCCCTTCATCTCTCCCTCTTTCCCTCCCTTCGTCCCTCCCTCCT
TCAGCTAGGTCCACTTTCCCTGCCCATGAAGAAGAAGCTCAAGACCTACT
CCTTCTTTTGGGTGGACGACAAGGTAATCCCACCCTCTTTTTTTCTCTTC
CTCCTTCCTTCCCTTTCTTTTTTTCCCCCCTCCACTAGCCCCTCTCATCG
ATACCTCTGTCCCCGCCCACCTTCTCTCCTCCCCTCCCTCCCTCGTTTCT
ACAGATTGCCTGTGCAAGGAGCAGTTCTGGTGGACTCACCCTGATGCGGG
CAAGTGAACTATCCCTGGACCAAAGAAATGCTATAAATAAATAAAAAGTA
AACCAAGAAATGTAAAGGCGGAGAGGCACTAAGTACCAAAAGTCTTCAAG
CTCATCAAATTAGGAAATTTACGCTCTTGAAAGACCGAT back to topCoding sequence (CDS) from alignment at chr30:302278..304916- >NO30G00830.2 ID=NO30G00830.2|Name=NO30G00830.2|organism=Nannochloropsis oceanica|type=CDS|length=735bp|location=Sequence derived from alignment at chr30:302278..304916- (Nannochloropsis oceanica)
ATGCCGCCAACAAGACTACCAACCCTTCCCCTCCTCGCCCTTCTTCTCTT
CCTCCTTCCAGCCCTCCCCATCACCCAAGCCTTCTCCACTCCTTCGCTTT
TCCTTTCTCGAGCTGTCCGGGGAGGAGCCATTGCTTCCTCTTCCTCTTCT
TCTTCGTCCCTGTCGCCGGCGGGAGCAGTGGAGTTGCTAATCGACGCCGC
ATTCAACCGAAAAGTCACGAAAGACCAAGTTGTCGCCGCCCTCGATCTTC
TTGAACAGCATCGCCGATCTTCCTACTTTACCACCACCCCTACCACTGCG
CCCGACTTTTTCTCCACCTTCTTTCCTCCCTTCCCCTCCTTGAGTACCCT
TCCGCACTCAGTGCTTCCCTCTCTCCTTCGCAAGAGTGGGAAGTGGGAGA
TTGTGTTTTCGTCCATCCTCAGGAATGGTTACATGCCCTCCTTTGTCTGT
GAAGTAGTCTCCCTCTCCTCCCTCCCCTCCTCCTCCTCTCCCTCCTCCTC
CTCCTCCTCCTCCTCGAGCAGCAGCAGTAGGAGGAGGAGTAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGTCGCAATGACATGCCGTCCCTCCCTTCCTCC
CGGATGCGGATAGATACGTCCGCGGTTGGAGGAAAAGTACCGTTGGGAAG
CGTTGTGGGAGACTACGCGTGGCAGCAAGAAGAGGGGCTGGAGAAAATGG
TATTCGGATTTGATACATTCGAGGTAGGTAGGTAG back to top
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