NO30G00830, NO30G00830 (gene) Nannochloropsis oceanica

Overview
NameNO30G00830
Unique NameNO30G00830
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2639
Alignment locationchr30:302278..304916 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:302278..304916 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO30G00830 vs. NCBI_GenBank
Match: EWM20718.1 (hypothetical protein Naga_100385g3 [Nannochloropsis gaditana])

HSP 1 Score: 143.7 bits (361), Expect = 9.300e-31
Identity = 111/217 (51.15%), Postives = 128/217 (58.99%), Query Frame = 0 
Query:   62 LLIDAAFNRKVTKDQVVAALDXXXXXXXXXXXXXXXXXXXXFFSTFFPPFPSLSTLPHSVLPSLLRKSGKWEIVFSSILRNGYMPSFVCEVVSLSSLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMPSLPSSRMRIDTSAVGGKVPLGSVVGDYAWQQEEGLEKMVFGFDTFELGPLSLPMKKKLKTYSFFWVDDKIACARSSSGGLTLM 279
            +L DAA +RKV K QV+AAL+                      ST F P                 K G+WEIVFSS+L  GYMP+ VCEVVS+S+L XXXXXXXXXXXXXXXXX                         +RIDTSA GG +PLG VVGDY W   EG  KM FGF+ FELGPLSL + KK+K Y+FFWVDD+IACARSS+GGLTLM
Sbjct:  101 ILRDAARHRKVDKSQVIAALE----VLEGSKLPSPSSKKPGILSTLF-PXXXXXXXXXXXXXXXXDKGGEWEIVFSSLLGAGYMPALVCEVVSVSALSXXXXXXXXXXXXXXXXXRP-----------------------IRIDTSAAGGLLPLGCVVGDYVW---EG-NKMTFGFNRFELGPLSLQLGKKMKFYTFFWVDDQIACARSSTGGLTLM 285
The following BLAST results are available for this feature:
BLAST of NO30G00830 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20718.19.300e-3151.15hypothetical protein Naga_100385g3 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR051ncniR051Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO30G00830.3NO30G00830.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO30G00830.2NO30G00830.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO30G00830.1NO30G00830.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO30G00830.3NO30G00830.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO30G00830.2NO30G00830.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO30G00830.1NO30G00830.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO30G00830 ID=NO30G00830|Name=NO30G00830|organism=Nannochloropsis oceanica|type=gene|length=2639bp
GGTGTGACTGTAGATGAGAAGGATGGAGTAGTAGGGGATGTGGGGGAAAG
AGGAGTGAGATGAGGGTGGACGTGGTGCTGGTTCTACTGGTGGCCGGCGG
GTGGACAAGAGGAATGAAGTCAAAGGCCACGCAGCACGCTTGAATAGAGT
AAGAGAGAGGCACGGATTGCTGTATTGTGTGTGTTGATGTATGTGTGTGT
TTGTGCGCGTGTGCGCGTGTGTAGGCAGGGTGTAGCATGGGCGTGTACGG
GTGTATCGTGTCGTGTAGGCAATGGTGGTGGAATCATCATAGGACGCGAA
GCAAGCTAAGGCTCGGCTTTCACCACGTCTCTGCCGAGCCCGGTGCGAAG
CATGGTCGCAGAGTATCGAAGCCTGATATAAGGTCTATAAGCTTGCGAGT
GGATGCGGGTATGGTTGGGCCGGTGAAAGAAGTGGCACAAAGGCCGTTCA
CGCAACATCACACCCGAAGATCACTCTGCCGTGCATGTTGGGGAGAGGTG
TCGTGTCGACGTTGACCAAAGCAACGGCCGCGCAGCCTCCCGGAGTAATC
GATGTCAAGGGCGCACGCAAGCAACACCAGCACAATAAGACAGGCTGATA
AGGGGCCGTACAGAGAAAAGATGCCCAAGAAAAGGCCTTCTAGTGCTTTT
TGGCTCGTGCGTCGCCTTTCTGCCGACAAGGCGTGGAGTGTCGAGACCCG
CCGACGCATGCGTCTCCCTTAGCCTGTGTTCGCTTCCCTGTCACCCATTC
TCAAAACGCCACAGCCCCGACGCAAGACGTGGGGCCATGGCAGGAGACAT
GGTGAGAACAGAGAGGGCAAAGATTGCAACTCATGCATATGGAAAATTGT
AGACGTGTGAATAGAGCAGGGACGGAAGGACTGGATGCGTCGACGCGGAG
GCAGCAAAGGCGAGAGCAGCGAGCCCACAGGATTATGACCGAATGGGCAT
GCGAAATGTTGGGGGTTGAGAGAAGGAGGTCAAAGAAGgtgcgtgaaata
cagttatctccttggattccttgtccatagctctggcgttgcttcactcg
gtatgtggtgtggttgctagcttcgccctctcacttctcaccctcccctt
tccacacgaacagCCTCCCCTCCCCCAAGACAAAGCAAGAAACGCCCTGG
CCTCCAAGCTCTCGATCTTCCCACACACCAAAAAGCATGCCGCCAACAAG
ACTACCAACCCTTCCCCTCCTCGCCCTTCTTCTCTTCCTCCTTCCAGCCC
TCCCCATCACCCAAGCCTTCTCCACTCCTTCGCTTTTCCTTTCTCGAGCT
GTCCGGGGAGGAGCCATTGCTTCCTCTTCCTCTTCTTCTTCGTCCCTGTC
GCCGGCGGGAGCAGTGGAGTTGCTAATCGACGCCGCATTCAACCGAAAAG
gtacaaaggaaagggaggacgggagaaatggagggattgagggagggaga
gagggaggaggaaattgacatccttacacattggcatttgtttctcgttt
actgttgaaagtactcacagacacacgcaaccattcgacccctccacccc
ttcccttctcttctgttctcgcttttgacagTCACGAAAGACCAAGTTGT
CGCCGCCCTCGATCTTCTTGAACAGCATCGCCGATCTTCCTACTTTACCA
CCACCCCTACCACTGCGCCCGACTTTTTCTCCACCTTCTTTCCTCCCTTC
CCCTCCTTGAGTACCCTTCCGCACTCAGTGCTTCCCTCTCTCCTTCGCAA
GAGTGGGAAGTGGGAGATTGTGTTTTCGTCCATCCTCAGGAATGGTTACA
TGCCCTCCTTTGTCTGTGAAGTAGTCTCCCTCTCCTCCCTCCCCTCCTCC
TCCTCTCCCTCCTCCTCCTCCTCCTCCTCCTCGAGCAGCAGCAGTAGGAG
GAGGAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTCGCAATGACATGC
CGTCCCTCCCTTCCTCCCGGATGCGGATAGATACGTCCGCGGTTGGAGGA
AAAGTACCGTTGGGAAGCGTTGTGGGAGACTACGCGTGGCAGCAAGAAGA
GGGGCTGGAGAAAATGGTATTCGGATTTGATACATTCGAGGTAGGTAGGT
AGGGAGGGAGTGAGAGAGGGGGGAATGAGAGGGAGGGCTAGGTTTGTATT
TTGTGCTACAATATTTTTTCACCACTTGCTGTCTCTGTGTCCCATCTCTC
CTTCCCTCCCTTCATCTCTCCCTCTTTCCCTCCCTTCGTCCCTCCCTCCT
TCAGCTAGGTCCACTTTCCCTGCCCATGAAGAAGAAGCTCAAGACCTACT
CCTTCTTTTGGGTGGACGACAAGGTAATCCCACCCTCTTTTTTTCTCTTC
CTCCTTCCTTCCCTTTCTTTTTTTCCCCCCTCCACTAGCCCCTCTCATCG
ATACCTCTGTCCCCGCCCACCTTCTCTCCTCCCCTCCCTCCCTCGTTTCT
ACAGATTGCCTGTGCAAGGAGCAGTTCTGGTGGACTCACCCTGATGCGGG
CAAGTGAACTATCCCTGGACCAAAGAAATGCTATAAATAAATAAAAAGTA
AACCAAGAAATGTAAAGGCGGAGAGGCACTAAGTACCAAAAGTCTTCAAG
CTCATCAAATTAGGAAATTTACGCTCTTGAAAGACCGAT
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protein sequence of NO30G00830.3

>NO30G00830.3-protein ID=NO30G00830.3-protein|Name=NO30G00830.3|organism=Nannochloropsis oceanica|type=polypeptide|length=245bp
MPPTRLPTLPLLALLLFLLPALPITQAFSTPSLFLSRAVRGGAIASSSSS
SSSLSPAGAVELLIDAAFNRKVTKDQVVAALDLLEQHRRSSYFTTTPTTA
PDFFSTFFPPFPSLSTLPHSVLPSLLRKSGKWEIVFSSILRNGYMPSFVC
EVVSLSSLPSSSSPSSSSSSSSSSSSRRRSSSSSSSSSSSRNDMPSLPSS
RMRIDTSAVGGKVPLGSVVGDYAWQQEEGLEKMVFGFDTFEVGR*
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protein sequence of NO30G00830.2

>NO30G00830.2-protein ID=NO30G00830.2-protein|Name=NO30G00830.2|organism=Nannochloropsis oceanica|type=polypeptide|length=245bp
MPPTRLPTLPLLALLLFLLPALPITQAFSTPSLFLSRAVRGGAIASSSSS
SSSLSPAGAVELLIDAAFNRKVTKDQVVAALDLLEQHRRSSYFTTTPTTA
PDFFSTFFPPFPSLSTLPHSVLPSLLRKSGKWEIVFSSILRNGYMPSFVC
EVVSLSSLPSSSSPSSSSSSSSSSSSRRRSSSSSSSSSSSRNDMPSLPSS
RMRIDTSAVGGKVPLGSVVGDYAWQQEEGLEKMVFGFDTFEVGR*
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protein sequence of NO30G00830.1

>NO30G00830.1-protein ID=NO30G00830.1-protein|Name=NO30G00830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=294bp
MPPTRLPTLPLLALLLFLLPALPITQAFSTPSLFLSRAVRGGAIASSSSS
SSSLSPAGAVELLIDAAFNRKVTKDQVVAALDLLEQHRRSSYFTTTPTTA
PDFFSTFFPPFPSLSTLPHSVLPSLLRKSGKWEIVFSSILRNGYMPSFVC
EVVSLSSLPSSSSPSSSSSSSSSSSSRRRSSSSSSSSSSSRNDMPSLPSS
RMRIDTSAVGGKVPLGSVVGDYAWQQEEGLEKMVFGFDTFELGPLSLPMK
KKLKTYSFFWVDDKIACARSSSGGLTLMRASELSLDQRNAINK*
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Synonyms
Publications