NO30G00550.1, NO30G00550.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO30G00550.1
Unique NameNO30G00550.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length939
Alignment locationchr30:213863..214801 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:213863..214801 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO30G00550.1 vs.
Match: XP_014003630.1 (PREDICTED: ankyrin repeat domain-containing protein 27-like isoform X3 [Salmo salar])

HSP 1 Score: 75.1 bits (183), Expect = 4.300e-10
Identity = 84/279 (30.11%), Postives = 120/279 (43.01%), Query Frame = 0 
Query:   27 VNDKNGGKFTPLCVAVSILSNLPLILWLIDEKGADVNVRTRTGYTPLQLARS---LDILAALLERGANPVLQNLLGQSALIHQAASGHVDNVARLLQDSRVQATVNLKTPFGWTALHHACSHIYETPATAIVHLLLQAGANPAPLGDEGKSSLSLLRQNRPSHHSTIALLEQAP----DAEKASLLVKARRLTVGASVSTSALARPYLQGRMTQRQSFPRVDLMPMRRKKKTDDHRKFSGMLGFLLGSQGGFNGEGMPRDVFRMVMDFVMPKWDPLRRG 299
            VN  +   FTPL VA   L     ++ L+   GA+VN R     TPL LA     + ++ +LLE  A    ++  G + LIH    GHVD    LLQ +   A+VNL    G TALH A    +     A+V LLLQAGA         +++L    + R  +   +  L++A     +AE   LL          SV   ALA  ++Q R+  +Q     D    RR+K      +   M             +G+PRD     ++   P+   LRRG
Sbjct:  734 VNSSSVDGFTPLHVAA--LHGHTALVSLLSRNGANVNARNSQSATPLHLASQNSHIQVVTSLLECNAKLNKKDRYGNTPLIHTCLRGHVDTATILLQSN---ASVNLSNNQGNTALHEAVKGGH----LALVELLLQAGALVHMRNKRQRTALDCAVETRGKNTEILRTLQKASGLSHNAEPIKLL----------SVPKGALAHSFVQ-RLKHQQ-----DNASGRRQKLAQSINRVQQM------------KKGLPRDTSVPSINSPTPERRKLRRG 975
The following BLAST results are available for this feature:
BLAST of NO30G00550.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_014003630.14.300e-1030.11PREDICTED: ankyrin repeat domain-containing protei... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO30G00550NO30G00550Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO30G00550.1NO30G00550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO30G00550.1.cds1NO30G00550.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO30G00550.1 ID=NO30G00550.1|Name=NO30G00550.1|organism=Nannochloropsis oceanica|type=mRNA|length=939bp
ATGGCGGACGACACGGCCAGCTTCCAAGATATGAGTGAGACGCAGCTCCG
GCAATGGGTGGAAGCCCACCCTGAACAAGTAAATGACAAGAACGGTGGAA
AATTCACTCCCTTATGCGTTGCTGTTTCAATCTTGAGCAACCTGCCACTG
ATTCTATGGTTGATCGATGAGAAAGGGGCGGACGTGAACGTGCGCACCAG
GACGGGCTACACGCCTCTCCAACTGGCCCGGTCTCTTGACATCCTCGCTG
CCTTGCTGGAGCGAGGAGCCAACCCTGTCCTGCAAAATTTACTCGGGCAA
TCCGCTCTCATCCACCAAGCAGCTTCTGGGCATGTCGATAATGTGGCACG
TCTACTGCAAGACTCCCGGGTCCAAGCCACAGTAAATCTTAAGACCCCTT
TTGGTTGGACAGCCCTCCACCACGCCTGTAGCCACATATACGAAACACCA
GCCACCGCTATCGTCCATCTTCTCCTCCAAGCAGGTGCCAATCCTGCCCC
CCTTGGCGATGAAGGGAAGTCCTCTTTGAGTTTGCTTCGACAGAATCGTC
CCTCCCACCACAGCACCATCGCCCTTCTTGAGCAAGCCCCTGACGCAGAA
AAGGCTTCCCTTCTTGTGAAAGCTCGACGCCTTACCGTCGGCGCCTCCGT
CTCCACTTCTGCCTTAGCACGTCCCTACCTGCAGGGTCGGATGACCCAAA
GACAGTCTTTCCCTCGGGTAGACCTAATGCCAATGCGCCGCAAGAAGAAG
ACCGATGATCATCGCAAGTTTAGTGGTATGCTGGGGTTTCTCTTGGGCAG
CCAGGGCGGATTTAATGGCGAGGGAATGCCGCGGGACGTATTTAGGATGG
TAATGGACTTTGTAATGCCAAAATGGGACCCGCTGAGACGTGGAATTGTG
GGAGAAGGGGGAGAGCTCTTGGACGTAAGGAGCCCGTGA
back to top

protein sequence of NO30G00550.1

>NO30G00550.1-protein ID=NO30G00550.1-protein|Name=NO30G00550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=313bp
MADDTASFQDMSETQLRQWVEAHPEQVNDKNGGKFTPLCVAVSILSNLPL
ILWLIDEKGADVNVRTRTGYTPLQLARSLDILAALLERGANPVLQNLLGQ
SALIHQAASGHVDNVARLLQDSRVQATVNLKTPFGWTALHHACSHIYETP
ATAIVHLLLQAGANPAPLGDEGKSSLSLLRQNRPSHHSTIALLEQAPDAE
KASLLVKARRLTVGASVSTSALARPYLQGRMTQRQSFPRVDLMPMRRKKK
TDDHRKFSGMLGFLLGSQGGFNGEGMPRDVFRMVMDFVMPKWDPLRRGIV
GEGGELLDVRSP*
back to top

mRNA from alignment at chr30:213863..214801-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO30G00550.1 ID=NO30G00550.1|Name=NO30G00550.1|organism=Nannochloropsis oceanica|type=mRNA|length=939bp|location=Sequence derived from alignment at chr30:213863..214801- (Nannochloropsis oceanica)
ATGGCGGACGACACGGCCAGCTTCCAAGATATGAGTGAGACGCAGCTCCG
GCAATGGGTGGAAGCCCACCCTGAACAAGTAAATGACAAGAACGGTGGAA
AATTCACTCCCTTATGCGTTGCTGTTTCAATCTTGAGCAACCTGCCACTG
ATTCTATGGTTGATCGATGAGAAAGGGGCGGACGTGAACGTGCGCACCAG
GACGGGCTACACGCCTCTCCAACTGGCCCGGTCTCTTGACATCCTCGCTG
CCTTGCTGGAGCGAGGAGCCAACCCTGTCCTGCAAAATTTACTCGGGCAA
TCCGCTCTCATCCACCAAGCAGCTTCTGGGCATGTCGATAATGTGGCACG
TCTACTGCAAGACTCCCGGGTCCAAGCCACAGTAAATCTTAAGACCCCTT
TTGGTTGGACAGCCCTCCACCACGCCTGTAGCCACATATACGAAACACCA
GCCACCGCTATCGTCCATCTTCTCCTCCAAGCAGGTGCCAATCCTGCCCC
CCTTGGCGATGAAGGGAAGTCCTCTTTGAGTTTGCTTCGACAGAATCGTC
CCTCCCACCACAGCACCATCGCCCTTCTTGAGCAAGCCCCTGACGCAGAA
AAGGCTTCCCTTCTTGTGAAAGCTCGACGCCTTACCGTCGGCGCCTCCGT
CTCCACTTCTGCCTTAGCACGTCCCTACCTGCAGGGTCGGATGACCCAAA
GACAGTCTTTCCCTCGGGTAGACCTAATGCCAATGCGCCGCAAGAAGAAG
ACCGATGATCATCGCAAGTTTAGTGGTATGCTGGGGTTTCTCTTGGGCAG
CCAGGGCGGATTTAATGGCGAGGGAATGCCGCGGGACGTATTTAGGATGG
TAATGGACTTTGTAATGCCAAAATGGGACCCGCTGAGACGTGGAATTGTG
GGAGAAGGGGGAGAGCTCTTGGACGTAAGGAGCCCGTGA
back to top

Coding sequence (CDS) from alignment at chr30:213863..214801-

>NO30G00550.1 ID=NO30G00550.1|Name=NO30G00550.1|organism=Nannochloropsis oceanica|type=CDS|length=939bp|location=Sequence derived from alignment at chr30:213863..214801- (Nannochloropsis oceanica)
ATGGCGGACGACACGGCCAGCTTCCAAGATATGAGTGAGACGCAGCTCCG
GCAATGGGTGGAAGCCCACCCTGAACAAGTAAATGACAAGAACGGTGGAA
AATTCACTCCCTTATGCGTTGCTGTTTCAATCTTGAGCAACCTGCCACTG
ATTCTATGGTTGATCGATGAGAAAGGGGCGGACGTGAACGTGCGCACCAG
GACGGGCTACACGCCTCTCCAACTGGCCCGGTCTCTTGACATCCTCGCTG
CCTTGCTGGAGCGAGGAGCCAACCCTGTCCTGCAAAATTTACTCGGGCAA
TCCGCTCTCATCCACCAAGCAGCTTCTGGGCATGTCGATAATGTGGCACG
TCTACTGCAAGACTCCCGGGTCCAAGCCACAGTAAATCTTAAGACCCCTT
TTGGTTGGACAGCCCTCCACCACGCCTGTAGCCACATATACGAAACACCA
GCCACCGCTATCGTCCATCTTCTCCTCCAAGCAGGTGCCAATCCTGCCCC
CCTTGGCGATGAAGGGAAGTCCTCTTTGAGTTTGCTTCGACAGAATCGTC
CCTCCCACCACAGCACCATCGCCCTTCTTGAGCAAGCCCCTGACGCAGAA
AAGGCTTCCCTTCTTGTGAAAGCTCGACGCCTTACCGTCGGCGCCTCCGT
CTCCACTTCTGCCTTAGCACGTCCCTACCTGCAGGGTCGGATGACCCAAA
GACAGTCTTTCCCTCGGGTAGACCTAATGCCAATGCGCCGCAAGAAGAAG
ACCGATGATCATCGCAAGTTTAGTGGTATGCTGGGGTTTCTCTTGGGCAG
CCAGGGCGGATTTAATGGCGAGGGAATGCCGCGGGACGTATTTAGGATGG
TAATGGACTTTGTAATGCCAAAATGGGACCCGCTGAGACGTGGAATTGTG
GGAGAAGGGGGAGAGCTCTTGGACGTAAGGAGCCCGTGA
back to top
Synonyms
Publications