NO30G00550, NO30G00550 (gene) Nannochloropsis oceanica

Overview
NameNO30G00550
Unique NameNO30G00550
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length939
Alignment locationchr30:213863..214801 -

Link to JBrowse

Properties
Property NameValue
DescriptionAnkyrin repeat protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:213863..214801 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036770Ankyrin_rpt-contain_sf
IPR020683Ankyrin_rpt-contain_dom
IPR002110Ankyrin_rpt
Homology
[Close]
BLAST of NO30G00550 vs. NCBI_GenBank
Match: WP_083484680.1 (ankyrin repeat domain-containing protein [Pediococcus stilesii] >KRN94208.1 ankyrin repeat family protein [Pediococcus stilesii])

HSP 1 Score: 65.9 bits (159), Expect = 2.600e-7
Identity = 58/177 (32.77%), Postives = 85/177 (48.02%), Query Frame = 0 
Query:   10 DMSETQLRQWVEAHPEQVNDKNGGKFTPLCVAVSILSNLPLILWLIDEKGADVNVRTR---TGYTPLQLARSLDILAALLER-GANPVLQNLLGQSALIHQAASGHVDNVARLLQDSRVQATVNLKTPFGWTALHHACS-HIYETPATAIVHLLLQAGANPAPLGDEGKSSLSLLRQ 182
            D +  Q +Q ++AHP Q++  N    TPL VA    +N   I  L+ + GADVN++     + Y          IL  +L+    NP L N  G +ALI  A  GH+DNV  LL+D  V   +N +   G+TAL  A +     +    IV LLL  GA      +  +++L   +Q
Sbjct:   57 DNNLEQTKQALKAHPTQLDRPNSKGETPLLVATH--NNNVQIAKLLIDHGADVNLQDHIQDSAYLYAAAQGRTQILDYILKHTEPNPKLYNRFGGTALIPAAEKGHLDNVRLLLKDGHVD--INHQNKSGYTALIEAVALRDGSSKYQQIVQLLLDYGAKTDLRDNRNQTALDYAKQ 229
[Close]
BLAST of NO30G00550 vs. NCBI_GenBank
Match: EOH90788.1 (hypothetical protein UAO_00967 [Enterococcus villorum ATCC 700913] >EOW77955.1 hypothetical protein I591_00810 [Enterococcus villorum ATCC 700913])

HSP 1 Score: 64.7 bits (156), Expect = 5.800e-7
Identity = 55/158 (34.81%), Postives = 83/158 (52.53%), Query Frame = 0 
Query:   27 VNDKNGGKFTPLCVAVSILSNLPLILWLIDEKGADVNVRTRTGYTPLQLARS---LDILAALLERG-ANPVLQNLLGQSALIHQAASGHVDNVARLLQDSRVQATVNLKTPFGWTALHHAC-----SHIYETPATAIVHLLLQAGANPAPLGDEGKSS 176
            +N++N    +PL VAV    N+  I  L+ + GAD+N++     +P   A +    +IL  +LE+   +  + N  G +ALI  A  GH+ NV  LL D RVQ  ++ +  FG+TAL  A      S +Y+     IVH LL  GAN     +EGK++
Sbjct:   31 INEQNEKGESPLLVAVH--HNMIEIAKLLIDHGADINLQDEIKDSPYLYAAAQGKTEILDYMLEKSEPDQTIVNRFGGNALIPAAEKGHLANVKLLLADGRVQ--IDHQNNFGYTALIEAVALRDGSKVYQ----EIVHELLAYGANKDLRDNEGKTA 180
[Close]
BLAST of NO30G00550 vs. NCBI_GenBank
Match: WP_025480636.1 (ankyrin repeat domain-containing protein [Enterococcus villorum])

HSP 1 Score: 64.7 bits (156), Expect = 5.800e-7
Identity = 55/158 (34.81%), Postives = 83/158 (52.53%), Query Frame = 0 
Query:   27 VNDKNGGKFTPLCVAVSILSNLPLILWLIDEKGADVNVRTRTGYTPLQLARS---LDILAALLERG-ANPVLQNLLGQSALIHQAASGHVDNVARLLQDSRVQATVNLKTPFGWTALHHAC-----SHIYETPATAIVHLLLQAGANPAPLGDEGKSS 176
            +N++N    +PL VAV    N+  I  L+ + GAD+N++     +P   A +    +IL  +LE+   +  + N  G +ALI  A  GH+ NV  LL D RVQ  ++ +  FG+TAL  A      S +Y+     IVH LL  GAN     +EGK++
Sbjct:   88 INEQNEKGESPLLVAVH--HNMIEIAKLLIDHGADINLQDEIKDSPYLYAAAQGKTEILDYMLEKSEPDQTIVNRFGGNALIPAAEKGHLANVKLLLADGRVQ--IDHQNNFGYTALIEAVALRDGSKVYQ----EIVHELLAYGANKDLRDNEGKTA 237
[Close]
BLAST of NO30G00550 vs. NCBI_GenBank
Match: XP_024699150.1 (ankyrin [Aspergillus steynii IBT 23096] >PLB43848.1 ankyrin [Aspergillus steynii IBT 23096])

HSP 1 Score: 64.3 bits (155), Expect = 7.600e-7
Identity = 47/164 (28.66%), Postives = 87/164 (53.05%), Query Frame = 0 
Query:   20 VEAHPEQVNDKNGGKFTPLCVAVSILSNLPLILWLIDEKGADVNVRTRTGYTPLQLARSLD------ILAALLERGANPVLQNLLGQSALIHQAASGHVDNVARLLQDSRVQATVNLKTPFGWTALHHACSHIYETPATAIVHLLLQAGANPAPLGD-EGKSSL 177
            V A+P+  N K+  +  P+  AV+  ++LP++  L+  K  D +V   +G+TPL +A SL       I+  LL +GA+   ++  GQ+AL    +  ++  V  L+++   + +  +K   G   LH A +      +TAI+++LL+ G +P    D +G ++L
Sbjct:   27 VSANPKLANTKDDDERLPIHWAVA-YNHLPIVELLVSSKNFDPDVEDGSGWTPLMIASSLKNAEGDAIIELLLRKGADVTAKSNSGQNALHFATSKANISTVRTLIEN---KCSARVKDKRGQLPLHRAAA----IGSTAIINILLKDGKSPVNATDMDGMTAL 182
[Close]
BLAST of NO30G00550 vs. NCBI_GenBank
Match: XP_003066983.1 (ankyrin repeat containing protein [Coccidioides posadasii C735 delta SOWgp] >EER24838.1 ankyrin repeat containing protein [Coccidioides posadasii C735 delta SOWgp])

HSP 1 Score: 63.9 bits (154), Expect = 1.000e-6
Identity = 54/157 (34.39%), Postives = 83/157 (52.87%), Query Frame = 0 
Query:   27 VNDKNGGKFTPLCVAVSILSN--LPLILWLIDEKGADVNVRTRTGYTPLQLARS---LDILAALLERGANPVLQNLLGQSALIHQAASGHVDNVARLLQDSRVQATVNLKTPFGWTALHHACSHIYETPATAIVHLLLQAGANPAPLGDEGKSSLSL 179
            V D +G  +TPL +A S+  N   P+I  L+ +KGADVN+++ TG   +  A S    DI+  L+    +  +++  GQ AL   AA G V  +  LL++ R  + +N     G TALHHA S  +   A     +LL+AGA      +EG+ ++ L
Sbjct:   67 VTDSSG--WTPLMIAASLKDNEGRPMIELLL-QKGADVNLKSATGQNAIHFAASKSNTDIVRTLISNECSARVRDNRGQLALHRAAAIGSVPILNILLREGR--SPLNATDVDGLTALHHAISEGHGEAAL----VLLRAGAEVDKRDNEGRLAIDL 214
[Close]
BLAST of NO30G00550 vs. NCBI_GenBank
Match: EFW21181.1 (proteasome regulatory particle subunit [Coccidioides posadasii str. Silveira])

HSP 1 Score: 63.9 bits (154), Expect = 1.000e-6
Identity = 54/157 (34.39%), Postives = 83/157 (52.87%), Query Frame = 0 
Query:   27 VNDKNGGKFTPLCVAVSILSN--LPLILWLIDEKGADVNVRTRTGYTPLQLARS---LDILAALLERGANPVLQNLLGQSALIHQAASGHVDNVARLLQDSRVQATVNLKTPFGWTALHHACSHIYETPATAIVHLLLQAGANPAPLGDEGKSSLSL 179
            V D +G  +TPL +A S+  N   P+I  L+ +KGADVN+++ TG   +  A S    DI+  L+    +  +++  GQ AL   AA G V  +  LL++ R  + +N     G TALHHA S  +   A     +LL+AGA      +EG+ ++ L
Sbjct:   70 VTDSSG--WTPLMIAASLKDNEGRPMIELLL-QKGADVNLKSATGQNAIHFAASKSNTDIVRTLISNECSARVRDNRGQLALHRAAAIGSVPILNILLREGR--SPLNATDVDGLTALHHAISEGHGEAAL----VLLRAGAEVDKRDNEGRLAIDL 217
The following BLAST results are available for this feature:
BLAST of NO30G00550 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 6
Match NameE-valueIdentityDescription
WP_083484680.12.600e-732.77ankyrin repeat domain-containing protein [Pediococ... [more]
EOH90788.15.800e-734.81hypothetical protein UAO_00967 [Enterococcus villo... [more]
WP_025480636.15.800e-734.81ankyrin repeat domain-containing protein [Enteroco... [more]
XP_024699150.17.600e-728.66ankyrin [Aspergillus steynii IBT 23096] >PLB43848.... [more]
XP_003066983.11.000e-634.39ankyrin repeat containing protein [Coccidioides po... [more]
EFW21181.11.000e-634.39proteasome regulatory particle subunit [Coccidioid... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR051ncniR051Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR102ngnoR102Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO30G00550.1NO30G00550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605901gene_9263Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO30G00550.1NO30G00550.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO30G00550 ID=NO30G00550|Name=NO30G00550|organism=Nannochloropsis oceanica|type=gene|length=939bp
ATGGCGGACGACACGGCCAGCTTCCAAGATATGAGTGAGACGCAGCTCCG
GCAATGGGTGGAAGCCCACCCTGAACAAGTAAATGACAAGAACGGTGGAA
AATTCACTCCCTTATGCGTTGCTGTTTCAATCTTGAGCAACCTGCCACTG
ATTCTATGGTTGATCGATGAGAAAGGGGCGGACGTGAACGTGCGCACCAG
GACGGGCTACACGCCTCTCCAACTGGCCCGGTCTCTTGACATCCTCGCTG
CCTTGCTGGAGCGAGGAGCCAACCCTGTCCTGCAAAATTTACTCGGGCAA
TCCGCTCTCATCCACCAAGCAGCTTCTGGGCATGTCGATAATGTGGCACG
TCTACTGCAAGACTCCCGGGTCCAAGCCACAGTAAATCTTAAGACCCCTT
TTGGTTGGACAGCCCTCCACCACGCCTGTAGCCACATATACGAAACACCA
GCCACCGCTATCGTCCATCTTCTCCTCCAAGCAGGTGCCAATCCTGCCCC
CCTTGGCGATGAAGGGAAGTCCTCTTTGAGTTTGCTTCGACAGAATCGTC
CCTCCCACCACAGCACCATCGCCCTTCTTGAGCAAGCCCCTGACGCAGAA
AAGGCTTCCCTTCTTGTGAAAGCTCGACGCCTTACCGTCGGCGCCTCCGT
CTCCACTTCTGCCTTAGCACGTCCCTACCTGCAGGGTCGGATGACCCAAA
GACAGTCTTTCCCTCGGGTAGACCTAATGCCAATGCGCCGCAAGAAGAAG
ACCGATGATCATCGCAAGTTTAGTGGTATGCTGGGGTTTCTCTTGGGCAG
CCAGGGCGGATTTAATGGCGAGGGAATGCCGCGGGACGTATTTAGGATGG
TAATGGACTTTGTAATGCCAAAATGGGACCCGCTGAGACGTGGAATTGTG
GGAGAAGGGGGAGAGCTCTTGGACGTAAGGAGCCCGTGA
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protein sequence of NO30G00550.1

>NO30G00550.1-protein ID=NO30G00550.1-protein|Name=NO30G00550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=313bp
MADDTASFQDMSETQLRQWVEAHPEQVNDKNGGKFTPLCVAVSILSNLPL
ILWLIDEKGADVNVRTRTGYTPLQLARSLDILAALLERGANPVLQNLLGQ
SALIHQAASGHVDNVARLLQDSRVQATVNLKTPFGWTALHHACSHIYETP
ATAIVHLLLQAGANPAPLGDEGKSSLSLLRQNRPSHHSTIALLEQAPDAE
KASLLVKARRLTVGASVSTSALARPYLQGRMTQRQSFPRVDLMPMRRKKK
TDDHRKFSGMLGFLLGSQGGFNGEGMPRDVFRMVMDFVMPKWDPLRRGIV
GEGGELLDVRSP*
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Synonyms
Publications