NO30G00440.1, NO30G00440.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO30G00440.1
Unique Name	NO30G00440.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2165
Alignment location	chr30:182253..184417 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr30	genome	chr30:182253..184417 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO30G00440.1 vs.

BLAST of NO30G00440.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO30G00440	NO30G00440	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO30G00440.1	NO30G00440.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO30G00440.1.cds1	NO30G00440.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr30:182253..184417-
coding sequence from alignment at chr30:182253..184417-

mRNA sequence

>NO30G00440.1 ID=NO30G00440.1|Name=NO30G00440.1|organism=Nannochloropsis oceanica|type=mRNA|length=2165bp
GGTCTCAGTGAGTCTCTGTGGTCCTCGGTGAGTCTCTTATGGCCTTTTAC
CAGTCCCTTGATGCGATTGTGTGTTTATCATGAGTTTACGATCCTGAGCA
AGCCGGCTTTGGAGCTGTTCTTTCTTCCGAACGGCGGGAGGAGAGGCACA
TGCATACCTGACTTCCGCATGGAGGAGGGCAAACTGTCTACAGGACAATT
CCTTGCGTTGCCCAGTCGCGTGGAGACATCGCATACCCCTTTTACAAATG
TCTGTGGGCTTGGTTGCTGCAAAGGCTGCTTGGCCAAGTTTATCGCATCT
GCTGACGCGCGTCTTCCGGGCCTTTGGCTTTTTCTTCTTGGATGCTTCCA
TCACTGTCAGTATCACAGCCAGAGCTCGCACATGTACTCACGACTCACAT
TCACTTTTTCACCCTGACCTTGTATAGGTGTCTGCAGAGTGCTTTGTCTC
ATCCTCTGCCTTGTTTGTGCCTGGTCTCATCGGTCACAGGCAAAGTTTTT
CCTTGAGTGCAGCTCTGCTGCCCCAGACTTCAATACCCCCAACCCAGCCA
TAGCCAATATCAGGTGCCTCTAGGAGGGCCAGAACTACCCCACGCCCGGC
AATCCTGCCATAATACTACGCCCCTAAACTGCTCACATACAATCGAGTGC
CTTAGGTAGCTTCGACCGGCGTCAAAAATGCGCCGGTCCTTGCCGGAAGG
CGTAGAAGACGTGCAAGATGCCGCTGCCTCCTCCTCGGATCCTGATGCAG
CCGCCCGTGGGGTGGTGCCGGTGAACAACGTGACGCTCATGATCTCAAGA
CGGGCTGGACGCTTGAACTCGTTGTCAGACGATGAAGACGATGACAATGA
GGACCAGTTGACGCTGGAGGAGGAGCAAGCCACGGCGGCAGCAGCAGCAG
CAGCAGCAACAGGAGGAGGACCAACAGCAGCAACAGCAGCAGCAGCTGGA
GTCAGGACAGCGGTGGAAGGATCTAATGAGAGGGTAGAAAGTAGCGTGGA
TCCAACCAATAGCAGCAGGAGTGCAACCTCGCCAGGAACCTCATCGTCCT
CATCACCCTGGCCCGCACCTTCCTCATCACCGGCGGCGGGAGGGGGGCAA
GACGGGTTGTTAAGTTTGTTTGGACAGGTCTTACGGAGGCCTCTCTGGAC
TGCCCCCACTTCAGCGTTTGCAGTACCTCCTCCGGGTGCTGCTGCATTTA
GGGAGGAAGCCAAAGAGGACGAGCACGAGGGCATGGTGATCATCCCGCTG
GGGGGATCTGCTACCGCGTCAGCGGTGGCAACAACGGCGGCAGCAGCTGC
AGCAGAAGGAGTGTCAACGACGGCTGATGCGGCATCAGGGGAAGGAAGGC
GGCATTTGTTTGCGTGGATATGTTCTCAATGCCTCCGTCCAGGTGGACCC
GGGGCTTGGAGGAGCGCGCACTCAGCCGCCGCTGCGACTGGCGCAGGCGG
TGCTGCCTCCAGGCTGCCCCACCGCGGGGGCGAGGACGAGGATGAGGACG
AGGACGAGGCGGCAGACACCGACACAGGCGCCTCCCCGCACCCAGTCGCT
CCCCCCTCCTCTTCCTCCTCCTCGACCTCCTACTCCCCATCGGTCCTGGC
GGCCGCCTGCGCCACGGCCGTCCGCCGGCATCACCTCCTCATCCTCTGGT
CGTTTGGAGGCCTGATGCTCCTGCGAATGGCCCTGGTGGCGTTCCAACGC
CGCGACAGCAAGCTACTCGTATTCACCTCCCTGGTCCTGGCCCTGGCCGT
CTACATCTGGTGGACCAGGAGGGTCAGGCAAGCCCGCCTGGAGGCCCTGC
GCGAGGCGGCGATGCACAGCGAGCACGTGGCCATGATGCAGCACATCGCC
AGCGCCAGGGAGGGGGGGAGGGGGGGAAGGAGGGGGGGCTTGGAGTCGGT
CGACTTGGAGGAGTTGCAGAGCATCATGTTGGAGGCGCGGAGGCAAGGGG
AGCTCCAGGGAGGGCTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGTGGG
CTGTCGCCTCACAGTAAGGCCGCCCTGGTCAGATTTTCATTTCGATCCAA
CTCCAGCTCCAGTGGCTACTTCGGGGCGGAGGGAGGTCGGGGAGGAGAGG
AGGAGGAAGCAGAGGGGGAAGGGAAGGAAAGTGGATGGCAGGGGGGGGGA
GCGGTGTGTCCCTAG

protein sequence of NO30G00440.1

>NO30G00440.1-protein ID=NO30G00440.1-protein|Name=NO30G00440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=496bp
MRRSLPEGVEDVQDAAASSSDPDAAARGVVPVNNVTLMISRRAGRLNSLS
DDEDDDNEDQLTLEEEQATAAAAAAAATGGGPTAATAAAAGVRTAVEGSN
ERVESSVDPTNSSRSATSPGTSSSSSPWPAPSSSPAAGGGQDGLLSLFGQ
VLRRPLWTAPTSAFAVPPPGAAAFREEAKEDEHEGMVIIPLGGSATASAV
ATTAAAAAAEGVSTTADAASGEGRRHLFAWICSQCLRPGGPGAWRSAHSA
AAATGAGGAASRLPHRGGEDEDEDEDEAADTDTGASPHPVAPPSSSSSST
SYSPSVLAAACATAVRRHHLLILWSFGGLMLLRMALVAFQRRDSKLLVFT
SLVLALAVYIWWTRRVRQARLEALREAAMHSEHVAMMQHIASAREGGRGG
RRGGLESVDLEELQSIMLEARRQGELQGGLQQQQQQQQQRGLSPHSKAAL
VRFSFRSNSSSSGYFGAEGGRGGEEEEAEGEGKESGWQGGGAVCP*

mRNA from alignment at chr30:182253..184417-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO30G00440.1 ID=NO30G00440.1|Name=NO30G00440.1|organism=Nannochloropsis oceanica|type=mRNA|length=2165bp|location=Sequence derived from alignment at chr30:182253..184417- (Nannochloropsis oceanica)
GGTCTCAGTGAGTCTCTGTGGTCCTCGGTGAGTCTCTTATGGCCTTTTAC
CAGTCCCTTGATGCGATTGTGTGTTTATCATGAGTTTACGATCCTGAGCA
AGCCGGCTTTGGAGCTGTTCTTTCTTCCGAACGGCGGGAGGAGAGGCACA
TGCATACCTGACTTCCGCATGGAGGAGGGCAAACTGTCTACAGGACAATT
CCTTGCGTTGCCCAGTCGCGTGGAGACATCGCATACCCCTTTTACAAATG
TCTGTGGGCTTGGTTGCTGCAAAGGCTGCTTGGCCAAGTTTATCGCATCT
GCTGACGCGCGTCTTCCGGGCCTTTGGCTTTTTCTTCTTGGATGCTTCCA
TCACTGTCAGTATCACAGCCAGAGCTCGCACATGTACTCACGACTCACAT
TCACTTTTTCACCCTGACCTTGTATAGGTGTCTGCAGAGTGCTTTGTCTC
ATCCTCTGCCTTGTTTGTGCCTGGTCTCATCGGTCACAGGCAAAGTTTTT
CCTTGAGTGCAGCTCTGCTGCCCCAGACTTCAATACCCCCAACCCAGCCA
TAGCCAATATCAGGTGCCTCTAGGAGGGCCAGAACTACCCCACGCCCGGC
AATCCTGCCATAATACTACGCCCCTAAACTGCTCACATACAATCGAGTGC
CTTAGGTAGCTTCGACCGGCGTCAAAAATGCGCCGGTCCTTGCCGGAAGG
CGTAGAAGACGTGCAAGATGCCGCTGCCTCCTCCTCGGATCCTGATGCAG
CCGCCCGTGGGGTGGTGCCGGTGAACAACGTGACGCTCATGATCTCAAGA
CGGGCTGGACGCTTGAACTCGTTGTCAGACGATGAAGACGATGACAATGA
GGACCAGTTGACGCTGGAGGAGGAGCAAGCCACGGCGGCAGCAGCAGCAG
CAGCAGCAACAGGAGGAGGACCAACAGCAGCAACAGCAGCAGCAGCTGGA
GTCAGGACAGCGGTGGAAGGATCTAATGAGAGGGTAGAAAGTAGCGTGGA
TCCAACCAATAGCAGCAGGAGTGCAACCTCGCCAGGAACCTCATCGTCCT
CATCACCCTGGCCCGCACCTTCCTCATCACCGGCGGCGGGAGGGGGGCAA
GACGGGTTGTTAAGTTTGTTTGGACAGGTCTTACGGAGGCCTCTCTGGAC
TGCCCCCACTTCAGCGTTTGCAGTACCTCCTCCGGGTGCTGCTGCATTTA
GGGAGGAAGCCAAAGAGGACGAGCACGAGGGCATGGTGATCATCCCGCTG
GGGGGATCTGCTACCGCGTCAGCGGTGGCAACAACGGCGGCAGCAGCTGC
AGCAGAAGGAGTGTCAACGACGGCTGATGCGGCATCAGGGGAAGGAAGGC
GGCATTTGTTTGCGTGGATATGTTCTCAATGCCTCCGTCCAGGTGGACCC
GGGGCTTGGAGGAGCGCGCACTCAGCCGCCGCTGCGACTGGCGCAGGCGG
TGCTGCCTCCAGGCTGCCCCACCGCGGGGGCGAGGACGAGGATGAGGACG
AGGACGAGGCGGCAGACACCGACACAGGCGCCTCCCCGCACCCAGTCGCT
CCCCCCTCCTCTTCCTCCTCCTCGACCTCCTACTCCCCATCGGTCCTGGC
GGCCGCCTGCGCCACGGCCGTCCGCCGGCATCACCTCCTCATCCTCTGGT
CGTTTGGAGGCCTGATGCTCCTGCGAATGGCCCTGGTGGCGTTCCAACGC
CGCGACAGCAAGCTACTCGTATTCACCTCCCTGGTCCTGGCCCTGGCCGT
CTACATCTGGTGGACCAGGAGGGTCAGGCAAGCCCGCCTGGAGGCCCTGC
GCGAGGCGGCGATGCACAGCGAGCACGTGGCCATGATGCAGCACATCGCC
AGCGCCAGGGAGGGGGGGAGGGGGGGAAGGAGGGGGGGCTTGGAGTCGGT
CGACTTGGAGGAGTTGCAGAGCATCATGTTGGAGGCGCGGAGGCAAGGGG
AGCTCCAGGGAGGGCTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGTGGG
CTGTCGCCTCACAGTAAGGCCGCCCTGGTCAGATTTTCATTTCGATCCAA
CTCCAGCTCCAGTGGCTACTTCGGGGCGGAGGGAGGTCGGGGAGGAGAGG
AGGAGGAAGCAGAGGGGGAAGGGAAGGAAAGTGGATGGCAGGGGGGGGGA
GCGGTGTGTCCCTAG

Coding sequence (CDS) from alignment at chr30:182253..184417-

>NO30G00440.1 ID=NO30G00440.1|Name=NO30G00440.1|organism=Nannochloropsis oceanica|type=CDS|length=1488bp|location=Sequence derived from alignment at chr30:182253..184417- (Nannochloropsis oceanica)
ATGCGCCGGTCCTTGCCGGAAGGCGTAGAAGACGTGCAAGATGCCGCTGC
CTCCTCCTCGGATCCTGATGCAGCCGCCCGTGGGGTGGTGCCGGTGAACA
ACGTGACGCTCATGATCTCAAGACGGGCTGGACGCTTGAACTCGTTGTCA
GACGATGAAGACGATGACAATGAGGACCAGTTGACGCTGGAGGAGGAGCA
AGCCACGGCGGCAGCAGCAGCAGCAGCAGCAACAGGAGGAGGACCAACAG
CAGCAACAGCAGCAGCAGCTGGAGTCAGGACAGCGGTGGAAGGATCTAAT
GAGAGGGTAGAAAGTAGCGTGGATCCAACCAATAGCAGCAGGAGTGCAAC
CTCGCCAGGAACCTCATCGTCCTCATCACCCTGGCCCGCACCTTCCTCAT
CACCGGCGGCGGGAGGGGGGCAAGACGGGTTGTTAAGTTTGTTTGGACAG
GTCTTACGGAGGCCTCTCTGGACTGCCCCCACTTCAGCGTTTGCAGTACC
TCCTCCGGGTGCTGCTGCATTTAGGGAGGAAGCCAAAGAGGACGAGCACG
AGGGCATGGTGATCATCCCGCTGGGGGGATCTGCTACCGCGTCAGCGGTG
GCAACAACGGCGGCAGCAGCTGCAGCAGAAGGAGTGTCAACGACGGCTGA
TGCGGCATCAGGGGAAGGAAGGCGGCATTTGTTTGCGTGGATATGTTCTC
AATGCCTCCGTCCAGGTGGACCCGGGGCTTGGAGGAGCGCGCACTCAGCC
GCCGCTGCGACTGGCGCAGGCGGTGCTGCCTCCAGGCTGCCCCACCGCGG
GGGCGAGGACGAGGATGAGGACGAGGACGAGGCGGCAGACACCGACACAG
GCGCCTCCCCGCACCCAGTCGCTCCCCCCTCCTCTTCCTCCTCCTCGACC
TCCTACTCCCCATCGGTCCTGGCGGCCGCCTGCGCCACGGCCGTCCGCCG
GCATCACCTCCTCATCCTCTGGTCGTTTGGAGGCCTGATGCTCCTGCGAA
TGGCCCTGGTGGCGTTCCAACGCCGCGACAGCAAGCTACTCGTATTCACC
TCCCTGGTCCTGGCCCTGGCCGTCTACATCTGGTGGACCAGGAGGGTCAG
GCAAGCCCGCCTGGAGGCCCTGCGCGAGGCGGCGATGCACAGCGAGCACG
TGGCCATGATGCAGCACATCGCCAGCGCCAGGGAGGGGGGGAGGGGGGGA
AGGAGGGGGGGCTTGGAGTCGGTCGACTTGGAGGAGTTGCAGAGCATCAT
GTTGGAGGCGCGGAGGCAAGGGGAGCTCCAGGGAGGGCTGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCGTGGGCTGTCGCCTCACAGTAAGGCCGCCCTG
GTCAGATTTTCATTTCGATCCAACTCCAGCTCCAGTGGCTACTTCGGGGC
GGAGGGAGGTCGGGGAGGAGAGGAGGAGGAAGCAGAGGGGGAAGGGAAGG
AAAGTGGATGGCAGGGGGGGGGAGCGGTGTGTCCCTAG

Synonyms

Publications