NO30G00430.1, NO30G00430.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO30G00430.1
Unique NameNO30G00430.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1112
Alignment locationchr30:181130..182241 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:181130..182241 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO30G00430.1 vs.
Match: EWM20583.1 (Zinc finger, RING-type [Nannochloropsis gaditana])

HSP 1 Score: 122.1 bits (305), Expect = 2.700e-24
Identity = 110/279 (39.43%), Postives = 141/279 (50.54%), Query Frame = 0 
Query:    8 EEEGVENGREGGSMTTLRQKTRPSMRSSSSQSLG---GKQPGESAVGGEEEGGQWRRESEGKEGERGKEERIPLRWLSGAGSSSRMGLEDEDGGNGGRQGGGEGWGGHEGGGREREGEGEGVNPLLKTAHVDKHCSICLADYEEGDTLCVLPCRHSYHDDCLDHWITAHSKCPLCNYDLLLAGAATAATLPPSFRGGQDQIMPMAPRHGRRVGGGMDGDQED---------RDSTRLQQQQRRLER-----QRRRNMYEDRREAAAGSSNVLRIVTMEA 270
            +EE  + G    S   LR   R + R+ S +  G   G++  E    GEE  G+  +   G+  E G+E           G     G   E  G  GR+   EG G  +GG    EG  EG    LK A VD+HCSICL DYEEG+TLC+LPCRH+YHDDCL+ WI+AH+KCPLCNYDLLLA  ATAA++            P+    G  VGGG  GD+E+         R++  +    R+ ER     + R      R E   G  NV+RIV MEA
Sbjct:   15 QEESADRGLSPRSKANLR---RFAFRADSFRGAGAEAGEEGSEEEGRGEEGRGEGEKAQGGRRREGGRE----------GGREDGSGSWGEGSGRVGRESALEGAGEEKGG---MEGGEEGGEECLKRARVDRHCSICLGDYEEGETLCLLPCRHTYHDDCLNVWISAHAKCPLCNYDLLLA-QATAASM------ASHAASPLP--GGDLVGGGGAGDEEEAQLEEEALARENMMMPWPWRQGERRWGGGRGREGGRWGRGEPRGGEGNVVRIVRMEA 268
The following BLAST results are available for this feature:
BLAST of NO30G00430.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20583.12.700e-2439.43Zinc finger, RING-type [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO30G00430NO30G00430Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO30G00430.1NO30G00430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO30G00430.1.cds1NO30G00430.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO30G00430.1 ID=NO30G00430.1|Name=NO30G00430.1|organism=Nannochloropsis oceanica|type=mRNA|length=1112bp
ATGGTATGGGAAGAGGTGGAGGAAGAGGAGGGGGTTGAGAATGGAAGGGA
GGGAGGGAGCATGACGACGTTGCGGCAGAAGACGAGGCCATCGATGCGAT
CGTCATCGTCGCAGTCGCTTGGGGGGAAGCAGCCGGGGGAGTCGGCGGTG
GGGGGCGAGGAGGAGGGGGGGCAGTGGCGCCGGGAGAGCGAAGGAAAGGA
GGGGGAGAGAGGAAAGGAGGAAAGGATCCCGTTGCGCTGGTTGTCGGGGG
CGGGTAGCAGCAGCAGGATGGGATTGGAAGATGAAGATGGAGGGAATGGA
GGGCGGCAAGGTGGGGGGGAGGGATGGGGGGGGCACGAAGGAGGAGGCAG
AGAAAGAGAAGGAGAAGGAGAAGGAGTAAATCCGCTCCTAAAGACGGCGC
ACGTGGACAAGCACTGCAGCATTTGTCTGGCGGACTATGAGGAGGGCGAT
ACGTTGTGCGTGCTGCCATGCCGACACTCGTACCACGACGACTGCCTAGA
CCACTGGATCACGGCCCACTCCAAGTGCCCCTTGTGCAACTACGACCTCC
TCCTCGCCGGTGCGGCTACTGCTGCTACTCTCCCACCGTCTTTCCGGGGG
GGGCAAGATCAGATCATGCCCATGGCACCGAGGCATGGGAGGAGGGTGGG
GGGAGGAATGGACGGGGATCAGGAGGACAGGGACTCAACGCGCCTGCAGC
AGCAGCAGCGACGGCTTGAGCGGCAAAGGCGGCGGAACATGTATGAGGAC
CGAAGAGAGGCGGCCGCTGGCTCATCCAACGTGCTGCGGATCGTCACGAT
GGAAGCTTAGAGTTATGTGGCCGAGGCGCTGAGTGTCGTCAAGTTTGGTC
AGAAGGGAGTGAAAAGCAAGGAGTTGAGAGAGAGAGAGGGGGGAAGAGAG
AGAGAGAGAGAGAAAAAGAGAGAGGTCATGGAGGAGGAGAAGGGGAATGG
GGAGGAGTGAAGTGATATGTGACAGTAAGAGTTGGGGCGGTGTGGAATCC
TTAACTCTTACCGAGGGAGACAACAGGCCAAAAACTAACGGCAAGAAGAT
GGACACAGCAAAGCGTACTTTAACAATAAGTGTAAAAGAAGGGAACACAC
GCGAGGGAAGAG
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protein sequence of NO30G00430.1

>NO30G00430.1-protein ID=NO30G00430.1-protein|Name=NO30G00430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=270bp
MVWEEVEEEEGVENGREGGSMTTLRQKTRPSMRSSSSQSLGGKQPGESAV
GGEEEGGQWRRESEGKEGERGKEERIPLRWLSGAGSSSRMGLEDEDGGNG
GRQGGGEGWGGHEGGGREREGEGEGVNPLLKTAHVDKHCSICLADYEEGD
TLCVLPCRHSYHDDCLDHWITAHSKCPLCNYDLLLAGAATAATLPPSFRG
GQDQIMPMAPRHGRRVGGGMDGDQEDRDSTRLQQQQRRLERQRRRNMYED
RREAAAGSSNVLRIVTMEA*
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mRNA from alignment at chr30:181130..182241-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO30G00430.1 ID=NO30G00430.1|Name=NO30G00430.1|organism=Nannochloropsis oceanica|type=mRNA|length=1112bp|location=Sequence derived from alignment at chr30:181130..182241- (Nannochloropsis oceanica)
ATGGTATGGGAAGAGGTGGAGGAAGAGGAGGGGGTTGAGAATGGAAGGGA
GGGAGGGAGCATGACGACGTTGCGGCAGAAGACGAGGCCATCGATGCGAT
CGTCATCGTCGCAGTCGCTTGGGGGGAAGCAGCCGGGGGAGTCGGCGGTG
GGGGGCGAGGAGGAGGGGGGGCAGTGGCGCCGGGAGAGCGAAGGAAAGGA
GGGGGAGAGAGGAAAGGAGGAAAGGATCCCGTTGCGCTGGTTGTCGGGGG
CGGGTAGCAGCAGCAGGATGGGATTGGAAGATGAAGATGGAGGGAATGGA
GGGCGGCAAGGTGGGGGGGAGGGATGGGGGGGGCACGAAGGAGGAGGCAG
AGAAAGAGAAGGAGAAGGAGAAGGAGTAAATCCGCTCCTAAAGACGGCGC
ACGTGGACAAGCACTGCAGCATTTGTCTGGCGGACTATGAGGAGGGCGAT
ACGTTGTGCGTGCTGCCATGCCGACACTCGTACCACGACGACTGCCTAGA
CCACTGGATCACGGCCCACTCCAAGTGCCCCTTGTGCAACTACGACCTCC
TCCTCGCCGGTGCGGCTACTGCTGCTACTCTCCCACCGTCTTTCCGGGGG
GGGCAAGATCAGATCATGCCCATGGCACCGAGGCATGGGAGGAGGGTGGG
GGGAGGAATGGACGGGGATCAGGAGGACAGGGACTCAACGCGCCTGCAGC
AGCAGCAGCGACGGCTTGAGCGGCAAAGGCGGCGGAACATGTATGAGGAC
CGAAGAGAGGCGGCCGCTGGCTCATCCAACGTGCTGCGGATCGTCACGAT
GGAAGCTTAGAGTTATGTGGCCGAGGCGCTGAGTGTCGTCAAGTTTGGTC
AGAAGGGAGTGAAAAGCAAGGAGTTGAGAGAGAGAGAGGGGGGAAGAGAG
AGAGAGAGAGAGAAAAAGAGAGAGGTCATGGAGGAGGAGAAGGGGAATGG
GGAGGAGTGAAGTGATATGTGACAGTAAGAGTTGGGGCGGTGTGGAATCC
TTAACTCTTACCGAGGGAGACAACAGGCCAAAAACTAACGGCAAGAAGAT
GGACACAGCAAAGCGTACTTTAACAATAAGTGTAAAAGAAGGGAACACAC
GCGAGGGAAGAG
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Coding sequence (CDS) from alignment at chr30:181130..182241-

>NO30G00430.1 ID=NO30G00430.1|Name=NO30G00430.1|organism=Nannochloropsis oceanica|type=CDS|length=810bp|location=Sequence derived from alignment at chr30:181130..182241- (Nannochloropsis oceanica)
ATGGTATGGGAAGAGGTGGAGGAAGAGGAGGGGGTTGAGAATGGAAGGGA
GGGAGGGAGCATGACGACGTTGCGGCAGAAGACGAGGCCATCGATGCGAT
CGTCATCGTCGCAGTCGCTTGGGGGGAAGCAGCCGGGGGAGTCGGCGGTG
GGGGGCGAGGAGGAGGGGGGGCAGTGGCGCCGGGAGAGCGAAGGAAAGGA
GGGGGAGAGAGGAAAGGAGGAAAGGATCCCGTTGCGCTGGTTGTCGGGGG
CGGGTAGCAGCAGCAGGATGGGATTGGAAGATGAAGATGGAGGGAATGGA
GGGCGGCAAGGTGGGGGGGAGGGATGGGGGGGGCACGAAGGAGGAGGCAG
AGAAAGAGAAGGAGAAGGAGAAGGAGTAAATCCGCTCCTAAAGACGGCGC
ACGTGGACAAGCACTGCAGCATTTGTCTGGCGGACTATGAGGAGGGCGAT
ACGTTGTGCGTGCTGCCATGCCGACACTCGTACCACGACGACTGCCTAGA
CCACTGGATCACGGCCCACTCCAAGTGCCCCTTGTGCAACTACGACCTCC
TCCTCGCCGGTGCGGCTACTGCTGCTACTCTCCCACCGTCTTTCCGGGGG
GGGCAAGATCAGATCATGCCCATGGCACCGAGGCATGGGAGGAGGGTGGG
GGGAGGAATGGACGGGGATCAGGAGGACAGGGACTCAACGCGCCTGCAGC
AGCAGCAGCGACGGCTTGAGCGGCAAAGGCGGCGGAACATGTATGAGGAC
CGAAGAGAGGCGGCCGCTGGCTCATCCAACGTGCTGCGGATCGTCACGAT
GGAAGCTTAG
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Synonyms
Publications