NO30G00430, NO30G00430 (gene) Nannochloropsis oceanica

Overview
NameNO30G00430
Unique NameNO30G00430
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1112
Alignment locationchr30:181130..182241 -

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Properties
Property NameValue
DescriptionZinc finger, RING-type
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:181130..182241 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
Homology
[Close]
BLAST of NO30G00430 vs. NCBI_GenBank
Match: EWM20583.1 (Zinc finger, RING-type [Nannochloropsis gaditana])

HSP 1 Score: 116.3 bits (290), Expect = 1.500e-22
Identity = 48/63 (76.19%), Postives = 56/63 (88.89%), Query Frame = 0 
Query:  130 LKTAHVDKHCSICLADYEEGDTLCVLPCRHSYHDDCLDHWITAHSKCPLCNYDLLLAGAATAA 193
            LK A VD+HCSICL DYEEG+TLC+LPCRH+YHDDCL+ WI+AH+KCPLCNYDLLLA A  A+
Sbjct:  124 LKRARVDRHCSICLGDYEEGETLCLLPCRHTYHDDCLNVWISAHAKCPLCNYDLLLAQATAAS 186
[Close]
BLAST of NO30G00430 vs. NCBI_GenBank
Match: XP_002287178.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED94621.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 83.2 bits (204), Expect = 1.400e-12
Identity = 41/90 (45.56%), Postives = 51/90 (56.67%), Query Frame = 0 
Query:  129 LLKTAHVDKHCSICLADYEEGDTLCVLPCRHSYHDDCLDHWITAHSKCPLCNYDLLLAGAATAATLPPSFRGGQDQIMPMAPRHGRRVGG 219
            LL +   +  CSICL +YE+GD +  LPC H YH  CLD W T H +CPLCNYDL+          PP+ + GQ Q     PR+G  V G
Sbjct:  347 LLLSDDEEPSCSICLCEYEKGDAVTRLPCHHIYHKSCLDSWTTNHVRCPLCNYDLM------EGFDPPAIQAGQQQ-----PRNGASVVG 425
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BLAST of NO30G00430 vs. NCBI_GenBank
Match: XP_004022041.1 (PREDICTED: E3 ubiquitin-protein ligase RLIM-like [Ovis aries])

HSP 1 Score: 75.9 bits (185), Expect = 2.200e-10
Identity = 25/43 (58.14%), Postives = 34/43 (79.07%), Query Frame = 0 
Query:  137 KHCSICLADYEEGDTLCVLPCRHSYHDDCLDHWITAHSKCPLC 180
            K CSIC+ +Y  G+TLC+LPC H YHD C+DHW++ H+ CP+C
Sbjct:  580 KVCSICITEYTTGNTLCILPCSHEYHDHCIDHWLSEHTTCPIC 622
[Close]
BLAST of NO30G00430 vs. NCBI_GenBank
Match: XP_012028539.1 (PREDICTED: E3 ubiquitin-protein ligase RLIM-like [Ovis aries musimon])

HSP 1 Score: 75.9 bits (185), Expect = 2.200e-10
Identity = 25/43 (58.14%), Postives = 34/43 (79.07%), Query Frame = 0 
Query:  137 KHCSICLADYEEGDTLCVLPCRHSYHDDCLDHWITAHSKCPLC 180
            K CSIC+ +Y  G+TLC+LPC H YHD C+DHW++ H+ CP+C
Sbjct:  580 KVCSICITEYTTGNTLCILPCSHEYHDHCIDHWLSEHTTCPIC 622
[Close]
BLAST of NO30G00430 vs. NCBI_GenBank
Match: XP_005701015.2 (PREDICTED: E3 ubiquitin-protein ligase RLIM-like [Capra hircus])

HSP 1 Score: 75.9 bits (185), Expect = 2.200e-10
Identity = 25/43 (58.14%), Postives = 33/43 (76.74%), Query Frame = 0 
Query:  137 KHCSICLADYEEGDTLCVLPCRHSYHDDCLDHWITAHSKCPLC 180
            K CSIC+ +Y  G+TLC+LPC H YHD C+DHW+  H+ CP+C
Sbjct:  579 KACSICITEYTAGNTLCILPCSHEYHDHCIDHWLAEHTTCPIC 621
[Close]
BLAST of NO30G00430 vs. NCBI_GenBank
Match: GAX24728.1 (hypothetical protein FisN_4Hh286 [Fistulifera solaris])

HSP 1 Score: 74.7 bits (182), Expect = 4.900e-10
Identity = 27/48 (56.25%), Postives = 34/48 (70.83%), Query Frame = 0 
Query:  136 DKHCSICLADYEEGDTLCVLPCRHSYHDDCLDHWITAHSKCPLCNYDL 184
            + HCSICL +YE GD    LPC H YH++C+  W T H+KCPLCN +L
Sbjct:  257 EPHCSICLCEYEGGDACVKLPCHHIYHEECISSWTTNHTKCPLCNLEL 304
[Close]
BLAST of NO30G00430 vs. NCBI_GenBank
Match: GAX24196.1 (hypothetical protein FisN_4Lh286 [Fistulifera solaris])

HSP 1 Score: 74.3 bits (181), Expect = 6.400e-10
Identity = 27/48 (56.25%), Postives = 33/48 (68.75%), Query Frame = 0 
Query:  136 DKHCSICLADYEEGDTLCVLPCRHSYHDDCLDHWITAHSKCPLCNYDL 184
            + HCSICL +YE GD    LPC H YHD+C+  W   H+KCPLCN +L
Sbjct:  269 EPHCSICLCEYEGGDACVKLPCHHIYHDECISSWTVNHTKCPLCNLEL 316
[Close]
BLAST of NO30G00430 vs. NCBI_GenBank
Match: XP_004356497.1 (zinc finger, C3HC4 type (RING finger) domain containing protein [Acanthamoeba castellanii str. Neff] >ELR24597.1 zinc finger, C3HC4 type (RING finger) domain containing protein [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 72.8 bits (177), Expect = 1.800e-9
Identity = 30/61 (49.18%), Postives = 37/61 (60.66%), Query Frame = 0 
Query:  131 KTAHVDKHCSICLADYEEGDTLCVLPCRHSYH------------DDCLDHWITAHSKCPLC 180
            K    D  C+ICL DYEEGDTL  LPC HSYH            +DC+DHW+ +H+ CP+C
Sbjct:  119 KADQEDNKCTICLCDYEEGDTLRALPCLHSYHKYRRLAISALEVEDCIDHWLKSHNTCPVC 179
[Close]
BLAST of NO30G00430 vs. NCBI_GenBank
Match: XP_010846736.1 (PREDICTED: E3 ubiquitin-protein ligase RLIM-like [Bison bison bison])

HSP 1 Score: 72.0 bits (175), Expect = 3.200e-9
Identity = 24/43 (55.81%), Postives = 33/43 (76.74%), Query Frame = 0 
Query:  137 KHCSICLADYEEGDTLCVLPCRHSYHDDCLDHWITAHSKCPLC 180
            K CSIC+ +Y  G+TL +LPC H YHD C+DHW++ H+ CP+C
Sbjct:  576 KACSICITEYTTGNTLRILPCSHEYHDHCIDHWLSEHTNCPIC 618
[Close]
BLAST of NO30G00430 vs. NCBI_GenBank
Match: XP_005908867.1 (PREDICTED: E3 ubiquitin-protein ligase RLIM [Bos mutus] >ELR46825.1 hypothetical protein M91_00207 [Bos mutus])

HSP 1 Score: 71.6 bits (174), Expect = 4.100e-9
Identity = 24/43 (55.81%), Postives = 33/43 (76.74%), Query Frame = 0 
Query:  137 KHCSICLADYEEGDTLCVLPCRHSYHDDCLDHWITAHSKCPLC 180
            K CSIC+ +Y  G+TL +LPC H YHD C+DHW++ H+ CP+C
Sbjct:  576 KACSICITEYTTGNTLRILPCSHEYHDHCIDHWLSEHTTCPIC 618
The following BLAST results are available for this feature:
BLAST of NO30G00430 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM20583.11.500e-2276.19Zinc finger, RING-type [Nannochloropsis gaditana][more]
XP_002287178.11.400e-1245.56predicted protein [Thalassiosira pseudonana CCMP13... [more]
XP_004022041.12.200e-1058.14PREDICTED: E3 ubiquitin-protein ligase RLIM-like [... [more]
XP_012028539.12.200e-1058.14PREDICTED: E3 ubiquitin-protein ligase RLIM-like [... [more]
XP_005701015.22.200e-1058.14PREDICTED: E3 ubiquitin-protein ligase RLIM-like [... [more]
GAX24728.14.900e-1056.25hypothetical protein FisN_4Hh286 [Fistulifera sola... [more]
GAX24196.16.400e-1056.25hypothetical protein FisN_4Lh286 [Fistulifera sola... [more]
XP_004356497.11.800e-949.18zinc finger, C3HC4 type (RING finger) domain conta... [more]
XP_010846736.13.200e-955.81PREDICTED: E3 ubiquitin-protein ligase RLIM-like [... [more]
XP_005908867.14.100e-955.81PREDICTED: E3 ubiquitin-protein ligase RLIM [Bos m... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR051ncniR051Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR102ngnoR102Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO30G00430.1NO30G00430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|560215gene_9277Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101076g3gene9824Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO30G00430.1NO30G00430.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO30G00430 ID=NO30G00430|Name=NO30G00430|organism=Nannochloropsis oceanica|type=gene|length=1112bp
ATGGTATGGGAAGAGGTGGAGGAAGAGGAGGGGGTTGAGAATGGAAGGGA
GGGAGGGAGCATGACGACGTTGCGGCAGAAGACGAGGCCATCGATGCGAT
CGTCATCGTCGCAGTCGCTTGGGGGGAAGCAGCCGGGGGAGTCGGCGGTG
GGGGGCGAGGAGGAGGGGGGGCAGTGGCGCCGGGAGAGCGAAGGAAAGGA
GGGGGAGAGAGGAAAGGAGGAAAGGATCCCGTTGCGCTGGTTGTCGGGGG
CGGGTAGCAGCAGCAGGATGGGATTGGAAGATGAAGATGGAGGGAATGGA
GGGCGGCAAGGTGGGGGGGAGGGATGGGGGGGGCACGAAGGAGGAGGCAG
AGAAAGAGAAGGAGAAGGAGAAGGAGTAAATCCGCTCCTAAAGACGGCGC
ACGTGGACAAGCACTGCAGCATTTGTCTGGCGGACTATGAGGAGGGCGAT
ACGTTGTGCGTGCTGCCATGCCGACACTCGTACCACGACGACTGCCTAGA
CCACTGGATCACGGCCCACTCCAAGTGCCCCTTGTGCAACTACGACCTCC
TCCTCGCCGGTGCGGCTACTGCTGCTACTCTCCCACCGTCTTTCCGGGGG
GGGCAAGATCAGATCATGCCCATGGCACCGAGGCATGGGAGGAGGGTGGG
GGGAGGAATGGACGGGGATCAGGAGGACAGGGACTCAACGCGCCTGCAGC
AGCAGCAGCGACGGCTTGAGCGGCAAAGGCGGCGGAACATGTATGAGGAC
CGAAGAGAGGCGGCCGCTGGCTCATCCAACGTGCTGCGGATCGTCACGAT
GGAAGCTTAGAGTTATGTGGCCGAGGCGCTGAGTGTCGTCAAGTTTGGTC
AGAAGGGAGTGAAAAGCAAGGAGTTGAGAGAGAGAGAGGGGGGAAGAGAG
AGAGAGAGAGAGAAAAAGAGAGAGGTCATGGAGGAGGAGAAGGGGAATGG
GGAGGAGTGAAGTGATATGTGACAGTAAGAGTTGGGGCGGTGTGGAATCC
TTAACTCTTACCGAGGGAGACAACAGGCCAAAAACTAACGGCAAGAAGAT
GGACACAGCAAAGCGTACTTTAACAATAAGTGTAAAAGAAGGGAACACAC
GCGAGGGAAGAG
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protein sequence of NO30G00430.1

>NO30G00430.1-protein ID=NO30G00430.1-protein|Name=NO30G00430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=270bp
MVWEEVEEEEGVENGREGGSMTTLRQKTRPSMRSSSSQSLGGKQPGESAV
GGEEEGGQWRRESEGKEGERGKEERIPLRWLSGAGSSSRMGLEDEDGGNG
GRQGGGEGWGGHEGGGREREGEGEGVNPLLKTAHVDKHCSICLADYEEGD
TLCVLPCRHSYHDDCLDHWITAHSKCPLCNYDLLLAGAATAATLPPSFRG
GQDQIMPMAPRHGRRVGGGMDGDQEDRDSTRLQQQQRRLERQRRRNMYED
RREAAAGSSNVLRIVTMEA*
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Synonyms
Publications