NO30G00420.1, NO30G00420.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO30G00420.1
Unique NameNO30G00420.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1661
Alignment locationchr30:178841..181114 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:178841..181114 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO30G00420.1 vs.
Match: CBN75189.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 112.1 bits (279), Expect = 2.400e-21
Identity = 79/234 (33.76%), Postives = 113/234 (48.29%), Query Frame = 0 
Query:   14 VLLVTIWLMAASNALRPLSSSSSTRLRSSA----LFQFLHSSPCSSCSSSTPHDDHHHHHHHSCGCGSRPSFSSPRQI---------SRTSSYQQRRAPPSFLALQGGPLLDYDMIHVAGDVVAGFVGGAVGVMGTIMALEVKMRQVNERSKCPYCSGSGQLTCARCCGLQSISIRRGAEGGGEGGRVEKEPCPSCLGVGTVLCINCKGDGLAIPVMLDKKVSRDPETRLEEYG 235
            +L +      +  A  P+SSS      +SA    L +   +SP SSC+                G G R +    R+          SRT++   R     F     G LL+    H    + + F GG VGV+GT+ A+++K+ +V E + CPYC  +GQL CA C G+ SIS+        E        CPSC G G + C+NCKGDG  +P+ L+KKVSRDPE+ +E+ G
Sbjct:    7 ILTLLALFCQSPQAFVPISSSQPRARLASAGSHRLSREARASPLSSCNIE--------------GRGGRTAVQPTRRRNRGRGGTGKSRTATGGVRELRAGFDLPGLGALLEQSTRH---HIPSAFTGGTVGVLGTLSAIQLKINEVKELTACPYCRSTGQLPCATCFGVGSISVLDTVASSNE-VTTTTLTCPSCRGKGFITCVNCKGDGRGVPLFLNKKVSRDPESEIEDVG 222
The following BLAST results are available for this feature:
BLAST of NO30G00420.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBN75189.12.400e-2133.76conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO30G00420NO30G00420Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO30G00420.1NO30G00420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO30G00420.1.cds1NO30G00420.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00420.1.cds2NO30G00420.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00420.1.cds3NO30G00420.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO30G00420.1 ID=NO30G00420.1|Name=NO30G00420.1|organism=Nannochloropsis oceanica|type=mRNA|length=1661bp
AGGGAATGGGATTTTCTTTTCTCTTGGTTTTCTGTTCCACCAGCTTGGTA
CAGCACACCACCCGGAAGTCAAGCTTCAATGCACGCGCTGACATGGGGGG
GCGATGTCAACTGTCCGTCGTCTCACGTCATTCCGAATACAAGGAACAGC
AGCAGCGGGAGATCCAGAAGCGGCACTGCTCGTGAAGCGAGGACATGAGG
AGAGCACTGGCTCGCGTGACGCCGCGCTTGCTCGTCCTCTTGGTGACTAT
CTGGCTCATGGCGGCCTCCAACGCCCTCAGGCCGCTGTCCTCATCCTCTT
CCACAAGACTAAGATCATCAGCCCTCTTTCAATTCTTGCACTCTTCCCCT
TGCTCCTCCTGCTCATCTTCCACCCCTCACGACGACCACCACCACCACCA
CCACCATTCCTGCGGCTGTGGATCTCGCCCCTCCTTCTCCTCCCCCCGGC
AAATATCTCGCACCTCATCATATCAACAAAGAAGAGCTCCTCCTTCCTTC
CTAGCCCTTCAAGGCGGTCCTCTGCTGGACTATGACATGATCCACGTGGC
GGGCGATGTCGTGGCGGGCTTTGTGGGCGGCGCCGTGGGGGTCATGGGCA
CCATCATGGCCCTTGAGGTCAAGATGCGGCAAGTAAATGAACGCAGCAAG
TGTCCCTATTGCTCCGGTTCAGGCCAGCTGACGTGTGCTCGGTGCTGCGG
CCTGCAAAGCATAAGCATCCGTCGAGGTGCCGAGGGAGGGGGCGAAGGAG
GGCGGGTGGAGAAGGAGCCGTGTCCTTCCTGCCTGGGCGTGGGGACGGTC
CTGTGCATCAACTGCAAGGGCGACGGGCTGGCCATCCCGGTGATGCTGGA
CAAGAAGGTGTCGAGGGACCCGGAGACGCGGCTGGAGGAGTACGGCATGG
GGTAAGGAGCTCCTCCTACCTCCCCACCTCCCCCCTCCCTCACTCAGGGG
TGTGTGGCCTTTGGTTGGAGTGGTGAGGTGAAGAGGACGTGGCAGGGACT
AGGAGGGCGTAGCGACTGCGGCTTATGGCAGATCCACAGGAGGGGGATTA
ATGAGCACGCAAAAAGCTGGGCCTCGAGGTGCTGGGGGAAGGAGGGGGAG
GAGGAGGGTAACGAAGAAAAGGAAGAGGAGGAGAAAGGAGGAATGGGCCG
AGGCGAAGAGGGAGTGGGGGGAAAGAGGGAGGGAGGGAGATCTTAATGAA
AAGGTAGAAAAGTGGGATATGCTGCTGGTGGGTGTGGCAGTGGGGGGGGA
GGAGGGAGGAAGGAAGCGGGCAGTAGCGACGGCGGCAGTAGCAACAGAAG
GACAAGAAGGATGAGAAGATGGATAAGGTGATGATGATGATGATGACGAA
GCCGAAATTGATAAGGAGGAGGGAAAACGAAGTCATGCTGAAGAAGACGA
AGACAAGAAGACGAAGAAGAAGAAGAAGAAGAAGAAATAGAAGCAGAAGA
AGGACGAGAAAAGGAAAAAAGAACATGAATGACACGAGCAAGAATGTTGT
AGGTCCAAGGACAAGCCCGAGCCCCCGACAAACAAGCGAAAGATGTGAGC
GCCGTGTCCCGTCTGGCTCTTGTAAGTGGGAGTAGGGGGTCGCGATGTAT
GGATGGGCGCGACAGAGAGAGTGCTGGGAGGGACGTGGATGTAAGACACA
GTGCGCTTCAA
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protein sequence of NO30G00420.1

>NO30G00420.1-protein ID=NO30G00420.1-protein|Name=NO30G00420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=237bp
MRRALARVTPRLLVLLVTIWLMAASNALRPLSSSSSTRLRSSALFQFLHS
SPCSSCSSSTPHDDHHHHHHHSCGCGSRPSFSSPRQISRTSSYQQRRAPP
SFLALQGGPLLDYDMIHVAGDVVAGFVGGAVGVMGTIMALEVKMRQVNER
SKCPYCSGSGQLTCARCCGLQSISIRRGAEGGGEGGRVEKEPCPSCLGVG
TVLCINCKGDGLAIPVMLDKKVSRDPETRLEEYGMG*
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mRNA from alignment at chr30:178841..181114-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO30G00420.1 ID=NO30G00420.1|Name=NO30G00420.1|organism=Nannochloropsis oceanica|type=mRNA|length=2274bp|location=Sequence derived from alignment at chr30:178841..181114- (Nannochloropsis oceanica)
AGGGAATGGGATTTTCTTTTCTCTTGGTTTTCTGTTCCACCAGCTTGGTA
CAGCACACCACCCGGAAGTCAAGCTTCAATGCACGCGCTGACATGGGGGG
GCGATGTCAACTGTCCGTCGTCTCACGTCATTCCGAATACAAGGTAATGC
TATGCATATGGCTGGAAACGAGGTGGAAGAATGCGCCCTAGCAGCCACTA
CTATGTCTTGATCTGAACAGAACGGGAGAGTGCGTGGCTCCAGCAAGAAT
GTAGTAAGGCCTCGTTTCCCCTATCCAACAAGTTGCACCTACGCTCACGT
TCTCATTCCCACATACATTTACTCATTTCGAAGGAACAGCAGCAGCGGGA
GATCCAGAAGCGGCACTGCTCGTGAAGCGAGGACATGAGGAGAGCACTGG
CTCGCGTGACGCCGCGCTTGCTCGTCCTCTTGGTGACTATCTGGCTCATG
GCGGTAAGTGCCACATGTTATGGAGGAGATTGTTTAAGCCTGGTGAACGC
AGTGTAAGAGAAGTTCTAGCAACACCATAATCACCAGCATGTGTCTGTTT
CATTTCCCGCTTCCTACTCCTATGCGTGCTGCTTGTTTCCCATCCCTTCA
ATCTCCCCCTCCCTGCACACGACGCTGCCCCTCCCCTCCCACTCCCAGGC
CTCCAACGCCCTCAGGCCGCTGTCCTCATCCTCTTCCACAAGACTAAGAT
CATCAGCCCTCTTTCAATTCTTGCACTCTTCCCCTTGCTCCTCCTGCTCA
TCTTCCACCCCTCACGACGACCACCACCACCACCACCACCATTCCTGCGG
CTGTGGATCTCGCCCCTCCTTCTCCTCCCCCCGGCAAATATCTCGCACCT
CATCATATCAACAAAGAAGAGCTCCTCCTTCCTTCCTAGCCCTTCAAGGC
GGTCCTCTGCTGGACTATGACATGATCCACGTGGCGGGCGATGTCGTGGC
GGGCTTTGTGGGCGGCGCCGTGGGGGTCATGGGCACCATCATGGCCCTTG
AGGTCAAGATGCGGCAAGGTAGGTGAGGGGCAGCGAGGAAGGGAGGGAGA
AAGGGGCGGAGGGAGGTAAGGAAGGCAGACAAAAGAGAGGACGGGTAGGA
AGAAAGAAAAGAGCCGAAGAAATGATTCTTACGGTCCATCTTCTCGTTCA
TGAGCCTCCAGGCGGCAGAAGGGCAGCAATAAAAGACCATCTCACGTACT
CCCTTCCTCCCTTCCTCCCTCCCGCCCTCCCTCGCTTGGTCCCCAGTAAA
TGAACGCAGCAAGTGTCCCTATTGCTCCGGTTCAGGCCAGCTGACGTGTG
CTCGGTGCTGCGGCCTGCAAAGCATAAGCATCCGTCGAGGTGCCGAGGGA
GGGGGCGAAGGAGGGCGGGTGGAGAAGGAGCCGTGTCCTTCCTGCCTGGG
CGTGGGGACGGTCCTGTGCATCAACTGCAAGGGCGACGGGCTGGCCATCC
CGGTGATGCTGGACAAGAAGGTGTCGAGGGACCCGGAGACGCGGCTGGAG
GAGTACGGCATGGGGTAAGGAGCTCCTCCTACCTCCCCACCTCCCCCCTC
CCTCACTCAGGGGTGTGTGGCCTTTGGTTGGAGTGGTGAGGTGAAGAGGA
CGTGGCAGGGACTAGGAGGGCGTAGCGACTGCGGCTTATGGCAGATCCAC
AGGAGGGGGATTAATGAGCACGCAAAAAGCTGGGCCTCGAGGTGCTGGGG
GAAGGAGGGGGAGGAGGAGGGTAACGAAGAAAAGGAAGAGGAGGAGAAAG
GAGGAATGGGCCGAGGCGAAGAGGGAGTGGGGGGAAAGAGGGAGGGAGGG
AGATCTTAATGAAAAGGTAGAAAAGTGGGATATGCTGCTGGTGGGTGTGG
CAGTGGGGGGGGAGGAGGGAGGAAGGAAGCGGGCAGTAGCGACGGCGGCA
GTAGCAACAGAAGGACAAGAAGGATGAGAAGATGGATAAGGTGATGATGA
TGATGATGACGAAGCCGAAATTGATAAGGAGGAGGGAAAACGAAGTCATG
CTGAAGAAGACGAAGACAAGAAGACGAAGAAGAAGAAGAAGAAGAAGAAA
TAGAAGCAGAAGAAGGACGAGAAAAGGAAAAAAGAACATGAATGACACGA
GCAAGAATGTTGTAGGTCCAAGGACAAGCCCGAGCCCCCGACAAACAAGC
GAAAGATGTGAGCGCCGTGTCCCGTCTGGCTCTTGTAAGTGGGAGTAGGG
GGTCGCGATGTATGGATGGGCGCGACAGAGAGAGTGCTGGGAGGGACGTG
GATGTAAGACACAGTGCGCTTCAA
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Coding sequence (CDS) from alignment at chr30:178841..181114-

>NO30G00420.1 ID=NO30G00420.1|Name=NO30G00420.1|organism=Nannochloropsis oceanica|type=CDS|length=711bp|location=Sequence derived from alignment at chr30:178841..181114- (Nannochloropsis oceanica)
ATGAGGAGAGCACTGGCTCGCGTGACGCCGCGCTTGCTCGTCCTCTTGGT
GACTATCTGGCTCATGGCGGCCTCCAACGCCCTCAGGCCGCTGTCCTCAT
CCTCTTCCACAAGACTAAGATCATCAGCCCTCTTTCAATTCTTGCACTCT
TCCCCTTGCTCCTCCTGCTCATCTTCCACCCCTCACGACGACCACCACCA
CCACCACCACCATTCCTGCGGCTGTGGATCTCGCCCCTCCTTCTCCTCCC
CCCGGCAAATATCTCGCACCTCATCATATCAACAAAGAAGAGCTCCTCCT
TCCTTCCTAGCCCTTCAAGGCGGTCCTCTGCTGGACTATGACATGATCCA
CGTGGCGGGCGATGTCGTGGCGGGCTTTGTGGGCGGCGCCGTGGGGGTCA
TGGGCACCATCATGGCCCTTGAGGTCAAGATGCGGCAAGTAAATGAACGC
AGCAAGTGTCCCTATTGCTCCGGTTCAGGCCAGCTGACGTGTGCTCGGTG
CTGCGGCCTGCAAAGCATAAGCATCCGTCGAGGTGCCGAGGGAGGGGGCG
AAGGAGGGCGGGTGGAGAAGGAGCCGTGTCCTTCCTGCCTGGGCGTGGGG
ACGGTCCTGTGCATCAACTGCAAGGGCGACGGGCTGGCCATCCCGGTGAT
GCTGGACAAGAAGGTGTCGAGGGACCCGGAGACGCGGCTGGAGGAGTACG
GCATGGGGTAA
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Synonyms
Publications