NO30G00420, NO30G00420 (gene) Nannochloropsis oceanica

Overview
NameNO30G00420
Unique NameNO30G00420
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2274
Alignment locationchr30:178841..181114 -

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Properties
Property NameValue
DescriptionEncodes a cl s contain a Cysteine-rich zinc finger domain that is highly specific to DnaJ-like molecular chaperons.
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:178841..181114 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO30G00420 vs. NCBI_GenBank
Match: CBN75189.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 78.6 bits (192), Expect = 3.000e-11
Identity = 69/147 (46.94%), Postives = 91/147 (61.90%), Query Frame = 0 
Query:   88 SRTSSYQQRRAPPSFLALQGGPLLDYDMIHVAGDVVAGFVGGAVGVMGTIMALEVKMRQVNERSKCPYCSGSGQLTCARCCGLQSISIRRGAEGGGEGGRVXXXXXXXXXXXXXXXXXXXXXDGLAIPVMLDKKVSRDPETRLEEYG 235
            SRT++   R     F     G LL+    H    + + F GG VGV+GT+ A+++K+ +V E + CPYC  +GQL CA C G+ SIS+        E    XXXXXXXXXXXXXXXXXXXXX    +P+ L+KKVSRDPE+ +E+ G
Sbjct:   80 SRTATGGVRELRAGFDLPGLGALLEQSTRH---HIPSAFTGGTVGVLGTLSAIQLKINEVKELTACPYCRSTGQLPCATCFGVGSISVLDTVASSNE-XXXXXXXXXXXXXXXXXXXXXXXXXXRGVPLFLNKKVSRDPESEIEDVG 222
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BLAST of NO30G00420 vs. NCBI_GenBank
Match: CBN73824.1 (DnaJ Cysteine-Rich Domain-Containing Protein [Ectocarpus siliculosus])

HSP 1 Score: 70.1 bits (170), Expect = 1.100e-8
Identity = 48/164 (29.27%), Postives = 73/164 (44.51%), Query Frame = 0 
Query:   75 CGSRPSFSSPRQISRTSSYQQRRAPPSFLALQGGPLLDYDMIHVAGDVVAGFVGGAVGVMGTIMALEVKMRQVNERSKCPYCSGSGQLTCARCCGLQSISIRRGAEGGGEGGRVXXXXXXXXXXXXXXXXXXXXXDGLAIPVMLDKKV--SRDPETRLEEYGMG 237
            C + P  S P  +   SS + R   P          ++ D +  A + +AG  GG+VGV+GT++ LE+K  ++  R  CPYC GSG+L CA C    + +++                                 DG A+P  LD+K   + + + RLEE GMG
Sbjct:   81 CRTAPR-SLPPPLGNGSSQRDRTIAPL-------RAINQDTLFSANEWIAGVAGGSVGVLGTLIQLELKQEKLKTRRNCPYCDGSGKLVCAVCFSAGTFTVKLPG-----SDTYSTLPCPGCAGNKYITCLNCRGDGRAVPRELDRKTADAAEVDLRLEEIGMG 231
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BLAST of NO30G00420 vs. NCBI_GenBank
Match: CEM11567.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 65.9 bits (159), Expect = 2.000e-7
Identity = 59/113 (52.21%), Postives = 76/113 (67.26%), Query Frame = 0 
Query:  124 AGFVGGAVGVMGTIMALEVKMRQVNERSKCPYCSGSGQLTCARCCGLQSISIRRGAEGGGEGGR-VXXXXXXXXXXXXXXXXXXXXXDGLAIPVMLDKKVSRDPETRLEEYGM 236
            A +VGG+VGV G++ A+ +K  +V  R  C +C GSG L C  C G + + ++RG     E     XXXXXXXXXXXXXXXXXXXXX  LAIP +L++K SRDPE  LE+ G+
Sbjct:   89 AAWVGGSVGVAGSLTAIMLKAEKVKSRDNCAFCKGSGALVCGNCHGNRFVLMKRGGGNIEEADEDCXXXXXXXXXXXXXXXXXXXXXXXLAIPPVLNRKRSRDPEGPLEDRGL 201
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BLAST of NO30G00420 vs. NCBI_GenBank
Match: XP_005715887.1 (unnamed protein product [Chondrus crispus] >CDF36068.1 unnamed protein product [Chondrus crispus])

HSP 1 Score: 65.1 bits (157), Expect = 3.400e-7
Identity = 27/47 (57.45%), Postives = 35/47 (74.47%), Query Frame = 0 
Query:  121 DVVAGFVGGAVGVMGTIMALEVKMRQVNERSKCPYCSGSGQLTCARC 168
            ++ A   GG VGVMGTI+ LEV+ +QV ER +CPYC G+G+L CA C
Sbjct:  122 EITAAIAGGTVGVMGTIITLEVRRQQVKERKQCPYCRGNGKLPCATC 168
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BLAST of NO30G00420 vs. NCBI_GenBank
Match: XP_005539462.1 (hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D] >BAM83426.1 hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 63.5 bits (153), Expect = 9.800e-7
Identity = 24/61 (39.34%), Postives = 41/61 (67.21%), Query Frame = 0 
Query:  121 DVVAGFVGGAVGVMGTIMALEVKMRQVNERSKCPYCSGSGQLTCARCCGLQSISIRRGAEG 182
            ++ + F GG++GV+GT++ LE+   +  ER +CPYCSG G+L C +C  L ++  R+  +G
Sbjct:   86 ELASAFAGGSIGVLGTLLTLELAQTRARERMQCPYCSGRGKLVCGQCLALGTLPNRKSPDG 146
[Close]
BLAST of NO30G00420 vs. NCBI_GenBank
Match: XP_005772846.1 (hypothetical protein EMIHUDRAFT_310517 [Emiliania huxleyi CCMP1516] >EOD20417.1 hypothetical protein EMIHUDRAFT_310517 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 63.5 bits (153), Expect = 9.800e-7
Identity = 26/53 (49.06%), Postives = 39/53 (73.58%), Query Frame = 0 
Query:  124 AGFVGGAVGVMGTIMALEVKMRQVNERSKCPYCSGSGQLTCARCCGLQSISIR 177
            A F+GG+VGV+GT+++  VK  QV +R KC YC+G+GQ+ C RC G + + +R
Sbjct:   67 AAFIGGSVGVIGTVISAFVKRDQVKDRLKCTYCNGTGQIVCGRCYGNKVLELR 119
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BLAST of NO30G00420 vs. NCBI_GenBank
Match: XP_005776061.1 (hypothetical protein EMIHUDRAFT_315551 [Emiliania huxleyi CCMP1516] >EOD23632.1 hypothetical protein EMIHUDRAFT_315551 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 63.5 bits (153), Expect = 9.800e-7
Identity = 26/53 (49.06%), Postives = 39/53 (73.58%), Query Frame = 0 
Query:  124 AGFVGGAVGVMGTIMALEVKMRQVNERSKCPYCSGSGQLTCARCCGLQSISIR 177
            A F+GG+VGV+GT+++  VK  QV +R KC YC+G+GQ+ C RC G + + +R
Sbjct:   67 AAFIGGSVGVIGTVISAFVKRDQVKDRLKCTYCNGTGQIVCGRCYGNKVLELR 119
The following BLAST results are available for this feature:
BLAST of NO30G00420 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 7
Match NameE-valueIdentityDescription
CBN75189.13.000e-1146.94conserved unknown protein [Ectocarpus siliculosus][more]
CBN73824.11.100e-829.27DnaJ Cysteine-Rich Domain-Containing Protein [Ecto... [more]
CEM11567.12.000e-752.21unnamed protein product [Vitrella brassicaformis C... [more]
XP_005715887.13.400e-757.45unnamed protein product [Chondrus crispus] >CDF360... [more]
XP_005539462.19.800e-739.34hypothetical protein, conserved [Cyanidioschyzon m... [more]
XP_005772846.19.800e-749.06hypothetical protein EMIHUDRAFT_310517 [Emiliania ... [more]
XP_005776061.19.800e-749.06hypothetical protein EMIHUDRAFT_315551 [Emiliania ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR051ncniR051Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR102ngnoR102Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO30G00420.1NO30G00420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605956gene_9278Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO30G00420.1NO30G00420.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO30G00420 ID=NO30G00420|Name=NO30G00420|organism=Nannochloropsis oceanica|type=gene|length=2274bp
AGGGAATGGGATTTTCTTTTCTCTTGGTTTTCTGTTCCACCAGCTTGGTA
CAGCACACCACCCGGAAGTCAAGCTTCAATGCACGCGCTGACATGGGGGG
GCGATGTCAACTGTCCGTCGTCTCACGTCATTCCGAATACAAGgtaatgc
tatgcatatggctggaaacgaggtggaagaatgcgccctagcagccacta
ctatgtcttgatctgaacagaacgggagagtgcgtggctccagcaagaat
gtagtaaggcctcgtttcccctatccaacaagttgcacctacgctcacgt
tctcattcccacatacatttactcatttcgaagGAACAGCAGCAGCGGGA
GATCCAGAAGCGGCACTGCTCGTGAAGCGAGGACATGAGGAGAGCACTGG
CTCGCGTGACGCCGCGCTTGCTCGTCCTCTTGGTGACTATCTGGCTCATG
GCGgtaagtgccacatgttatggaggagattgtttaagcctggtgaacgc
agtgtaagagaagttctagcaacaccataatcaccagcatgtgtctgttt
catttcccgcttcctactcctatgcgtgctgcttgtttcccatcccttca
atctccccctccctgcacacgacgctgcccctcccctcccactcccagGC
CTCCAACGCCCTCAGGCCGCTGTCCTCATCCTCTTCCACAAGACTAAGAT
CATCAGCCCTCTTTCAATTCTTGCACTCTTCCCCTTGCTCCTCCTGCTCA
TCTTCCACCCCTCACGACGACCACCACCACCACCACCACCATTCCTGCGG
CTGTGGATCTCGCCCCTCCTTCTCCTCCCCCCGGCAAATATCTCGCACCT
CATCATATCAACAAAGAAGAGCTCCTCCTTCCTTCCTAGCCCTTCAAGGC
GGTCCTCTGCTGGACTATGACATGATCCACGTGGCGGGCGATGTCGTGGC
GGGCTTTGTGGGCGGCGCCGTGGGGGTCATGGGCACCATCATGGCCCTTG
AGGTCAAGATGCGGCAAGgtaggtgaggggcagcgaggaagggagggaga
aaggggcggagggaggtaaggaaggcagacaaaagagaggacgggtagga
agaaagaaaagagccgaagaaatgattcttacggtccatcttctcgttca
tgagcctccaggcggcagaagggcagcaataaaagaccatctcacgtact
cccttcctcccttcctccctcccgccctccctcgcttggtccccagTAAA
TGAACGCAGCAAGTGTCCCTATTGCTCCGGTTCAGGCCAGCTGACGTGTG
CTCGGTGCTGCGGCCTGCAAAGCATAAGCATCCGTCGAGGTGCCGAGGGA
GGGGGCGAAGGAGGGCGGGTGGAGAAGGAGCCGTGTCCTTCCTGCCTGGG
CGTGGGGACGGTCCTGTGCATCAACTGCAAGGGCGACGGGCTGGCCATCC
CGGTGATGCTGGACAAGAAGGTGTCGAGGGACCCGGAGACGCGGCTGGAG
GAGTACGGCATGGGGTAAGGAGCTCCTCCTACCTCCCCACCTCCCCCCTC
CCTCACTCAGGGGTGTGTGGCCTTTGGTTGGAGTGGTGAGGTGAAGAGGA
CGTGGCAGGGACTAGGAGGGCGTAGCGACTGCGGCTTATGGCAGATCCAC
AGGAGGGGGATTAATGAGCACGCAAAAAGCTGGGCCTCGAGGTGCTGGGG
GAAGGAGGGGGAGGAGGAGGGTAACGAAGAAAAGGAAGAGGAGGAGAAAG
GAGGAATGGGCCGAGGCGAAGAGGGAGTGGGGGGAAAGAGGGAGGGAGGG
AGATCTTAATGAAAAGGTAGAAAAGTGGGATATGCTGCTGGTGGGTGTGG
CAGTGGGGGGGGAGGAGGGAGGAAGGAAGCGGGCAGTAGCGACGGCGGCA
GTAGCAACAGAAGGACAAGAAGGATGAGAAGATGGATAAGGTGATGATGA
TGATGATGACGAAGCCGAAATTGATAAGGAGGAGGGAAAACGAAGTCATG
CTGAAGAAGACGAAGACAAGAAGACGAAGAAGAAGAAGAAGAAGAAGAAA
TAGAAGCAGAAGAAGGACGAGAAAAGGAAAAAAGAACATGAATGACACGA
GCAAGAATGTTGTAGGTCCAAGGACAAGCCCGAGCCCCCGACAAACAAGC
GAAAGATGTGAGCGCCGTGTCCCGTCTGGCTCTTGTAAGTGGGAGTAGGG
GGTCGCGATGTATGGATGGGCGCGACAGAGAGAGTGCTGGGAGGGACGTG
GATGTAAGACACAGTGCGCTTCAA
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protein sequence of NO30G00420.1

>NO30G00420.1-protein ID=NO30G00420.1-protein|Name=NO30G00420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=237bp
MRRALARVTPRLLVLLVTIWLMAASNALRPLSSSSSTRLRSSALFQFLHS
SPCSSCSSSTPHDDHHHHHHHSCGCGSRPSFSSPRQISRTSSYQQRRAPP
SFLALQGGPLLDYDMIHVAGDVVAGFVGGAVGVMGTIMALEVKMRQVNER
SKCPYCSGSGQLTCARCCGLQSISIRRGAEGGGEGGRVEKEPCPSCLGVG
TVLCINCKGDGLAIPVMLDKKVSRDPETRLEEYGMG*
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Synonyms
Publications